Wall clock time and date at job start Tue Mar 31 2020 20:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.53005 * 109.46991 * 184.99870 * 4 2 1 6 6 N 1.46496 * 109.46653 * 179.97438 * 5 4 2 7 7 C 1.34786 * 119.99884 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99706 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00179 * 180.02562 * 7 6 5 10 10 H 1.08997 * 110.85651 * 297.66952 * 9 7 6 11 11 C 1.54629 * 110.96950 * 61.45709 * 9 7 6 12 12 C 1.51278 * 104.19787 * 142.91537 * 11 9 7 13 13 O 1.21286 * 124.94235 * 163.78419 * 12 11 9 14 14 N 1.34419 * 110.11464 * 343.74845 * 12 11 9 15 15 C 1.46496 * 124.34971 * 179.57324 * 14 12 11 16 16 C 1.54271 * 110.03265 * 57.88006 * 15 14 12 17 17 C 1.54971 * 104.15691 * 217.13719 * 16 15 14 18 18 C 1.54886 * 102.77670 * 37.89084 * 17 16 15 19 19 C 1.53872 * 110.03174 * 300.66331 * 15 14 12 20 20 C 1.46761 * 111.30144 * 359.58968 * 14 12 11 21 21 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 22 22 C 1.36945 * 119.99649 * 85.00202 * 21 2 1 23 23 H 1.07997 * 120.00244 * 359.97438 * 22 21 2 24 24 C 1.38812 * 119.99544 * 180.02562 * 22 21 2 25 25 N 1.31625 * 119.99618 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00424 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47074 * 90.00007 * 26 24 22 28 28 H 1.48499 * 109.46948 * 210.00030 * 26 24 22 29 29 H 1.48495 * 109.46973 * 329.99849 * 26 24 22 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 34 34 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 35 35 H 1.08996 * 109.46933 * 299.99587 * 5 4 2 36 36 H 1.09006 * 109.47013 * 60.00029 * 5 4 2 37 37 H 0.97002 * 120.00465 * 0.02562 * 6 5 4 38 38 H 1.09000 * 110.48926 * 261.59536 * 11 9 7 39 39 H 1.09008 * 110.48363 * 24.23574 * 11 9 7 40 40 H 1.09000 * 110.01852 * 179.26984 * 15 14 12 41 41 H 1.08990 * 110.48670 * 335.78472 * 16 15 14 42 42 H 1.08997 * 110.48512 * 98.42993 * 16 15 14 43 43 H 1.09003 * 110.72002 * 279.57273 * 17 16 15 44 44 H 1.09005 * 110.91965 * 156.30099 * 17 16 15 45 45 H 1.09004 * 110.48079 * 203.40152 * 18 17 16 46 46 H 1.08997 * 110.48888 * 80.75969 * 18 17 16 47 47 H 1.09002 * 110.03623 * 238.56967 * 19 15 14 48 48 H 1.08999 * 110.03419 * 0.02562 * 19 15 14 49 49 H 1.09000 * 110.24784 * 258.01934 * 20 14 12 50 50 H 1.09003 * 110.24427 * 136.01422 * 20 14 12 51 51 H 0.96996 * 120.00792 * 265.00493 * 21 2 1 52 52 H 0.97001 * 120.00319 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3137 6 7 4.0531 -1.3035 2.5101 7 6 5.3741 -1.3397 2.7754 8 8 6.1584 -0.8005 2.0238 9 6 5.8764 -2.0500 4.0058 10 1 5.4877 -1.5818 4.9101 11 6 5.5166 -3.5533 3.9626 12 6 6.7164 -4.2398 4.5770 13 8 6.7300 -5.3820 4.9845 14 7 7.7656 -3.3999 4.6048 15 6 9.0841 -3.7418 5.1440 16 6 9.6543 -4.9708 4.4061 17 6 10.3896 -5.7694 5.5121 18 6 9.4606 -5.5911 6.7385 19 6 8.9613 -4.1358 6.6264 20 6 7.4204 -2.0962 4.0259 21 7 2.0183 -0.6907 -1.1961 22 6 2.1491 -0.0075 -2.3757 23 1 1.8919 1.0403 -2.4244 24 6 2.6113 -0.6621 -3.5092 25 7 2.7375 -0.0054 -4.6429 26 14 3.0556 -2.4746 -3.4253 27 1 1.8582 -3.2930 -3.7441 28 1 4.1306 -2.7667 -4.4073 29 1 3.5312 -2.8048 -2.0579 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6055 -0.2618 2.1370 34 1 1.7516 -1.7716 1.2057 35 1 3.9994 -1.0729 0.4260 36 1 3.8532 0.4370 1.3573 37 1 3.4257 -1.7350 3.1111 38 1 4.6215 -3.7485 4.5532 39 1 5.3747 -3.8821 2.9330 40 1 9.7618 -2.8948 5.0377 41 1 8.8484 -5.5663 3.9776 42 1 10.3538 -4.6593 3.6304 43 1 11.3732 -5.3421 5.7071 44 1 10.4741 -6.8219 5.2412 45 1 10.0191 -5.7327 7.6638 46 1 8.6231 -6.2868 6.6871 47 1 9.5801 -3.4805 7.2395 48 1 7.9206 -4.0730 6.9445 49 1 7.8133 -2.0176 3.0123 50 1 7.8137 -1.2916 4.6473 51 1 2.2490 -1.6318 -1.1526 52 1 3.0609 -0.4626 -5.4349 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663008100.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:14 Heat of formation + Delta-G solvation = -95.924078 kcal Electronic energy + Delta-G solvation = -29554.472768 eV Core-core repulsion = 25552.381070 eV Total energy + Delta-G solvation = -4002.091698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.04459 -40.54640 -38.42829 -38.27433 -37.15744 -35.88680 -34.22421 -33.21499 -31.56548 -29.81298 -29.67534 -28.71446 -28.37644 -25.70610 -24.74242 -23.25860 -22.50729 -21.76967 -21.61984 -21.01543 -19.80927 -19.62574 -18.51912 -17.88067 -17.23732 -17.01499 -16.94280 -16.34761 -16.22765 -15.85193 -15.79120 -15.39535 -15.22740 -14.95021 -14.67744 -14.60280 -14.31583 -14.30250 -14.23189 -13.87535 -13.69964 -13.52400 -12.90854 -12.71946 -12.67311 -12.59600 -12.58891 -12.31825 -12.25114 -12.19024 -12.05623 -12.03099 -11.98342 -11.86804 -11.77214 -11.58561 -11.47764 -11.07291 -10.96854 -10.64921 -10.09639 -9.70154 -9.27983 -8.00679 -5.31935 1.35238 1.38968 1.45459 1.49881 1.56722 1.84082 2.21888 2.48382 3.16424 3.29727 3.31754 3.63465 3.64511 3.65148 3.74677 3.84945 4.00023 4.00401 4.14539 4.22445 4.33823 4.36879 4.45161 4.46755 4.55822 4.56732 4.61599 4.67726 4.73566 4.77383 4.79638 4.87174 4.87370 4.91779 4.97943 5.04057 5.05637 5.10497 5.18122 5.21389 5.23544 5.39389 5.45190 5.46008 5.61166 5.67914 5.81926 6.08990 6.24227 6.55597 7.11613 7.11845 7.25255 7.89353 8.06064 9.21363 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016260 B = 0.002266 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.601969 B =12351.602320 C =13154.286671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.167 3.833 3 H 0.043 0.957 4 C -0.119 4.119 5 C 0.126 3.874 6 N -0.708 5.708 7 C 0.519 3.481 8 O -0.581 6.581 9 C -0.105 4.105 10 H 0.158 0.842 11 C -0.142 4.142 12 C 0.511 3.489 13 O -0.560 6.560 14 N -0.611 5.611 15 C 0.146 3.854 16 C -0.139 4.139 17 C -0.116 4.116 18 C -0.120 4.120 19 C -0.125 4.125 20 C 0.115 3.885 21 N -0.750 5.750 22 C -0.218 4.218 23 H 0.057 0.943 24 C -0.069 4.069 25 N -0.987 5.987 26 Si 0.951 3.049 27 H -0.277 1.277 28 H -0.303 1.303 29 H -0.254 1.254 30 H 0.026 0.974 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.054 0.946 37 H 0.420 0.580 38 H 0.139 0.861 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.046 0.954 47 H 0.091 0.909 48 H 0.054 0.946 49 H 0.068 0.932 50 H 0.109 0.891 51 H 0.363 0.637 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.573 -7.773 30.591 32.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.059 3.941 3 H 0.061 0.939 4 C -0.157 4.157 5 C 0.002 3.998 6 N -0.361 5.361 7 C 0.305 3.695 8 O -0.461 6.461 9 C -0.126 4.126 10 H 0.175 0.825 11 C -0.182 4.182 12 C 0.300 3.700 13 O -0.439 6.439 14 N -0.344 5.344 15 C 0.044 3.956 16 C -0.177 4.177 17 C -0.154 4.154 18 C -0.158 4.158 19 C -0.163 4.163 20 C -0.008 4.008 21 N -0.395 5.395 22 C -0.350 4.350 23 H 0.075 0.925 24 C -0.260 4.260 25 N -0.638 5.638 26 Si 0.779 3.221 27 H -0.204 1.204 28 H -0.230 1.230 29 H -0.179 1.179 30 H 0.046 0.954 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.129 0.871 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.257 0.743 38 H 0.157 0.843 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.098 0.902 46 H 0.065 0.935 47 H 0.110 0.890 48 H 0.073 0.927 49 H 0.086 0.914 50 H 0.127 0.873 51 H 0.197 0.803 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.190 -7.794 30.174 32.788 hybrid contribution -0.013 -1.017 -1.050 1.462 sum 10.177 -8.811 29.124 32.084 Atomic orbital electron populations 1.22255 0.96823 1.01524 1.00897 1.20451 0.93243 0.95381 0.85053 0.93932 1.21964 0.92597 1.02470 0.98693 1.21176 0.95300 0.96586 0.86717 1.45855 1.07328 1.56203 1.26671 1.20646 0.82437 0.79674 0.86741 1.90761 1.56474 1.47724 1.51108 1.22193 0.96522 0.95586 0.98294 0.82475 1.22405 0.98915 0.92756 1.04149 1.21096 0.85991 0.85273 0.77650 1.90707 1.84760 1.18425 1.50029 1.48606 1.11455 1.14298 1.60014 1.21911 0.82126 0.98473 0.93127 1.22744 0.99606 0.96627 0.98731 1.22427 0.98830 0.99926 0.94221 1.22271 0.98664 0.96175 0.98665 1.22451 1.01546 0.97359 0.94963 1.22041 0.93559 0.85139 1.00064 1.42859 1.79884 1.09545 1.07166 1.19031 1.34219 0.94386 0.87344 0.92517 1.25460 1.02884 1.02216 0.95403 1.69882 1.55217 1.37549 1.01170 0.85465 0.77514 0.81336 0.77757 1.20355 1.23031 1.17907 0.95439 0.90344 0.92767 0.87124 0.90096 0.94350 0.92753 0.74267 0.84333 0.88205 0.86731 0.93365 0.90710 0.89487 0.91891 0.90244 0.93516 0.89023 0.92720 0.91360 0.87293 0.80339 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.58 9.49 71.98 0.68 -3.90 16 2 C 0.17 5.52 2.89 44.99 0.13 5.65 16 3 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 4 C -0.12 -2.65 4.87 30.60 0.15 -2.51 16 5 C 0.13 3.36 5.56 86.38 0.48 3.84 16 6 N -0.71 -12.84 5.51 -463.05 -2.55 -15.39 16 7 C 0.52 10.92 7.07 87.65 0.62 11.54 16 8 O -0.58 -18.66 15.57 -3.02 -0.05 -18.71 16 9 C -0.10 -1.29 3.54 -10.48 -0.04 -1.32 16 10 H 0.16 0.80 8.14 -2.39 -0.02 0.78 16 11 C -0.14 -1.92 6.37 30.59 0.19 -1.73 16 12 C 0.51 10.24 6.84 87.90 0.60 10.84 16 13 O -0.56 -15.25 15.91 -3.05 -0.05 -15.30 16 14 N -0.61 -10.12 2.83 -790.03 -2.23 -12.36 16 15 C 0.15 2.13 3.54 45.72 0.16 2.29 16 16 C -0.14 -2.37 6.30 31.70 0.20 -2.17 16 17 C -0.12 -1.61 6.91 31.91 0.22 -1.39 16 18 C -0.12 -1.78 6.83 31.67 0.22 -1.56 16 19 C -0.12 -1.69 6.01 31.32 0.19 -1.50 16 20 C 0.11 1.68 6.63 86.83 0.58 2.25 16 21 N -0.75 -33.14 4.38 -322.94 -1.41 -34.55 16 22 C -0.22 -12.29 10.41 84.03 0.87 -11.41 16 23 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 24 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 25 N -0.99 -64.29 13.97 21.65 0.30 -63.98 16 26 Si 0.95 46.45 27.74 68.60 1.90 48.35 16 27 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 28 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 29 H -0.25 -11.25 6.52 99.48 0.65 -10.60 16 30 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.04 1.36 7.75 -2.39 -0.02 1.34 16 36 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.42 4.05 8.47 -92.71 -0.79 3.27 16 38 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.10 1.61 7.89 -2.38 -0.02 1.59 16 40 H 0.11 1.18 8.09 -2.39 -0.02 1.16 16 41 H 0.05 1.13 6.48 -2.39 -0.02 1.12 16 42 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 45 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 46 H 0.05 0.94 8.07 -2.39 -0.02 0.92 16 47 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.05 0.92 7.34 -2.39 -0.02 0.90 16 49 H 0.07 1.38 7.06 -2.39 -0.02 1.36 16 50 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.36 15.55 5.66 -92.71 -0.52 15.02 16 52 H 0.25 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -82.11 410.64 1.18 -80.93 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -0.46 Total: 25.71 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 5.72 Total: 5.30 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -5.90 Total: -126.29 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -0.10 Total: -34.01 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.90 Total: 48.35 kcal Total: -82.11 1.18 -80.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663008100.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.996 kcal (2) G-P(sol) polarization free energy of solvation -82.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds