Wall clock time and date at job start Tue Mar 31 2020 20:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47544 * 2 1 4 4 C 1.53004 * 109.46864 * 120.00188 * 2 1 3 5 5 C 1.53007 * 109.46847 * 184.99976 * 4 2 1 6 6 N 1.46503 * 109.46656 * 180.02562 * 5 4 2 7 7 C 1.34784 * 119.99755 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99405 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99852 * 179.97438 * 7 6 5 10 10 H 1.09002 * 110.85782 * 59.29754 * 9 7 6 11 11 C 1.54625 * 110.96838 * 295.50548 * 9 7 6 12 12 C 1.51282 * 104.19888 * 266.68170 * 11 9 7 13 13 O 1.21275 * 124.94678 * 163.78714 * 12 11 9 14 14 N 1.34424 * 110.11157 * 343.74819 * 12 11 9 15 15 C 1.46507 * 124.34774 * 179.58667 * 14 12 11 16 16 C 1.54263 * 110.03079 * 57.88435 * 15 14 12 17 17 C 1.54965 * 104.16033 * 217.13845 * 16 15 14 18 18 C 1.54889 * 102.77845 * 37.88495 * 17 16 15 19 19 C 1.53870 * 110.03290 * 300.66514 * 15 14 12 20 20 C 1.46855 * 111.31139 * 359.58669 * 14 12 11 21 21 N 1.46499 * 109.47258 * 239.99749 * 2 1 3 22 22 C 1.36935 * 119.99926 * 85.00376 * 21 2 1 23 23 H 1.08005 * 119.99877 * 359.97438 * 22 21 2 24 24 C 1.38811 * 120.00369 * 179.73019 * 22 21 2 25 25 N 1.31617 * 119.99773 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47050 * 59.99408 * 26 24 22 28 28 H 1.48496 * 109.47289 * 179.97438 * 26 24 22 29 29 H 1.48508 * 109.46855 * 299.99389 * 26 24 22 30 30 H 1.09007 * 109.47281 * 300.00191 * 1 2 3 31 31 H 1.09003 * 109.47025 * 59.99700 * 1 2 3 32 32 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47231 * 304.99700 * 4 2 1 34 34 H 1.08998 * 109.47079 * 65.00233 * 4 2 1 35 35 H 1.09007 * 109.46967 * 299.99587 * 5 4 2 36 36 H 1.08991 * 109.47351 * 60.00006 * 5 4 2 37 37 H 0.96993 * 120.00513 * 359.97438 * 6 5 4 38 38 H 1.08996 * 110.49007 * 25.36047 * 11 9 7 39 39 H 1.09001 * 110.48523 * 148.00295 * 11 9 7 40 40 H 1.08995 * 110.01491 * 179.27615 * 15 14 12 41 41 H 1.09003 * 110.49065 * 335.78356 * 16 15 14 42 42 H 1.09000 * 110.48808 * 98.42725 * 16 15 14 43 43 H 1.09007 * 110.71816 * 279.57184 * 17 16 15 44 44 H 1.08998 * 110.76746 * 156.22501 * 17 16 15 45 45 H 1.08997 * 110.48812 * 203.40984 * 18 17 16 46 46 H 1.08998 * 110.48438 * 80.76478 * 18 17 16 47 47 H 1.08994 * 110.03406 * 238.56844 * 19 15 14 48 48 H 1.09004 * 110.03148 * 0.02562 * 19 15 14 49 49 H 1.09001 * 110.26450 * 258.03946 * 20 14 12 50 50 H 1.09003 * 110.28274 * 136.00974 * 20 14 12 51 51 H 0.97005 * 120.00261 * 265.00500 * 21 2 1 52 52 H 0.97004 * 120.00382 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6134 1.3137 6 7 4.0531 -1.3046 2.5096 7 6 5.3740 -1.3400 2.7753 8 8 6.1582 -0.8001 2.0240 9 6 5.8762 -2.0505 4.0057 10 1 5.5894 -3.1020 3.9909 11 6 5.3692 -1.3566 5.2911 12 6 6.4776 -0.3933 5.6546 13 8 6.3661 0.5341 6.4281 14 7 7.6044 -0.7154 4.9961 15 6 8.8674 0.0181 5.1111 16 6 9.3312 0.0442 6.5821 17 6 9.9533 1.4525 6.7586 18 6 9.0147 2.3498 5.9143 19 6 8.6666 1.4833 4.6863 20 6 7.4069 -1.8969 4.1466 21 7 2.0183 -0.6906 -1.1961 22 6 2.1492 -0.0075 -2.3757 23 1 1.8919 1.0403 -2.4243 24 6 2.6172 -0.6605 -3.5077 25 7 2.9357 -1.9361 -3.4472 26 14 2.7964 0.2715 -5.1166 27 1 3.7469 1.3976 -4.9331 28 1 3.3120 -0.6451 -6.1649 29 1 1.4730 0.8032 -5.5307 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6053 -0.2618 2.1370 34 1 1.7515 -1.7716 1.2055 35 1 3.9994 -1.0729 0.4259 36 1 3.8532 0.4368 1.3574 37 1 3.4258 -1.7360 3.1105 38 1 4.4437 -0.8159 5.0931 39 1 5.2226 -2.0872 6.0866 40 1 9.6289 -0.4503 4.4877 41 1 8.4813 -0.0839 7.2525 42 1 10.0787 -0.7290 6.7602 43 1 10.9693 1.4774 6.3643 44 1 9.9369 1.7538 7.8059 45 1 9.5315 3.2585 5.6057 46 1 8.1135 2.5945 6.4764 47 1 9.3313 1.7262 3.8574 48 1 7.6293 1.6488 4.3951 49 1 7.8323 -2.7800 4.6234 50 1 7.8618 -1.7394 3.1687 51 1 2.2490 -1.6319 -1.1526 52 1 3.2631 -2.3924 -4.2381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663008098.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:12 Heat of formation + Delta-G solvation = -74.787899 kcal Electronic energy + Delta-G solvation = -29888.644087 eV Core-core repulsion = 25887.468922 eV Total energy + Delta-G solvation = -4001.175165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.23306 -39.38404 -37.56894 -36.75251 -36.09291 -34.44837 -32.58593 -32.07102 -29.36693 -28.90252 -28.26549 -27.91056 -27.49730 -24.27871 -23.49240 -22.15187 -21.67308 -20.88084 -20.45844 -19.60614 -18.92724 -17.74946 -17.15963 -17.12522 -16.19371 -15.87507 -15.55012 -15.34550 -15.01814 -14.74388 -14.50456 -14.06258 -13.94759 -13.84130 -13.54768 -13.44336 -13.36157 -13.23684 -12.56682 -12.50662 -12.11111 -12.05232 -11.91645 -11.78178 -11.69410 -11.55880 -11.28336 -11.26805 -11.11735 -11.08274 -10.91988 -10.74259 -10.70495 -10.64643 -10.31010 -10.04262 -9.82442 -9.71246 -9.63016 -8.94215 -8.86624 -8.83577 -6.95494 -5.75188 -3.03786 2.40139 2.60533 2.76863 3.16287 3.45798 3.50421 3.50965 3.98869 4.04137 4.39239 4.40044 4.45940 4.60897 4.62296 4.73599 5.00122 5.06175 5.11905 5.23345 5.25966 5.30455 5.32409 5.34108 5.37934 5.44642 5.46574 5.54258 5.55765 5.62498 5.66883 5.68975 5.81651 5.86300 5.95042 6.03939 6.05539 6.16416 6.21196 6.32489 6.37956 6.44672 6.49566 6.63580 6.68483 6.85710 6.95131 7.05393 7.54819 7.71660 8.01049 8.25931 8.43296 9.54657 10.10999 10.45689 11.47409 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015235 B = 0.002313 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.410884 B =12100.583982 C =12770.320967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.122 3.878 6 N -0.725 5.725 7 C 0.514 3.486 8 O -0.527 6.527 9 C -0.126 4.126 10 H 0.125 0.875 11 C -0.148 4.148 12 C 0.518 3.482 13 O -0.525 6.525 14 N -0.609 5.609 15 C 0.156 3.844 16 C -0.134 4.134 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.131 4.131 20 C 0.114 3.886 21 N -0.723 5.723 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.397 0.603 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.079 0.921 50 H 0.099 0.901 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.529 -1.575 23.331 25.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.171 4.171 5 C -0.001 4.001 6 N -0.376 5.376 7 C 0.299 3.701 8 O -0.403 6.403 9 C -0.148 4.148 10 H 0.143 0.857 11 C -0.188 4.188 12 C 0.305 3.695 13 O -0.402 6.402 14 N -0.342 5.342 15 C 0.053 3.947 16 C -0.172 4.172 17 C -0.158 4.158 18 C -0.157 4.157 19 C -0.169 4.169 20 C -0.009 4.009 21 N -0.365 5.365 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.582 5.582 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.230 0.770 38 H 0.124 0.876 39 H 0.132 0.868 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.117 0.883 51 H 0.217 0.783 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.130 -0.527 23.010 25.147 hybrid contribution -0.292 -0.244 -0.852 0.933 sum 9.838 -0.771 22.159 24.257 Atomic orbital electron populations 1.22425 0.99114 1.00826 0.99990 1.20152 0.91897 0.95580 0.86016 0.93323 1.22060 0.93830 1.01809 0.99386 1.21482 0.94489 0.97139 0.86952 1.46072 1.06995 1.56887 1.27623 1.20131 0.82787 0.80689 0.86507 1.90751 1.55169 1.45089 1.49306 1.22336 0.96746 1.02246 0.93476 0.85700 1.22394 0.99360 0.99562 0.97487 1.20677 0.84181 0.84730 0.79893 1.90711 1.83203 1.30544 1.35715 1.48409 1.11013 1.29915 1.44886 1.21665 0.83851 0.92228 0.96928 1.22745 1.00808 0.97560 0.96095 1.22422 0.98563 0.94620 1.00152 1.22296 0.99672 0.97584 0.96197 1.22463 1.02670 0.93627 0.98179 1.22058 0.94144 0.87930 0.96793 1.42437 1.78122 1.10615 1.05340 1.19175 1.36460 0.93866 0.87413 0.91289 1.24717 1.02098 0.95991 0.98058 1.69640 1.50710 1.08799 1.29027 0.86294 0.77737 0.78675 0.83650 1.21263 1.21746 1.21345 0.94569 0.92714 0.93519 0.91924 0.91558 0.89601 0.91868 0.76988 0.87638 0.86795 0.88987 0.90328 0.91549 0.91555 0.91507 0.91916 0.90912 0.91230 0.91074 0.90275 0.88289 0.78309 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.49 37.15 0.35 -2.46 16 2 C 0.17 3.28 2.89 -67.93 -0.20 3.08 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.94 4.87 -26.73 -0.13 -2.07 16 5 C 0.12 1.94 5.56 -4.04 -0.02 1.92 16 6 N -0.72 -8.78 5.37 -60.29 -0.32 -9.10 16 7 C 0.51 6.69 7.12 -10.98 -0.08 6.62 16 8 O -0.53 -9.38 15.51 5.56 0.09 -9.30 16 9 C -0.13 -1.04 3.54 -90.14 -0.32 -1.36 16 10 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 11 C -0.15 -1.18 6.40 -26.74 -0.17 -1.35 16 12 C 0.52 6.02 6.84 -10.86 -0.07 5.95 16 13 O -0.53 -7.77 15.91 5.56 0.09 -7.68 16 14 N -0.61 -6.29 2.83 -163.50 -0.46 -6.76 16 15 C 0.16 1.53 3.55 -66.81 -0.24 1.29 16 16 C -0.13 -1.19 6.29 -25.03 -0.16 -1.35 16 17 C -0.12 -1.00 6.91 -24.70 -0.17 -1.17 16 18 C -0.12 -1.20 6.83 -25.07 -0.17 -1.37 16 19 C -0.13 -1.45 6.01 -25.61 -0.15 -1.61 16 20 C 0.11 0.98 6.67 -3.07 -0.02 0.96 16 21 N -0.72 -17.46 4.57 -53.43 -0.24 -17.70 16 22 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 23 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 26 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.72 7.75 -51.93 -0.40 1.32 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.40 3.40 8.47 -40.82 -0.35 3.05 16 38 H 0.11 0.85 7.75 -51.93 -0.40 0.45 16 39 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.76 8.08 -51.93 -0.42 0.34 16 41 H 0.08 0.85 6.48 -51.93 -0.34 0.52 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 1.00 7.34 -51.93 -0.38 0.62 16 49 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.10 1.03 6.98 -51.93 -0.36 0.67 16 51 H 0.38 9.83 7.80 -40.82 -0.32 9.52 16 52 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 413.46 15.07 6.23 6.23 Total: -1.00 -34.65 413.46 -9.99 -44.64 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -9.27 Total: 9.49 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.80 Total: -0.04 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -0.31 Total: -60.87 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.17 Total: -16.98 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.65 -9.99 -44.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663008098.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.144 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds