Wall clock time and date at job start Tue Mar 31 2020 20:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.53005 * 109.46991 * 184.99870 * 4 2 1 6 6 N 1.46496 * 109.46653 * 179.97438 * 5 4 2 7 7 C 1.34786 * 119.99884 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99706 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00179 * 180.02562 * 7 6 5 10 10 H 1.08997 * 110.85651 * 297.66952 * 9 7 6 11 11 C 1.54629 * 110.96950 * 61.45709 * 9 7 6 12 12 C 1.51278 * 104.19787 * 142.91537 * 11 9 7 13 13 O 1.21286 * 124.94235 * 163.78419 * 12 11 9 14 14 N 1.34419 * 110.11464 * 343.74845 * 12 11 9 15 15 C 1.46496 * 124.34971 * 179.57324 * 14 12 11 16 16 C 1.54271 * 110.03265 * 57.88006 * 15 14 12 17 17 C 1.54971 * 104.15691 * 217.13719 * 16 15 14 18 18 C 1.54886 * 102.77670 * 37.89084 * 17 16 15 19 19 C 1.53872 * 110.03174 * 300.66331 * 15 14 12 20 20 C 1.46761 * 111.30144 * 359.58968 * 14 12 11 21 21 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 22 22 C 1.36945 * 119.99649 * 85.00202 * 21 2 1 23 23 H 1.07997 * 120.00244 * 359.97438 * 22 21 2 24 24 C 1.38812 * 119.99544 * 180.02562 * 22 21 2 25 25 N 1.31625 * 119.99618 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00424 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47074 * 90.00007 * 26 24 22 28 28 H 1.48499 * 109.46948 * 210.00030 * 26 24 22 29 29 H 1.48495 * 109.46973 * 329.99849 * 26 24 22 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 34 34 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 35 35 H 1.08996 * 109.46933 * 299.99587 * 5 4 2 36 36 H 1.09006 * 109.47013 * 60.00029 * 5 4 2 37 37 H 0.97002 * 120.00465 * 0.02562 * 6 5 4 38 38 H 1.09000 * 110.48926 * 261.59536 * 11 9 7 39 39 H 1.09008 * 110.48363 * 24.23574 * 11 9 7 40 40 H 1.09000 * 110.01852 * 179.26984 * 15 14 12 41 41 H 1.08990 * 110.48670 * 335.78472 * 16 15 14 42 42 H 1.08997 * 110.48512 * 98.42993 * 16 15 14 43 43 H 1.09003 * 110.72002 * 279.57273 * 17 16 15 44 44 H 1.09005 * 110.91965 * 156.30099 * 17 16 15 45 45 H 1.09004 * 110.48079 * 203.40152 * 18 17 16 46 46 H 1.08997 * 110.48888 * 80.75969 * 18 17 16 47 47 H 1.09002 * 110.03623 * 238.56967 * 19 15 14 48 48 H 1.08999 * 110.03419 * 0.02562 * 19 15 14 49 49 H 1.09000 * 110.24784 * 258.01934 * 20 14 12 50 50 H 1.09003 * 110.24427 * 136.01422 * 20 14 12 51 51 H 0.96996 * 120.00792 * 265.00493 * 21 2 1 52 52 H 0.97001 * 120.00319 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3137 6 7 4.0531 -1.3035 2.5101 7 6 5.3741 -1.3397 2.7754 8 8 6.1584 -0.8005 2.0238 9 6 5.8764 -2.0500 4.0058 10 1 5.4877 -1.5818 4.9101 11 6 5.5166 -3.5533 3.9626 12 6 6.7164 -4.2398 4.5770 13 8 6.7300 -5.3820 4.9845 14 7 7.7656 -3.3999 4.6048 15 6 9.0841 -3.7418 5.1440 16 6 9.6543 -4.9708 4.4061 17 6 10.3896 -5.7694 5.5121 18 6 9.4606 -5.5911 6.7385 19 6 8.9613 -4.1358 6.6264 20 6 7.4204 -2.0962 4.0259 21 7 2.0183 -0.6907 -1.1961 22 6 2.1491 -0.0075 -2.3757 23 1 1.8919 1.0403 -2.4244 24 6 2.6113 -0.6621 -3.5092 25 7 2.7375 -0.0054 -4.6429 26 14 3.0556 -2.4746 -3.4253 27 1 1.8582 -3.2930 -3.7441 28 1 4.1306 -2.7667 -4.4073 29 1 3.5312 -2.8048 -2.0579 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6055 -0.2618 2.1370 34 1 1.7516 -1.7716 1.2057 35 1 3.9994 -1.0729 0.4260 36 1 3.8532 0.4370 1.3573 37 1 3.4257 -1.7350 3.1111 38 1 4.6215 -3.7485 4.5532 39 1 5.3747 -3.8821 2.9330 40 1 9.7618 -2.8948 5.0377 41 1 8.8484 -5.5663 3.9776 42 1 10.3538 -4.6593 3.6304 43 1 11.3732 -5.3421 5.7071 44 1 10.4741 -6.8219 5.2412 45 1 10.0191 -5.7327 7.6638 46 1 8.6231 -6.2868 6.6871 47 1 9.5801 -3.4805 7.2395 48 1 7.9206 -4.0730 6.9445 49 1 7.8133 -2.0176 3.0123 50 1 7.8137 -1.2916 4.6473 51 1 2.2490 -1.6318 -1.1526 52 1 3.0609 -0.4626 -5.4349 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663008100.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:15 Heat of formation + Delta-G solvation = -71.612405 kcal Electronic energy + Delta-G solvation = -29553.418535 eV Core-core repulsion = 25552.381070 eV Total energy + Delta-G solvation = -4001.037465 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.28427 -39.61860 -37.70700 -36.94021 -36.27012 -34.61110 -32.67023 -32.12933 -29.87259 -29.04770 -28.61976 -27.99585 -27.63871 -24.28865 -23.27814 -22.22840 -21.79728 -21.00181 -20.56145 -19.79593 -19.06126 -17.87778 -17.48203 -17.19432 -16.48109 -15.97230 -15.65722 -15.44438 -15.10358 -15.01595 -14.62310 -14.14850 -14.02942 -13.95066 -13.69594 -13.61922 -13.52779 -13.25429 -12.86648 -12.55941 -12.23809 -12.04820 -12.00777 -11.97131 -11.92452 -11.65378 -11.44188 -11.38260 -11.27767 -11.21459 -11.08216 -10.86335 -10.81546 -10.69322 -10.47282 -10.16769 -10.00850 -9.75055 -9.58600 -9.07774 -8.96704 -8.93524 -7.28275 -5.76571 -3.12407 2.28786 2.46229 2.56131 3.07011 3.37725 3.39728 3.46332 3.87680 3.96001 4.25566 4.27155 4.41441 4.48961 4.59305 4.61416 4.83021 4.94990 5.06729 5.09093 5.10404 5.14338 5.16919 5.17701 5.23063 5.35524 5.37111 5.44050 5.49259 5.55221 5.56905 5.59005 5.59326 5.66222 5.81636 5.86972 5.91019 6.02435 6.07419 6.18361 6.21523 6.30579 6.35223 6.43887 6.48215 6.74875 6.80511 6.94571 7.39402 7.88410 7.99100 8.10050 8.42263 9.20377 9.92894 10.11721 11.41809 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.002266 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.601969 B =12351.602320 C =13154.286671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.179 3.821 3 H 0.058 0.942 4 C -0.136 4.136 5 C 0.119 3.881 6 N -0.725 5.725 7 C 0.520 3.480 8 O -0.529 6.529 9 C -0.123 4.123 10 H 0.118 0.882 11 C -0.149 4.149 12 C 0.521 3.479 13 O -0.523 6.523 14 N -0.615 5.615 15 C 0.153 3.847 16 C -0.136 4.136 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.130 4.130 20 C 0.116 3.884 21 N -0.748 5.748 22 C -0.242 4.242 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.934 5.934 26 Si 0.883 3.117 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.398 0.602 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.092 0.908 50 H 0.085 0.915 51 H 0.360 0.640 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.895 -7.044 26.797 29.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.076 0.924 4 C -0.175 4.175 5 C -0.003 4.003 6 N -0.376 5.376 7 C 0.304 3.696 8 O -0.405 6.405 9 C -0.145 4.145 10 H 0.136 0.864 11 C -0.189 4.189 12 C 0.308 3.692 13 O -0.399 6.399 14 N -0.349 5.349 15 C 0.051 3.949 16 C -0.175 4.175 17 C -0.158 4.158 18 C -0.158 4.158 19 C -0.169 4.169 20 C -0.007 4.007 21 N -0.391 5.391 22 C -0.372 4.372 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.581 5.581 26 Si 0.714 3.286 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.232 0.768 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.110 0.890 50 H 0.103 0.897 51 H 0.193 0.807 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.557 -7.060 26.283 29.191 hybrid contribution -0.109 -1.353 0.086 1.360 sum 10.448 -8.413 26.369 29.585 Atomic orbital electron populations 1.22395 0.98582 1.00871 1.00547 1.20125 0.92090 0.95875 0.84956 0.92387 1.22114 0.93858 1.01769 0.99736 1.21508 0.94465 0.97568 0.86792 1.46093 1.07019 1.56854 1.27606 1.20019 0.82752 0.80495 0.86343 1.90769 1.55161 1.45417 1.49168 1.22240 0.97119 0.96143 0.98986 0.86413 1.22399 0.98838 0.93173 1.04499 1.20657 0.84941 0.85577 0.78011 1.90723 1.84022 1.16859 1.48298 1.48506 1.11343 1.14263 1.60776 1.21700 0.82133 0.98085 0.92985 1.22758 1.00295 0.96354 0.98056 1.22422 0.98144 1.00217 0.95009 1.22294 0.99328 0.96448 0.97700 1.22478 1.02049 0.97247 0.95090 1.22007 0.92925 0.84908 1.00855 1.42822 1.79687 1.09409 1.07223 1.19052 1.37007 0.95587 0.85549 0.89180 1.24666 1.01408 0.97404 0.95604 1.69697 1.52632 1.35531 1.00267 0.86571 0.78050 0.86941 0.77035 1.21212 1.21788 1.20410 0.92212 0.94225 0.93626 0.91371 0.91691 0.90123 0.91206 0.76818 0.87187 0.87200 0.88873 0.90211 0.91297 0.91538 0.91379 0.91910 0.90811 0.91309 0.91222 0.88961 0.89691 0.80717 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.49 37.16 0.35 -2.27 16 2 C 0.18 3.12 2.89 -67.93 -0.20 2.93 16 3 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 4 C -0.14 -1.77 4.87 -26.73 -0.13 -1.90 16 5 C 0.12 1.69 5.56 -4.04 -0.02 1.67 16 6 N -0.72 -7.66 5.51 -60.29 -0.33 -7.99 16 7 C 0.52 6.00 7.07 -10.98 -0.08 5.93 16 8 O -0.53 -8.58 15.57 5.56 0.09 -8.49 16 9 C -0.12 -0.95 3.54 -90.14 -0.32 -1.27 16 10 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 11 C -0.15 -1.20 6.37 -26.74 -0.17 -1.37 16 12 C 0.52 5.51 6.84 -10.86 -0.07 5.43 16 13 O -0.52 -7.12 15.91 5.55 0.09 -7.03 16 14 N -0.61 -5.55 2.83 -163.58 -0.46 -6.01 16 15 C 0.15 1.24 3.54 -66.81 -0.24 1.00 16 16 C -0.14 -1.19 6.30 -25.02 -0.16 -1.35 16 17 C -0.12 -0.89 6.91 -24.70 -0.17 -1.06 16 18 C -0.12 -0.95 6.83 -25.07 -0.17 -1.12 16 19 C -0.13 -1.00 6.01 -25.61 -0.15 -1.16 16 20 C 0.12 0.97 6.63 -3.12 -0.02 0.95 16 21 N -0.75 -16.72 4.38 -53.43 -0.23 -16.95 16 22 C -0.24 -6.65 10.41 -15.06 -0.16 -6.80 16 23 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 24 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 25 N -0.93 -29.27 13.97 55.49 0.78 -28.49 16 26 Si 0.88 22.16 27.74 -169.99 -4.71 17.45 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 29 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.45 7.75 -51.93 -0.40 1.05 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.40 2.86 8.47 -40.82 -0.35 2.51 16 38 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.11 0.98 7.89 -51.92 -0.41 0.57 16 40 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 41 H 0.08 0.90 6.48 -51.93 -0.34 0.57 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.64 7.34 -51.93 -0.38 0.26 16 49 H 0.09 0.96 7.06 -51.93 -0.37 0.59 16 50 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.36 7.99 5.66 -40.82 -0.23 7.76 16 52 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 410.64 15.07 6.19 6.19 Total: -1.00 -34.81 410.64 -9.65 -44.46 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -9.24 Total: 7.21 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.80 Total: -0.34 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.25 Total: -59.45 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: 0.17 Total: -15.52 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.81 -9.65 -44.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663008100.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.150 kcal (2) G-P(sol) polarization free energy of solvation -34.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds