Wall clock time and date at job start Tue Mar 31 2020 20:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47544 * 2 1 4 4 C 1.53004 * 109.46864 * 120.00188 * 2 1 3 5 5 C 1.53007 * 109.46847 * 184.99976 * 4 2 1 6 6 N 1.46503 * 109.46656 * 180.02562 * 5 4 2 7 7 C 1.34784 * 119.99755 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99405 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99852 * 179.97438 * 7 6 5 10 10 H 1.09002 * 110.85782 * 59.29754 * 9 7 6 11 11 C 1.54625 * 110.96838 * 295.50548 * 9 7 6 12 12 C 1.51282 * 104.19888 * 266.68170 * 11 9 7 13 13 O 1.21275 * 124.94678 * 163.78714 * 12 11 9 14 14 N 1.34424 * 110.11157 * 343.74819 * 12 11 9 15 15 C 1.46507 * 124.34774 * 179.58667 * 14 12 11 16 16 C 1.54263 * 110.03079 * 57.88435 * 15 14 12 17 17 C 1.54965 * 104.16033 * 217.13845 * 16 15 14 18 18 C 1.54889 * 102.77845 * 37.88495 * 17 16 15 19 19 C 1.53870 * 110.03290 * 300.66514 * 15 14 12 20 20 C 1.46855 * 111.31139 * 359.58669 * 14 12 11 21 21 N 1.46499 * 109.47258 * 239.99749 * 2 1 3 22 22 C 1.36935 * 119.99926 * 85.00376 * 21 2 1 23 23 H 1.08005 * 119.99877 * 359.97438 * 22 21 2 24 24 C 1.38811 * 120.00369 * 179.73019 * 22 21 2 25 25 N 1.31617 * 119.99773 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47050 * 59.99408 * 26 24 22 28 28 H 1.48496 * 109.47289 * 179.97438 * 26 24 22 29 29 H 1.48508 * 109.46855 * 299.99389 * 26 24 22 30 30 H 1.09007 * 109.47281 * 300.00191 * 1 2 3 31 31 H 1.09003 * 109.47025 * 59.99700 * 1 2 3 32 32 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47231 * 304.99700 * 4 2 1 34 34 H 1.08998 * 109.47079 * 65.00233 * 4 2 1 35 35 H 1.09007 * 109.46967 * 299.99587 * 5 4 2 36 36 H 1.08991 * 109.47351 * 60.00006 * 5 4 2 37 37 H 0.96993 * 120.00513 * 359.97438 * 6 5 4 38 38 H 1.08996 * 110.49007 * 25.36047 * 11 9 7 39 39 H 1.09001 * 110.48523 * 148.00295 * 11 9 7 40 40 H 1.08995 * 110.01491 * 179.27615 * 15 14 12 41 41 H 1.09003 * 110.49065 * 335.78356 * 16 15 14 42 42 H 1.09000 * 110.48808 * 98.42725 * 16 15 14 43 43 H 1.09007 * 110.71816 * 279.57184 * 17 16 15 44 44 H 1.08998 * 110.76746 * 156.22501 * 17 16 15 45 45 H 1.08997 * 110.48812 * 203.40984 * 18 17 16 46 46 H 1.08998 * 110.48438 * 80.76478 * 18 17 16 47 47 H 1.08994 * 110.03406 * 238.56844 * 19 15 14 48 48 H 1.09004 * 110.03148 * 0.02562 * 19 15 14 49 49 H 1.09001 * 110.26450 * 258.03946 * 20 14 12 50 50 H 1.09003 * 110.28274 * 136.00974 * 20 14 12 51 51 H 0.97005 * 120.00261 * 265.00500 * 21 2 1 52 52 H 0.97004 * 120.00382 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6134 1.3137 6 7 4.0531 -1.3046 2.5096 7 6 5.3740 -1.3400 2.7753 8 8 6.1582 -0.8001 2.0240 9 6 5.8762 -2.0505 4.0057 10 1 5.5894 -3.1020 3.9909 11 6 5.3692 -1.3566 5.2911 12 6 6.4776 -0.3933 5.6546 13 8 6.3661 0.5341 6.4281 14 7 7.6044 -0.7154 4.9961 15 6 8.8674 0.0181 5.1111 16 6 9.3312 0.0442 6.5821 17 6 9.9533 1.4525 6.7586 18 6 9.0147 2.3498 5.9143 19 6 8.6666 1.4833 4.6863 20 6 7.4069 -1.8969 4.1466 21 7 2.0183 -0.6906 -1.1961 22 6 2.1492 -0.0075 -2.3757 23 1 1.8919 1.0403 -2.4243 24 6 2.6172 -0.6605 -3.5077 25 7 2.9357 -1.9361 -3.4472 26 14 2.7964 0.2715 -5.1166 27 1 3.7469 1.3976 -4.9331 28 1 3.3120 -0.6451 -6.1649 29 1 1.4730 0.8032 -5.5307 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6053 -0.2618 2.1370 34 1 1.7515 -1.7716 1.2055 35 1 3.9994 -1.0729 0.4259 36 1 3.8532 0.4368 1.3574 37 1 3.4258 -1.7360 3.1105 38 1 4.4437 -0.8159 5.0931 39 1 5.2226 -2.0872 6.0866 40 1 9.6289 -0.4503 4.4877 41 1 8.4813 -0.0839 7.2525 42 1 10.0787 -0.7290 6.7602 43 1 10.9693 1.4774 6.3643 44 1 9.9369 1.7538 7.8059 45 1 9.5315 3.2585 5.6057 46 1 8.1135 2.5945 6.4764 47 1 9.3313 1.7262 3.8574 48 1 7.6293 1.6488 4.3951 49 1 7.8323 -2.7800 4.6234 50 1 7.8618 -1.7394 3.1687 51 1 2.2490 -1.6319 -1.1526 52 1 3.2631 -2.3924 -4.2381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663008098.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:11 Heat of formation + Delta-G solvation = -98.753803 kcal Electronic energy + Delta-G solvation = -29889.683327 eV Core-core repulsion = 25887.468922 eV Total energy + Delta-G solvation = -4002.214404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.06888 -40.42516 -38.40399 -38.17274 -37.07315 -35.84967 -34.19182 -33.13998 -31.02119 -29.69296 -29.68255 -28.64760 -28.35404 -25.92589 -24.90266 -23.27451 -22.47928 -21.73986 -21.62520 -20.87885 -19.76576 -19.29526 -18.54161 -17.91028 -17.11955 -17.03418 -16.71988 -16.46147 -16.29091 -15.80391 -15.59935 -15.39297 -15.30829 -14.95255 -14.67356 -14.58205 -14.27958 -14.14112 -14.11169 -13.56732 -13.48635 -13.23823 -12.90556 -12.80271 -12.66232 -12.58699 -12.56502 -12.43652 -12.31301 -12.22446 -12.11813 -12.08805 -11.99066 -11.85085 -11.64194 -11.59779 -11.52938 -10.96319 -10.83797 -10.66841 -10.09037 -9.64719 -8.97626 -7.92948 -5.19305 1.45290 1.47967 1.53415 1.55744 1.60341 2.02416 2.17897 2.56631 3.27366 3.33170 3.40949 3.63211 3.65461 3.69408 3.86161 3.91899 3.98362 4.01376 4.22391 4.35845 4.37330 4.39786 4.44785 4.49910 4.52792 4.62288 4.65987 4.68717 4.74866 4.77742 4.81071 4.85751 4.87894 4.91197 4.97743 5.02656 5.04653 5.11083 5.17148 5.21851 5.23209 5.39753 5.42127 5.46726 5.53506 5.61322 5.71412 6.18149 6.30322 6.57609 7.17999 7.28269 7.36474 8.14265 8.36117 9.30281 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015235 B = 0.002313 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.410884 B =12100.583982 C =12770.320967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.037 0.963 4 C -0.115 4.115 5 C 0.134 3.866 6 N -0.711 5.711 7 C 0.506 3.494 8 O -0.584 6.584 9 C -0.111 4.111 10 H 0.173 0.827 11 C -0.136 4.136 12 C 0.501 3.499 13 O -0.568 6.568 14 N -0.611 5.611 15 C 0.148 3.852 16 C -0.126 4.126 17 C -0.114 4.114 18 C -0.119 4.119 19 C -0.132 4.132 20 C 0.110 3.890 21 N -0.733 5.733 22 C -0.235 4.235 23 H 0.071 0.929 24 C -0.076 4.076 25 N -0.968 5.968 26 Si 0.965 3.035 27 H -0.284 1.284 28 H -0.296 1.296 29 H -0.277 1.277 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.047 0.953 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.038 0.962 36 H 0.041 0.959 37 H 0.419 0.581 38 H 0.106 0.894 39 H 0.154 0.846 40 H 0.109 0.891 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.046 0.954 47 H 0.073 0.927 48 H 0.032 0.968 49 H 0.120 0.880 50 H 0.076 0.924 51 H 0.373 0.627 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.283 -2.837 25.508 27.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.055 0.945 4 C -0.153 4.153 5 C 0.010 3.990 6 N -0.363 5.363 7 C 0.293 3.707 8 O -0.464 6.464 9 C -0.132 4.132 10 H 0.190 0.810 11 C -0.176 4.176 12 C 0.290 3.710 13 O -0.448 6.448 14 N -0.344 5.344 15 C 0.045 3.955 16 C -0.164 4.164 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.171 4.171 20 C -0.012 4.012 21 N -0.374 5.374 22 C -0.367 4.367 23 H 0.089 0.911 24 C -0.268 4.268 25 N -0.619 5.619 26 Si 0.795 3.205 27 H -0.210 1.210 28 H -0.222 1.222 29 H -0.203 1.203 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.256 0.744 38 H 0.124 0.876 39 H 0.172 0.828 40 H 0.127 0.873 41 H 0.075 0.925 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.065 0.935 47 H 0.092 0.908 48 H 0.051 0.949 49 H 0.138 0.862 50 H 0.095 0.905 51 H 0.205 0.795 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.837 -1.792 25.235 27.144 hybrid contribution -0.219 0.238 -1.488 1.522 sum 9.618 -1.554 23.748 25.668 Atomic orbital electron populations 1.22261 0.97115 1.01155 1.00761 1.20454 0.93180 0.95047 0.85886 0.94464 1.21904 0.92468 1.02275 0.98683 1.21049 0.95379 0.95713 0.86868 1.45861 1.07522 1.56307 1.26599 1.21123 0.82342 0.79859 0.87419 1.90735 1.56549 1.47468 1.51637 1.22400 0.96269 1.03908 0.90620 0.81000 1.22446 0.97652 0.99390 0.98133 1.21405 0.85382 0.84800 0.79420 1.90684 1.83987 1.32420 1.37722 1.48573 1.10974 1.30302 1.44514 1.21819 0.84391 0.91272 0.97995 1.22681 1.00538 0.98531 0.94664 1.22432 0.98911 0.93731 1.00134 1.22257 0.99229 0.98359 0.95809 1.22460 1.00261 0.95488 0.98876 1.22259 0.94515 0.88553 0.95894 1.42612 1.78404 1.10236 1.06188 1.19536 1.34469 0.94044 0.88621 0.91126 1.25457 1.03229 0.96918 1.01238 1.69786 1.52603 1.10174 1.29351 0.85333 0.77877 0.77345 0.79981 1.21016 1.22221 1.20346 0.90725 0.95003 0.93370 0.87894 0.90468 0.94378 0.94042 0.74374 0.87598 0.82788 0.87299 0.92451 0.89219 0.89584 0.91011 0.90923 0.93469 0.90783 0.94928 0.86192 0.90527 0.79504 0.94216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 9.49 71.98 0.68 -4.29 16 2 C 0.16 6.02 2.89 44.99 0.13 6.15 16 3 H 0.04 1.46 8.08 -2.39 -0.02 1.44 16 4 C -0.12 -3.16 4.87 30.60 0.15 -3.01 16 5 C 0.13 4.31 5.56 86.38 0.48 4.79 16 6 N -0.71 -16.25 5.37 -463.04 -2.49 -18.74 16 7 C 0.51 12.79 7.12 87.65 0.62 13.42 16 8 O -0.58 -21.62 15.51 -3.04 -0.05 -21.66 16 9 C -0.11 -1.49 3.54 -10.48 -0.04 -1.53 16 10 H 0.17 0.80 8.14 -2.39 -0.02 0.78 16 11 C -0.14 -1.76 6.40 30.59 0.20 -1.57 16 12 C 0.50 11.30 6.84 87.90 0.60 11.90 16 13 O -0.57 -17.22 15.91 -3.01 -0.05 -17.27 16 14 N -0.61 -12.12 2.83 -789.79 -2.24 -14.35 16 15 C 0.15 2.82 3.55 45.71 0.16 2.98 16 16 C -0.13 -2.08 6.29 31.69 0.20 -1.88 16 17 C -0.11 -1.78 6.91 31.91 0.22 -1.56 16 18 C -0.12 -2.46 6.83 31.67 0.22 -2.24 16 19 C -0.13 -3.09 6.01 31.32 0.19 -2.90 16 20 C 0.11 1.66 6.67 86.81 0.58 2.24 16 21 N -0.73 -35.99 4.57 -322.94 -1.48 -37.47 16 22 C -0.23 -13.08 9.93 84.03 0.83 -12.24 16 23 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 24 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 25 N -0.97 -59.68 13.06 21.65 0.28 -59.40 16 26 Si 0.96 47.20 29.55 68.60 2.03 49.23 16 27 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 28 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 29 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 30 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.04 1.60 7.75 -2.38 -0.02 1.58 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.42 5.81 8.47 -92.71 -0.79 5.03 16 38 H 0.11 1.42 7.75 -2.39 -0.02 1.40 16 39 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.11 1.67 8.08 -2.39 -0.02 1.65 16 41 H 0.06 1.22 6.48 -2.39 -0.02 1.20 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 1.02 8.14 -2.38 -0.02 1.01 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.05 1.21 8.07 -2.39 -0.02 1.19 16 47 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.03 0.99 7.34 -2.38 -0.02 0.97 16 49 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.08 1.56 6.98 -2.39 -0.02 1.54 16 51 H 0.37 19.62 7.80 -92.70 -0.72 18.89 16 52 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -82.18 413.46 1.11 -81.07 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: -0.60 Total: 32.30 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 5.69 Total: 6.29 kcal Atomic # 7 Polarization: -124.04 SS G_CDS: -5.92 Total: -129.95 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -0.10 Total: -38.93 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -82.18 1.11 -81.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663008098.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.686 kcal (2) G-P(sol) polarization free energy of solvation -82.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds