Wall clock time and date at job start Tue Mar 31 2020 20:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46559 * 2 1 4 4 C 1.53000 * 109.47269 * 240.00580 * 2 1 3 5 5 C 1.52992 * 109.47223 * 174.99869 * 4 2 1 6 6 N 1.46502 * 109.47498 * 179.97438 * 5 4 2 7 7 C 1.34768 * 120.00327 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00550 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99929 * 180.02562 * 7 6 5 10 10 H 1.08995 * 110.86083 * 59.30041 * 9 7 6 11 11 C 1.54625 * 110.96887 * 295.50734 * 9 7 6 12 12 C 1.51279 * 104.20125 * 266.68185 * 11 9 7 13 13 O 1.21275 * 124.94421 * 163.78470 * 12 11 9 14 14 N 1.34420 * 110.11270 * 343.74428 * 12 11 9 15 15 C 1.46497 * 124.35270 * 179.58617 * 14 12 11 16 16 C 1.54265 * 110.03212 * 57.88583 * 15 14 12 17 17 C 1.54969 * 104.16267 * 217.13936 * 16 15 14 18 18 C 1.54897 * 102.77477 * 37.88804 * 17 16 15 19 19 C 1.53880 * 110.03086 * 300.67339 * 15 14 12 20 20 C 1.46869 * 111.31013 * 359.59298 * 14 12 11 21 21 N 1.46490 * 109.47134 * 120.00251 * 2 1 3 22 22 C 1.36935 * 120.00121 * 274.99769 * 21 2 1 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 2 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 H 1.08996 * 109.47299 * 299.99229 * 1 2 3 31 31 H 1.08998 * 109.47621 * 59.99922 * 1 2 3 32 32 H 1.09007 * 109.46938 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46744 * 294.99646 * 4 2 1 34 34 H 1.09001 * 109.46902 * 54.99272 * 4 2 1 35 35 H 1.09003 * 109.47078 * 299.99572 * 5 4 2 36 36 H 1.09001 * 109.47669 * 59.99872 * 5 4 2 37 37 H 0.97004 * 119.99655 * 0.02562 * 6 5 4 38 38 H 1.09006 * 110.48724 * 25.36058 * 11 9 7 39 39 H 1.09005 * 110.48927 * 148.00046 * 11 9 7 40 40 H 1.09000 * 110.02299 * 179.27970 * 15 14 12 41 41 H 1.09001 * 110.48426 * 335.78547 * 16 15 14 42 42 H 1.08994 * 110.48627 * 98.42782 * 16 15 14 43 43 H 1.08993 * 110.72136 * 279.57495 * 17 16 15 44 44 H 1.09003 * 110.76509 * 156.22180 * 17 16 15 45 45 H 1.08997 * 110.47976 * 203.40726 * 18 17 16 46 46 H 1.08995 * 110.48468 * 80.76446 * 18 17 16 47 47 H 1.09008 * 110.03207 * 238.56740 * 19 15 14 48 48 H 1.09000 * 110.03237 * 359.97438 * 19 15 14 49 49 H 1.09002 * 110.25633 * 258.03799 * 20 14 12 50 50 H 1.08993 * 110.28402 * 136.00903 * 20 14 12 51 51 H 0.97000 * 120.00577 * 95.00368 * 21 2 1 52 52 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5648 -0.6131 -1.3137 6 7 4.0533 -1.3041 -2.5096 7 6 5.3741 -1.3395 -2.7753 8 8 6.1584 -0.7997 -2.0241 9 6 5.8764 -2.0498 -4.0058 10 1 5.4451 -1.6157 -4.9078 11 6 5.5845 -3.5662 -3.9273 12 6 6.8439 -4.1563 -3.3322 13 8 6.9304 -5.2653 -2.8491 14 7 7.8534 -3.2729 -3.4176 15 6 9.2117 -3.5198 -2.9276 16 6 9.8000 -4.7722 -3.6097 17 6 10.6260 -5.4594 -2.4929 18 6 9.7527 -5.2349 -1.2335 19 6 9.1819 -3.8136 -1.4174 20 6 7.4199 -2.0280 -4.0653 21 7 2.0183 -0.6906 1.1961 22 6 2.1492 -0.0076 2.3756 23 1 1.8920 1.0402 2.4243 24 6 2.6124 -0.6618 3.5090 25 7 2.9263 -1.9387 3.4495 26 14 2.7902 0.2699 5.1182 27 1 3.3004 -0.6483 6.1680 28 1 3.7447 1.3930 4.9370 29 1 1.4675 0.8056 5.5288 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7714 -1.2057 34 1 1.6053 -0.2616 -2.1370 35 1 3.8531 0.4372 -1.3574 36 1 3.9995 -1.0727 -0.4261 37 1 3.4259 -1.7356 -3.1107 38 1 4.7300 -3.7571 -3.2779 39 1 5.4063 -3.9725 -4.9230 40 1 9.8436 -2.6544 -3.1272 41 1 9.0017 -5.4300 -3.9531 42 1 10.4445 -4.4866 -4.4410 43 1 11.5974 -4.9782 -2.3801 44 1 10.7424 -6.5237 -2.6977 45 1 10.3630 -5.2873 -0.3319 46 1 8.9466 -5.9674 -1.1928 47 1 9.8000 -3.0912 -0.8842 48 1 8.1569 -3.7720 -1.0491 49 1 7.7571 -2.0045 -5.1015 50 1 7.8061 -1.1654 -3.5225 51 1 2.2491 -1.6318 1.1525 52 1 2.8336 -2.4225 2.6139 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663008076.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:05 Heat of formation + Delta-G solvation = -73.815822 kcal Electronic energy + Delta-G solvation = -30164.020675 eV Core-core repulsion = 26162.887663 eV Total energy + Delta-G solvation = -4001.133012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.21728 -39.41187 -37.50868 -36.85591 -36.10728 -34.58286 -32.70107 -32.15764 -29.24947 -28.82120 -28.13084 -27.90141 -27.47308 -24.25234 -23.36101 -22.21158 -21.63686 -20.80364 -20.56095 -19.74152 -18.88387 -17.74684 -17.39100 -17.08504 -16.17935 -15.89979 -15.57135 -15.34721 -14.94696 -14.70995 -14.47059 -14.39026 -13.97144 -13.79392 -13.60019 -13.46950 -13.33832 -13.25031 -12.65727 -12.59552 -12.22816 -12.08203 -11.90990 -11.73955 -11.66470 -11.56330 -11.20478 -11.17530 -11.11196 -11.05086 -10.93256 -10.68510 -10.60874 -10.56139 -10.23960 -9.93781 -9.81088 -9.75761 -9.12938 -8.99687 -8.87673 -8.80940 -7.01497 -6.05819 -3.06322 2.45321 2.54779 2.80247 3.10551 3.54339 3.58312 3.75630 3.98030 4.05254 4.41227 4.45500 4.48239 4.62492 4.70536 4.78323 4.95950 5.08961 5.13801 5.17887 5.26336 5.29056 5.30433 5.39102 5.40301 5.47368 5.48251 5.51321 5.58223 5.66697 5.68412 5.72749 5.75826 5.89344 5.96038 6.04541 6.06723 6.13991 6.23371 6.28428 6.31168 6.35828 6.52787 6.55439 6.56401 6.77968 6.97399 6.99177 7.47911 7.84109 8.06442 8.19612 8.79155 9.25473 10.11913 10.26173 11.42219 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.002813 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.987357 B = 9950.919355 C =11566.501410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.180 3.820 3 H 0.050 0.950 4 C -0.134 4.134 5 C 0.123 3.877 6 N -0.726 5.726 7 C 0.514 3.486 8 O -0.527 6.527 9 C -0.126 4.126 10 H 0.124 0.876 11 C -0.148 4.148 12 C 0.517 3.483 13 O -0.521 6.521 14 N -0.610 5.610 15 C 0.156 3.844 16 C -0.133 4.133 17 C -0.119 4.119 18 C -0.120 4.120 19 C -0.132 4.132 20 C 0.115 3.885 21 N -0.735 5.735 22 C -0.331 4.331 23 H 0.064 0.936 24 C -0.044 4.044 25 N -0.943 5.943 26 Si 1.078 2.922 27 H -0.285 1.285 28 H -0.295 1.295 29 H -0.296 1.296 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.397 0.603 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.078 0.922 50 H 0.097 0.903 51 H 0.366 0.634 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.548 -2.161 -22.767 24.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.069 3.931 3 H 0.068 0.932 4 C -0.172 4.172 5 C 0.000 4.000 6 N -0.377 5.377 7 C 0.299 3.701 8 O -0.402 6.402 9 C -0.148 4.148 10 H 0.142 0.858 11 C -0.189 4.189 12 C 0.305 3.695 13 O -0.397 6.397 14 N -0.343 5.343 15 C 0.054 3.946 16 C -0.172 4.172 17 C -0.157 4.157 18 C -0.158 4.158 19 C -0.170 4.170 20 C -0.008 4.008 21 N -0.378 5.378 22 C -0.462 4.462 23 H 0.082 0.918 24 C -0.242 4.242 25 N -0.588 5.588 26 Si 0.909 3.091 27 H -0.211 1.211 28 H -0.223 1.223 29 H -0.224 1.224 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.230 0.770 38 H 0.124 0.876 39 H 0.132 0.868 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.097 0.903 50 H 0.116 0.884 51 H 0.199 0.801 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.649 -2.241 -20.271 23.007 hybrid contribution -0.960 -0.117 -1.962 2.188 sum 9.689 -2.358 -22.233 24.367 Atomic orbital electron populations 1.22412 0.99041 1.00765 1.00092 1.20081 0.91890 0.95534 0.85550 0.93203 1.22082 0.93871 1.01744 0.99537 1.21446 0.94401 0.97200 0.86909 1.46069 1.07049 1.56952 1.27596 1.20163 0.82696 0.80567 0.86701 1.90753 1.55106 1.45399 1.48986 1.22328 0.97358 0.96125 0.98950 0.85827 1.22403 0.98647 0.93426 1.04405 1.20653 0.85573 0.84805 0.78504 1.90727 1.84207 1.19497 1.45247 1.48398 1.10275 1.16209 1.59465 1.21666 0.80803 0.98249 0.93873 1.22743 0.99693 0.96808 0.97936 1.22423 0.98017 1.00349 0.94935 1.22296 0.99169 0.96932 0.97379 1.22471 1.02505 0.97353 0.94713 1.22030 0.92076 0.88450 0.98259 1.42456 1.79245 1.09758 1.06341 1.19999 1.41989 0.95042 0.89130 0.91833 1.25735 0.99374 0.97492 1.01601 1.70887 1.51157 1.08339 1.28394 0.83268 0.75802 0.74338 0.75676 1.21069 1.22272 1.22352 0.92633 0.94451 0.93656 0.91723 0.91705 0.91635 0.90115 0.76951 0.87575 0.86794 0.89074 0.90341 0.91619 0.91589 0.91506 0.91825 0.90841 0.91231 0.90940 0.90349 0.88439 0.80067 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.49 37.16 0.35 -2.49 16 2 C 0.18 3.43 2.89 -67.93 -0.20 3.23 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 C -0.13 -1.96 4.87 -26.74 -0.13 -2.09 16 5 C 0.12 1.96 5.56 -4.04 -0.02 1.93 16 6 N -0.73 -8.73 5.37 -60.30 -0.32 -9.06 16 7 C 0.51 6.67 7.12 -10.99 -0.08 6.59 16 8 O -0.53 -9.36 15.51 5.56 0.09 -9.27 16 9 C -0.13 -1.03 3.54 -90.14 -0.32 -1.35 16 10 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 11 C -0.15 -1.30 6.40 -26.74 -0.17 -1.47 16 12 C 0.52 6.60 6.84 -10.86 -0.07 6.53 16 13 O -0.52 -8.50 15.91 5.56 0.09 -8.41 16 14 N -0.61 -6.75 2.83 -163.50 -0.46 -7.21 16 15 C 0.16 1.67 3.55 -66.81 -0.24 1.43 16 16 C -0.13 -1.29 6.30 -25.03 -0.16 -1.45 16 17 C -0.12 -1.12 6.91 -24.69 -0.17 -1.29 16 18 C -0.12 -1.39 6.83 -25.07 -0.17 -1.56 16 19 C -0.13 -1.67 6.01 -25.61 -0.15 -1.83 16 20 C 0.12 0.99 6.67 -3.07 -0.02 0.97 16 21 N -0.73 -18.01 4.57 -53.43 -0.24 -18.25 16 22 C -0.33 -9.28 9.93 -15.06 -0.15 -9.43 16 23 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 24 C -0.04 -1.30 5.50 -17.43 -0.10 -1.40 16 25 N -0.94 -29.67 13.70 55.49 0.76 -28.91 16 26 Si 1.08 26.48 29.92 -169.99 -5.09 21.40 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.79 8.14 -51.92 -0.42 0.36 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.65 7.75 -51.93 -0.40 1.25 16 37 H 0.40 3.37 8.47 -40.82 -0.35 3.03 16 38 H 0.11 0.99 7.75 -51.93 -0.40 0.59 16 39 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 41 H 0.08 0.92 6.48 -51.93 -0.34 0.58 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 1.00 8.07 -51.93 -0.42 0.59 16 47 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 48 H 0.07 1.17 7.34 -51.93 -0.38 0.79 16 49 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.10 1.00 6.98 -51.93 -0.36 0.63 16 51 H 0.37 9.37 6.63 -40.82 -0.27 9.10 16 52 H 0.25 7.90 6.77 -40.82 -0.28 7.62 16 LS Contribution 411.76 15.07 6.21 6.21 Total: -1.00 -36.55 411.76 -9.93 -46.48 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -9.16 Total: 10.70 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.80 Total: -3.67 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: -0.27 Total: -63.43 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: 0.17 Total: -17.68 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -5.09 Total: 21.40 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -36.55 -9.93 -46.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663008076.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.332 kcal (2) G-P(sol) polarization free energy of solvation -36.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds