Wall clock time and date at job start Tue Mar 31 2020 20:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46559 * 2 1 4 4 C 1.53000 * 109.47269 * 240.00580 * 2 1 3 5 5 C 1.52992 * 109.47223 * 174.99869 * 4 2 1 6 6 N 1.46502 * 109.47498 * 179.97438 * 5 4 2 7 7 C 1.34768 * 120.00327 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00550 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99929 * 180.02562 * 7 6 5 10 10 H 1.08995 * 110.86083 * 59.30041 * 9 7 6 11 11 C 1.54625 * 110.96887 * 295.50734 * 9 7 6 12 12 C 1.51279 * 104.20125 * 266.68185 * 11 9 7 13 13 O 1.21275 * 124.94421 * 163.78470 * 12 11 9 14 14 N 1.34420 * 110.11270 * 343.74428 * 12 11 9 15 15 C 1.46497 * 124.35270 * 179.58617 * 14 12 11 16 16 C 1.54265 * 110.03212 * 57.88583 * 15 14 12 17 17 C 1.54969 * 104.16267 * 217.13936 * 16 15 14 18 18 C 1.54897 * 102.77477 * 37.88804 * 17 16 15 19 19 C 1.53880 * 110.03086 * 300.67339 * 15 14 12 20 20 C 1.46869 * 111.31013 * 359.59298 * 14 12 11 21 21 N 1.46490 * 109.47134 * 120.00251 * 2 1 3 22 22 C 1.36935 * 120.00121 * 274.99769 * 21 2 1 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 2 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 2 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 H 1.08996 * 109.47299 * 299.99229 * 1 2 3 31 31 H 1.08998 * 109.47621 * 59.99922 * 1 2 3 32 32 H 1.09007 * 109.46938 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46744 * 294.99646 * 4 2 1 34 34 H 1.09001 * 109.46902 * 54.99272 * 4 2 1 35 35 H 1.09003 * 109.47078 * 299.99572 * 5 4 2 36 36 H 1.09001 * 109.47669 * 59.99872 * 5 4 2 37 37 H 0.97004 * 119.99655 * 0.02562 * 6 5 4 38 38 H 1.09006 * 110.48724 * 25.36058 * 11 9 7 39 39 H 1.09005 * 110.48927 * 148.00046 * 11 9 7 40 40 H 1.09000 * 110.02299 * 179.27970 * 15 14 12 41 41 H 1.09001 * 110.48426 * 335.78547 * 16 15 14 42 42 H 1.08994 * 110.48627 * 98.42782 * 16 15 14 43 43 H 1.08993 * 110.72136 * 279.57495 * 17 16 15 44 44 H 1.09003 * 110.76509 * 156.22180 * 17 16 15 45 45 H 1.08997 * 110.47976 * 203.40726 * 18 17 16 46 46 H 1.08995 * 110.48468 * 80.76446 * 18 17 16 47 47 H 1.09008 * 110.03207 * 238.56740 * 19 15 14 48 48 H 1.09000 * 110.03237 * 359.97438 * 19 15 14 49 49 H 1.09002 * 110.25633 * 258.03799 * 20 14 12 50 50 H 1.08993 * 110.28402 * 136.00903 * 20 14 12 51 51 H 0.97000 * 120.00577 * 95.00368 * 21 2 1 52 52 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5648 -0.6131 -1.3137 6 7 4.0533 -1.3041 -2.5096 7 6 5.3741 -1.3395 -2.7753 8 8 6.1584 -0.7997 -2.0241 9 6 5.8764 -2.0498 -4.0058 10 1 5.4451 -1.6157 -4.9078 11 6 5.5845 -3.5662 -3.9273 12 6 6.8439 -4.1563 -3.3322 13 8 6.9304 -5.2653 -2.8491 14 7 7.8534 -3.2729 -3.4176 15 6 9.2117 -3.5198 -2.9276 16 6 9.8000 -4.7722 -3.6097 17 6 10.6260 -5.4594 -2.4929 18 6 9.7527 -5.2349 -1.2335 19 6 9.1819 -3.8136 -1.4174 20 6 7.4199 -2.0280 -4.0653 21 7 2.0183 -0.6906 1.1961 22 6 2.1492 -0.0076 2.3756 23 1 1.8920 1.0402 2.4243 24 6 2.6124 -0.6618 3.5090 25 7 2.9263 -1.9387 3.4495 26 14 2.7902 0.2699 5.1182 27 1 3.3004 -0.6483 6.1680 28 1 3.7447 1.3930 4.9370 29 1 1.4675 0.8056 5.5288 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7517 -1.7714 -1.2057 34 1 1.6053 -0.2616 -2.1370 35 1 3.8531 0.4372 -1.3574 36 1 3.9995 -1.0727 -0.4261 37 1 3.4259 -1.7356 -3.1107 38 1 4.7300 -3.7571 -3.2779 39 1 5.4063 -3.9725 -4.9230 40 1 9.8436 -2.6544 -3.1272 41 1 9.0017 -5.4300 -3.9531 42 1 10.4445 -4.4866 -4.4410 43 1 11.5974 -4.9782 -2.3801 44 1 10.7424 -6.5237 -2.6977 45 1 10.3630 -5.2873 -0.3319 46 1 8.9466 -5.9674 -1.1928 47 1 9.8000 -3.0912 -0.8842 48 1 8.1569 -3.7720 -1.0491 49 1 7.7571 -2.0045 -5.1015 50 1 7.8061 -1.1654 -3.5225 51 1 2.2491 -1.6318 1.1525 52 1 2.8336 -2.4225 2.6139 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663008076.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:05 Heat of formation + Delta-G solvation = -100.033044 kcal Electronic energy + Delta-G solvation = -30165.157539 eV Core-core repulsion = 26162.887663 eV Total energy + Delta-G solvation = -4002.269876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.10447 -40.48174 -38.46977 -38.32165 -37.13074 -36.02414 -34.40075 -33.17582 -30.84989 -29.72097 -29.67747 -28.68841 -28.39486 -25.84686 -24.95967 -23.35467 -22.51828 -21.89070 -21.67116 -20.96875 -19.80552 -19.51498 -18.63441 -17.94286 -17.21446 -16.99942 -16.69740 -16.49423 -16.45549 -15.99583 -15.77849 -15.50967 -15.37367 -15.00950 -14.72510 -14.60724 -14.31695 -14.23348 -14.15794 -13.73371 -13.52575 -13.20627 -12.95330 -12.69376 -12.65956 -12.59336 -12.47940 -12.46782 -12.32477 -12.25418 -12.12448 -12.01620 -11.91579 -11.87800 -11.76368 -11.56823 -11.24963 -10.98889 -10.87972 -10.70561 -10.16738 -9.67236 -9.11329 -8.38696 -5.31449 1.51586 1.53943 1.54652 1.64574 1.80252 1.99978 2.12611 2.70151 3.23698 3.30106 3.40630 3.60260 3.61741 3.65231 3.72783 3.82904 3.90473 3.95399 4.10747 4.24240 4.32642 4.35367 4.41840 4.46890 4.48774 4.55545 4.59629 4.64965 4.67993 4.71643 4.76595 4.78373 4.83725 4.87393 4.92366 4.95004 4.99899 5.01876 5.11303 5.14730 5.19408 5.29969 5.38868 5.39250 5.50602 5.61669 5.69845 6.15529 6.48780 6.51378 7.10737 7.15144 7.22298 8.01631 8.12172 9.13155 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.002813 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.987357 B = 9950.919355 C =11566.501410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.168 3.832 3 H 0.041 0.959 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.711 5.711 7 C 0.505 3.495 8 O -0.584 6.584 9 C -0.108 4.108 10 H 0.181 0.819 11 C -0.139 4.139 12 C 0.497 3.503 13 O -0.572 6.572 14 N -0.612 5.612 15 C 0.150 3.850 16 C -0.125 4.125 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.135 4.135 20 C 0.110 3.890 21 N -0.748 5.748 22 C -0.322 4.322 23 H 0.066 0.934 24 C -0.110 4.110 25 N -0.979 5.979 26 Si 1.124 2.876 27 H -0.296 1.296 28 H -0.281 1.281 29 H -0.274 1.274 30 H 0.030 0.970 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.053 0.947 36 H 0.023 0.977 37 H 0.419 0.581 38 H 0.097 0.903 39 H 0.158 0.842 40 H 0.115 0.885 41 H 0.055 0.945 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.042 0.958 47 H 0.074 0.926 48 H 0.024 0.976 49 H 0.125 0.875 50 H 0.079 0.921 51 H 0.356 0.644 52 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.229 -0.761 -26.629 28.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.059 3.941 3 H 0.059 0.941 4 C -0.154 4.154 5 C 0.011 3.989 6 N -0.363 5.363 7 C 0.292 3.708 8 O -0.464 6.464 9 C -0.129 4.129 10 H 0.199 0.801 11 C -0.179 4.179 12 C 0.286 3.714 13 O -0.452 6.452 14 N -0.344 5.344 15 C 0.048 3.952 16 C -0.163 4.163 17 C -0.150 4.150 18 C -0.159 4.159 19 C -0.173 4.173 20 C -0.012 4.012 21 N -0.390 5.390 22 C -0.454 4.454 23 H 0.084 0.916 24 C -0.301 4.301 25 N -0.628 5.628 26 Si 0.949 3.051 27 H -0.222 1.222 28 H -0.207 1.207 29 H -0.200 1.200 30 H 0.049 0.951 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.130 0.870 35 H 0.071 0.929 36 H 0.042 0.958 37 H 0.257 0.743 38 H 0.116 0.884 39 H 0.175 0.825 40 H 0.133 0.867 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.061 0.939 47 H 0.093 0.907 48 H 0.043 0.957 49 H 0.143 0.857 50 H 0.097 0.903 51 H 0.188 0.812 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 10.273 -0.794 -24.228 26.328 hybrid contribution -0.870 -0.482 -0.788 1.269 sum 9.403 -1.275 -25.016 26.755 Atomic orbital electron populations 1.22248 0.97013 1.00972 1.00976 1.20420 0.93190 0.95075 0.85390 0.94129 1.21927 0.92572 1.01916 0.99007 1.21020 0.95214 0.96181 0.86517 1.45856 1.07609 1.56379 1.26496 1.21183 0.82229 0.79758 0.87631 1.90738 1.56467 1.47919 1.51230 1.22425 0.97168 0.95156 0.98119 0.80145 1.22457 0.95949 0.93350 1.06120 1.21488 0.87324 0.84507 0.78117 1.90695 1.85207 1.21759 1.47492 1.48582 1.10195 1.16801 1.58867 1.21813 0.81497 0.99783 0.92147 1.22681 0.99317 0.95675 0.98629 1.22428 0.98372 1.01016 0.93200 1.22267 0.98807 0.95458 0.99388 1.22479 0.99646 0.98284 0.96900 1.22311 0.92292 0.86432 1.00134 1.42684 1.79629 1.09460 1.07267 1.20349 1.39492 0.95192 0.90337 0.91637 1.27116 1.00045 0.97627 1.05275 1.71001 1.54236 1.09679 1.27855 0.82682 0.76957 0.73487 0.71996 1.22204 1.20711 1.20029 0.95121 0.90151 0.93761 0.91215 0.86971 0.92871 0.95842 0.74333 0.88424 0.82455 0.86723 0.92632 0.88686 0.89274 0.91035 0.91105 0.93933 0.90722 0.95680 0.85674 0.90267 0.81185 0.94846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 9.49 71.98 0.68 -4.33 16 2 C 0.17 6.28 2.89 44.99 0.13 6.41 16 3 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 4 C -0.12 -3.19 4.87 30.59 0.15 -3.04 16 5 C 0.14 4.34 5.56 86.38 0.48 4.82 16 6 N -0.71 -16.16 5.37 -463.07 -2.49 -18.64 16 7 C 0.50 12.66 7.12 87.66 0.62 13.28 16 8 O -0.58 -21.52 15.51 -3.03 -0.05 -21.56 16 9 C -0.11 -1.40 3.54 -10.48 -0.04 -1.44 16 10 H 0.18 0.41 8.14 -2.39 -0.02 0.39 16 11 C -0.14 -2.07 6.40 30.59 0.20 -1.88 16 12 C 0.50 12.70 6.84 87.90 0.60 13.30 16 13 O -0.57 -19.80 15.91 -3.01 -0.05 -19.85 16 14 N -0.61 -13.13 2.83 -789.78 -2.24 -15.37 16 15 C 0.15 3.15 3.55 45.72 0.16 3.31 16 16 C -0.12 -2.27 6.30 31.70 0.20 -2.08 16 17 C -0.11 -2.03 6.91 31.92 0.22 -1.81 16 18 C -0.12 -3.02 6.83 31.67 0.22 -2.80 16 19 C -0.13 -3.67 6.01 31.32 0.19 -3.48 16 20 C 0.11 1.61 6.67 86.81 0.58 2.19 16 21 N -0.75 -37.71 4.57 -322.96 -1.48 -39.19 16 22 C -0.32 -18.50 9.93 84.03 0.83 -17.66 16 23 H 0.07 3.67 7.83 -2.91 -0.02 3.64 16 24 C -0.11 -6.64 5.50 84.86 0.47 -6.17 16 25 N -0.98 -64.24 13.70 21.65 0.30 -63.94 16 26 Si 1.12 54.41 29.92 68.60 2.05 56.47 16 27 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 28 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 29 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 30 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 32 H 0.04 1.45 8.14 -2.38 -0.02 1.44 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.02 1.02 7.75 -2.39 -0.02 1.00 16 37 H 0.42 5.75 8.47 -92.71 -0.79 4.97 16 38 H 0.10 1.68 7.75 -2.38 -0.02 1.66 16 39 H 0.16 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.11 1.83 8.09 -2.39 -0.02 1.81 16 41 H 0.05 1.30 6.48 -2.39 -0.02 1.28 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.04 1.30 8.07 -2.39 -0.02 1.28 16 47 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 48 H 0.02 0.89 7.34 -2.39 -0.02 0.88 16 49 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.08 1.52 6.98 -2.39 -0.02 1.50 16 51 H 0.36 19.14 6.63 -92.71 -0.61 18.53 16 52 H 0.24 15.84 6.77 -92.71 -0.63 15.21 16 Total: -1.00 -89.70 411.76 1.40 -88.30 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: -0.35 Total: 35.16 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 5.69 Total: -1.38 kcal Atomic # 7 Polarization: -131.24 SS G_CDS: -5.90 Total: -137.14 kcal Atomic # 8 Polarization: -41.32 SS G_CDS: -0.09 Total: -41.41 kcal Atomic # 14 Polarization: 54.41 SS G_CDS: 2.05 Total: 56.47 kcal Total: -89.70 1.40 -88.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663008076.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.730 kcal (2) G-P(sol) polarization free energy of solvation -89.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds