Wall clock time and date at job start Tue Mar 31 2020 20:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47183 * 2 1 4 4 N 1.46495 * 109.47211 * 120.00405 * 2 1 3 5 5 C 1.34784 * 120.00026 * 274.99835 * 4 2 1 6 6 O 1.21281 * 119.99890 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99920 * 179.97438 * 5 4 2 8 8 N 1.46504 * 109.46941 * 180.02562 * 7 5 4 9 9 C 1.46499 * 120.00060 * 270.00028 * 8 7 5 10 10 C 1.34774 * 119.99835 * 90.00246 * 8 7 5 11 11 O 1.21279 * 120.00087 * 0.02562 * 10 8 7 12 12 C 1.50699 * 119.99810 * 180.02562 * 10 8 7 13 13 C 1.53001 * 117.50245 * 111.25445 * 12 10 8 14 14 C 1.52998 * 117.49957 * 179.91531 * 12 10 8 15 15 C 1.52997 * 109.47075 * 240.00427 * 2 1 3 16 16 H 1.08996 * 109.49902 * 299.93053 * 15 2 1 17 17 C 1.53035 * 109.49924 * 59.99978 * 15 2 1 18 18 C 1.53044 * 109.53870 * 181.31622 * 17 15 2 19 19 C 1.53194 * 109.31458 * 298.63353 * 18 17 15 20 20 N 1.46933 * 108.77242 * 54.63422 * 19 18 17 21 21 C 1.36938 * 120.62938 * 126.41421 * 20 19 18 22 22 H 1.08000 * 119.99916 * 207.67390 * 21 20 19 23 23 C 1.38807 * 120.00109 * 27.67425 * 21 20 19 24 24 N 1.31623 * 120.00056 * 17.35543 * 23 21 20 25 25 Si 1.86803 * 120.00383 * 197.35858 * 23 21 20 26 26 H 1.48495 * 109.47088 * 89.99530 * 25 23 21 27 27 H 1.48492 * 109.47335 * 210.00004 * 25 23 21 28 28 H 1.48507 * 109.46676 * 330.00030 * 25 23 21 29 29 C 1.46925 * 118.73913 * 306.39221 * 20 19 18 30 30 H 1.09002 * 109.47133 * 59.99400 * 1 2 3 31 31 H 1.08996 * 109.47119 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46782 * 299.99982 * 1 2 3 33 33 H 0.96998 * 120.00488 * 94.99479 * 4 2 1 34 34 H 1.09003 * 109.47475 * 60.00574 * 7 5 4 35 35 H 1.08997 * 109.47341 * 300.00344 * 7 5 4 36 36 H 1.08999 * 109.47606 * 270.00288 * 9 8 7 37 37 H 1.09004 * 109.47260 * 30.00350 * 9 8 7 38 38 H 1.09001 * 109.47094 * 150.00123 * 9 8 7 39 39 H 1.09003 * 115.55271 * 325.58158 * 12 10 8 40 40 H 1.09001 * 117.49725 * 215.00537 * 13 12 10 41 41 H 1.08999 * 117.49394 * 0.02562 * 13 12 10 42 42 H 1.09000 * 117.50173 * 359.97274 * 14 12 10 43 43 H 1.09001 * 117.50277 * 144.97129 * 14 12 10 44 44 H 1.09000 * 109.45939 * 301.33849 * 17 15 2 45 45 H 1.09002 * 109.46088 * 61.31286 * 17 15 2 46 46 H 1.08999 * 109.49944 * 58.58852 * 18 17 15 47 47 H 1.08997 * 109.49621 * 178.65232 * 18 17 15 48 48 H 1.08997 * 109.59009 * 174.42093 * 19 18 17 49 49 H 1.08997 * 109.58569 * 294.70749 * 19 18 17 50 50 H 0.97000 * 120.00424 * 179.97438 * 24 23 21 51 51 H 1.09005 * 109.58603 * 293.82371 * 29 20 19 52 52 H 1.09002 * 109.58479 * 173.39527 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8583 1.1583 2.4118 7 6 2.6489 -0.7290 3.5876 8 7 2.6978 0.2122 4.7093 9 6 3.9139 0.9892 4.9611 10 6 1.6239 0.3632 5.5095 11 8 0.6173 -0.2804 5.3014 12 6 1.6739 1.3317 6.6629 13 6 0.8032 2.5864 6.5703 14 6 0.4221 1.4592 7.5332 15 6 2.0400 -0.7211 -1.2493 16 1 1.6779 -1.7492 -1.2492 17 6 1.5302 -0.0001 -2.4992 18 6 2.0126 -0.7397 -3.7492 19 6 3.5442 -0.7367 -3.7803 20 7 4.0439 -1.2969 -2.5172 21 6 4.9328 -2.3385 -2.5192 22 1 4.9619 -3.0252 -1.6861 23 6 5.7965 -2.5118 -3.5919 24 7 6.0121 -1.5201 -4.4302 25 14 6.6529 -4.1524 -3.8462 26 1 5.8100 -5.0230 -4.7044 27 1 7.9649 -3.9291 -4.5048 28 1 6.8646 -4.8092 -2.5312 29 6 3.5720 -0.7180 -1.2519 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6318 1.1525 34 1 3.6481 -1.1215 3.3986 35 1 1.9761 -1.5508 3.8324 36 1 4.5665 0.4346 5.6354 37 1 4.4324 1.1680 4.0191 38 1 3.6478 1.9433 5.4161 39 1 2.6414 1.4259 7.1562 40 1 1.1979 3.5060 7.0024 41 1 0.1938 2.7110 5.6751 42 1 -0.4379 0.8429 7.2713 43 1 0.5659 1.6369 8.5990 44 1 0.4405 0.0206 -2.4874 45 1 1.9128 1.0205 -2.5111 46 1 1.6512 -1.7677 -3.7259 47 1 1.6293 -0.2394 -4.6385 48 1 3.8941 -1.3457 -4.6138 49 1 3.9053 0.2850 -3.8974 50 1 6.6159 -1.6410 -5.1796 51 1 3.9354 0.3056 -1.1604 52 1 3.9400 -1.3147 -0.4173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661989029.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:28 Heat of formation + Delta-G solvation = -49.157052 kcal Electronic energy + Delta-G solvation = -30265.215994 eV Core-core repulsion = 26265.152267 eV Total energy + Delta-G solvation = -4000.063728 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.55518 -40.63114 -39.36963 -37.27674 -36.76037 -36.31035 -34.68981 -32.74759 -32.21152 -30.30403 -29.54290 -27.57381 -27.11531 -25.33301 -24.34119 -23.61265 -23.34057 -22.17648 -21.51481 -20.69299 -19.95790 -18.71511 -18.56117 -18.27002 -17.59627 -16.88680 -16.67817 -16.36760 -15.98926 -15.81659 -15.59838 -15.37822 -15.03999 -14.97762 -14.70276 -14.56216 -14.15453 -14.05981 -13.85540 -13.73811 -13.56976 -13.39310 -13.21989 -13.02310 -12.87580 -12.78135 -12.61700 -12.45647 -12.29270 -12.21274 -11.94810 -11.77745 -11.54711 -11.52391 -11.45108 -11.31956 -11.15353 -11.02862 -10.93331 -10.52718 -10.06432 -9.74580 -8.67922 -7.85927 -5.31779 1.34697 1.47559 1.49448 1.57636 1.61846 1.79014 2.36905 2.51522 2.91783 3.28395 3.49201 3.53764 3.78402 3.83715 3.93204 3.96329 4.00046 4.05591 4.11176 4.21953 4.25983 4.32521 4.35182 4.43151 4.48834 4.64003 4.70835 4.71895 4.77178 4.83264 4.86239 4.86565 4.92132 4.92443 5.00392 5.03482 5.09537 5.20117 5.22499 5.24396 5.32339 5.33505 5.44350 5.53916 5.59895 5.67578 5.78226 6.25863 6.39311 6.55046 7.05986 7.15277 7.24659 7.86750 8.39216 9.20301 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016815 B = 0.002504 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.757228 B =11181.406125 C =12206.506738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.159 3.841 3 H 0.063 0.937 4 N -0.712 5.712 5 C 0.495 3.505 6 O -0.577 6.577 7 C 0.094 3.906 8 N -0.598 5.598 9 C 0.076 3.924 10 C 0.537 3.463 11 O -0.586 6.586 12 C -0.197 4.197 13 C -0.148 4.148 14 C -0.146 4.146 15 C -0.093 4.093 16 H 0.078 0.922 17 C -0.099 4.099 18 C -0.130 4.130 19 C 0.172 3.828 20 N -0.609 5.609 21 C -0.258 4.258 22 H 0.072 0.928 23 C -0.054 4.054 24 N -0.937 5.937 25 Si 0.967 3.033 26 H -0.287 1.287 27 H -0.299 1.299 28 H -0.265 1.265 29 C 0.158 3.842 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.412 0.588 34 H 0.143 0.857 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.157 0.843 40 H 0.134 0.866 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.133 0.867 44 H 0.084 0.916 45 H 0.049 0.951 46 H 0.055 0.945 47 H 0.068 0.932 48 H 0.052 0.948 49 H -0.010 1.010 50 H 0.248 0.752 51 H -0.004 1.004 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.227 4.498 21.206 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.053 3.947 3 H 0.081 0.919 4 N -0.365 5.365 5 C 0.281 3.719 6 O -0.456 6.456 7 C -0.032 4.032 8 N -0.328 5.328 9 C -0.065 4.065 10 C 0.327 3.673 11 O -0.467 6.467 12 C -0.218 4.218 13 C -0.185 4.185 14 C -0.184 4.184 15 C -0.113 4.113 16 H 0.097 0.903 17 C -0.136 4.136 18 C -0.169 4.169 19 C 0.047 3.953 20 N -0.332 5.332 21 C -0.388 4.388 22 H 0.090 0.910 23 C -0.249 4.249 24 N -0.584 5.584 25 Si 0.795 3.205 26 H -0.214 1.214 27 H -0.226 1.226 28 H -0.189 1.189 29 C 0.032 3.968 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.249 0.751 34 H 0.161 0.839 35 H 0.132 0.868 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.175 0.825 40 H 0.152 0.848 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.152 0.848 44 H 0.102 0.898 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.070 0.930 49 H 0.008 0.992 50 H 0.058 0.942 51 H 0.014 0.986 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.796 4.995 21.016 23.324 hybrid contribution 0.936 -0.986 -1.005 1.691 sum -7.860 4.009 20.011 21.870 Atomic orbital electron populations 1.22109 0.94358 1.02640 1.01911 1.20801 0.94338 0.96100 0.83442 0.91925 1.46028 1.66620 1.14683 1.09125 1.21642 0.77135 0.87447 0.85664 1.90656 1.51627 1.17826 1.85521 1.21457 1.05796 0.92451 0.83539 1.47470 1.15419 1.42350 1.27596 1.22065 0.85033 0.96510 1.02940 1.20382 0.81722 0.82058 0.83096 1.90650 1.32773 1.49125 1.74154 1.22305 1.00193 1.00184 0.99095 1.22991 1.01040 0.92911 1.01562 1.23033 0.96220 1.00842 0.98278 1.21734 0.96358 0.99854 0.93398 0.90318 1.21443 1.00719 0.98167 0.93315 1.22003 0.96786 1.00131 0.97966 1.20630 0.90811 0.94756 0.89152 1.44323 1.49779 1.38051 1.01006 1.19547 1.10994 1.02751 1.05548 0.91027 1.25815 0.98574 1.00483 1.00025 1.70208 1.39132 1.31241 1.17788 0.85271 0.77039 0.79993 0.78184 1.21353 1.22561 1.18926 1.20941 0.92482 0.94892 0.88477 0.90173 0.91396 0.94260 0.75143 0.83908 0.86784 0.89352 0.91283 0.89587 0.82523 0.84770 0.90892 0.89935 0.84846 0.89792 0.93247 0.92643 0.91354 0.92952 0.99234 0.94246 0.98557 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.13 71.98 0.66 -3.16 16 2 C 0.16 4.46 2.16 44.99 0.10 4.55 16 3 H 0.06 2.07 7.58 -2.38 -0.02 2.05 16 4 N -0.71 -17.97 4.48 -442.53 -1.98 -19.95 16 5 C 0.50 13.62 7.86 87.65 0.69 14.31 16 6 O -0.58 -20.46 16.09 -3.03 -0.05 -20.51 16 7 C 0.09 1.93 5.89 85.63 0.50 2.43 16 8 N -0.60 -12.41 2.36 -851.13 -2.01 -14.42 16 9 C 0.08 1.02 10.01 127.77 1.28 2.30 16 10 C 0.54 13.19 7.46 87.66 0.65 13.84 16 11 O -0.59 -19.24 15.84 -3.02 -0.05 -19.28 16 12 C -0.20 -3.20 4.79 -11.54 -0.06 -3.26 16 13 C -0.15 -2.28 10.24 30.62 0.31 -1.96 16 14 C -0.15 -2.20 10.05 30.62 0.31 -1.89 16 15 C -0.09 -2.89 1.97 -10.72 -0.02 -2.91 16 16 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 17 C -0.10 -3.05 4.85 30.62 0.15 -2.90 16 18 C -0.13 -4.72 6.08 30.67 0.19 -4.54 16 19 C 0.17 8.30 5.31 86.36 0.46 8.76 16 20 N -0.61 -29.85 3.00 -699.07 -2.09 -31.95 16 21 C -0.26 -13.78 9.59 84.03 0.81 -12.97 16 22 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 23 C -0.05 -2.97 4.91 84.86 0.42 -2.55 16 24 N -0.94 -55.43 11.19 21.65 0.24 -55.18 16 25 Si 0.97 44.04 29.59 68.60 2.03 46.07 16 26 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 27 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 28 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 29 C 0.16 6.27 5.56 86.36 0.48 6.75 16 30 H 0.08 1.81 6.40 -2.39 -0.02 1.79 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.41 8.53 8.43 -92.71 -0.78 7.75 16 34 H 0.14 1.94 8.07 -2.39 -0.02 1.92 16 35 H 0.11 2.33 7.42 -2.39 -0.02 2.32 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 1.04 8.07 -2.38 -0.02 1.02 16 38 H 0.09 0.98 6.64 -2.39 -0.02 0.97 16 39 H 0.16 1.45 7.27 -2.39 -0.02 1.44 16 40 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 1.67 7.67 -2.39 -0.02 1.65 16 43 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 2.11 6.36 -2.39 -0.02 2.09 16 45 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.05 2.86 6.04 -2.39 -0.01 2.85 16 49 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 50 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 51 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 52 H 0.06 2.19 7.45 -2.39 -0.02 2.17 16 Total: -1.00 -77.79 411.00 3.13 -74.65 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.12 Total: 23.77 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 6.92 Total: 16.80 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -5.84 Total: -121.50 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -0.10 Total: -39.79 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -77.79 3.13 -74.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661989029.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.494 kcal (2) G-P(sol) polarization free energy of solvation -77.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds