Wall clock time and date at job start Tue Mar 31 2020 20:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46867 * 2 1 4 4 C 1.52993 * 109.47401 * 119.99970 * 2 1 3 5 5 N 1.46901 * 109.46977 * 295.00337 * 4 2 1 6 6 C 1.46902 * 110.99844 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.47027 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00255 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72353 * 7 6 5 10 10 C 1.37101 * 120.00327 * 180.27606 * 9 7 6 11 11 H 1.08001 * 119.99426 * 0.02562 * 10 9 7 12 12 C 1.38942 * 120.00412 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00005 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00057 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47191 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46534 * 120.00189 * 14 12 10 17 17 H 1.48498 * 109.47283 * 240.00132 * 14 12 10 18 18 C 1.53001 * 109.47291 * 240.00236 * 2 1 3 19 19 N 1.46500 * 109.46914 * 64.99875 * 18 2 1 20 20 C 1.34778 * 119.99532 * 179.97438 * 19 18 2 21 21 O 1.21280 * 120.00501 * 0.02562 * 20 19 18 22 22 C 1.50703 * 119.99941 * 179.97438 * 20 19 18 23 23 C 1.53000 * 109.47302 * 180.02562 * 22 20 19 24 24 H 1.08995 * 109.35805 * 55.27448 * 23 22 20 25 25 C 1.50069 * 109.35635 * 295.68952 * 23 22 20 26 26 C 1.29445 * 124.07513 * 222.66736 * 25 23 22 27 27 C 1.50065 * 124.07625 * 0.46127 * 26 25 23 28 28 C 1.53022 * 110.14818 * 342.87406 * 27 26 25 29 29 C 1.53024 * 109.35935 * 175.00175 * 23 22 20 30 30 H 1.08997 * 109.47455 * 299.99922 * 1 2 3 31 31 H 1.09000 * 109.47007 * 59.99806 * 1 2 3 32 32 H 1.08993 * 109.46935 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47854 * 175.00226 * 4 2 1 34 34 H 1.09005 * 109.47140 * 55.00107 * 4 2 1 35 35 H 1.00902 * 111.00235 * 56.04818 * 5 4 2 36 36 H 1.09004 * 109.47131 * 60.00016 * 6 5 4 37 37 H 1.09000 * 109.47732 * 300.00127 * 6 5 4 38 38 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 39 39 H 0.96996 * 120.00330 * 179.97438 * 13 12 10 40 40 H 1.08997 * 109.47156 * 184.99692 * 18 2 1 41 41 H 1.09002 * 109.47035 * 304.99816 * 18 2 1 42 42 H 0.96991 * 120.00585 * 359.97438 * 19 18 2 43 43 H 1.09003 * 109.47262 * 300.00537 * 22 20 19 44 44 H 1.09002 * 109.46979 * 60.00174 * 22 20 19 45 45 H 1.08006 * 117.96065 * 42.63710 * 25 23 22 46 46 H 1.08005 * 117.95785 * 180.44414 * 26 25 23 47 47 H 1.09001 * 109.36000 * 222.66870 * 27 26 25 48 48 H 1.09001 * 109.35807 * 103.08096 * 27 26 25 49 49 H 1.09002 * 109.64449 * 289.75456 * 28 27 26 50 50 H 1.09000 * 109.81930 * 169.22022 * 28 27 26 51 51 H 1.09002 * 109.64246 * 289.32618 * 29 23 22 52 52 H 1.09004 * 109.64182 * 49.95533 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6514 0.0375 2.4456 6 6 2.1248 -0.6271 3.6671 7 6 1.7088 0.1787 4.8708 8 8 1.0794 1.2053 4.7254 9 7 2.0308 -0.2446 6.1092 10 6 1.6475 0.4854 7.2045 11 1 1.0871 1.3996 7.0749 12 6 1.9800 0.0494 8.4812 13 7 2.6623 -1.0626 8.6388 14 14 1.4583 1.0445 9.9735 15 1 0.7069 2.2459 9.5293 16 1 0.5900 0.2122 10.8445 17 1 2.6626 1.4662 10.7330 18 6 2.0400 -0.7212 -1.2493 19 7 1.6524 0.0355 -2.4424 20 6 1.9965 -0.4129 -3.6659 21 8 2.6266 -1.4430 -3.7793 22 6 1.5974 0.3651 -4.8933 23 6 2.1075 -0.3561 -6.1425 24 1 1.7396 -1.3821 -6.1430 25 6 3.6081 -0.3687 -6.1316 26 6 4.3429 -0.1356 -7.1715 27 6 3.7971 0.1895 -8.5310 28 6 2.3210 -0.2054 -8.6146 29 6 1.5956 0.3670 -7.3902 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1263 -0.7994 1.2056 34 1 1.6054 -1.7198 1.2951 35 1 0.6528 0.1793 2.4753 36 1 3.2117 -0.7050 3.6405 37 1 1.6905 -1.6249 3.7297 38 1 2.5339 -1.0657 6.2256 39 1 2.8947 -1.3669 9.5299 40 1 3.1263 -0.7994 -1.2056 41 1 1.6054 -1.7198 -1.2952 42 1 1.1483 0.8591 -2.3518 43 1 0.5110 0.4425 -4.9370 44 1 2.0312 1.3640 -4.8473 45 1 4.1059 -0.5853 -5.1979 46 1 5.4157 -0.1775 -7.0532 47 1 4.3607 -0.3572 -9.2870 48 1 3.8956 1.2596 -8.7135 49 1 2.2320 -1.2917 -8.6185 50 1 1.8806 0.2016 -9.5248 51 1 0.5222 0.2066 -7.4922 52 1 1.8034 1.4338 -7.3067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666568708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:58 Heat of formation + Delta-G solvation = -86.784956 kcal Electronic energy + Delta-G solvation = -27845.178596 eV Core-core repulsion = 23843.483200 eV Total energy + Delta-G solvation = -4001.695396 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.36944 -38.73164 -38.33189 -37.20977 -34.89911 -33.87040 -33.12847 -32.21413 -31.33383 -31.19200 -28.23196 -27.41688 -26.42200 -24.77334 -23.30467 -22.68234 -22.29894 -20.81381 -20.15667 -19.21536 -18.29253 -17.90263 -17.26548 -16.69184 -16.37489 -15.88180 -15.84562 -15.55620 -14.94792 -14.61209 -14.52220 -14.46282 -14.16780 -13.85692 -13.72284 -13.41702 -13.27508 -13.03976 -13.01645 -12.76457 -12.67172 -12.61149 -12.44691 -12.08373 -11.84968 -11.59194 -11.54842 -11.26917 -11.20142 -11.09395 -10.98605 -10.92276 -10.90315 -10.49049 -10.34779 -10.22964 -9.94313 -9.52513 -9.31076 -9.24775 -8.47077 -8.07347 -7.96339 -6.42171 -3.83076 2.06281 2.40829 2.90824 3.15985 3.26580 3.33809 3.90492 4.08589 4.25043 4.30461 4.31903 4.38905 4.56545 4.69797 4.75234 4.76601 4.86342 4.89730 5.03203 5.05289 5.12739 5.18982 5.25201 5.26936 5.29629 5.35284 5.36962 5.42816 5.52999 5.54593 5.56134 5.59586 5.69244 5.71320 5.78920 5.84583 5.94136 5.97817 5.98125 6.05197 6.12362 6.22386 6.26918 6.45204 6.70736 7.19528 7.23095 7.54964 7.64925 7.98219 8.06141 8.60772 9.17488 9.53990 10.05242 10.75648 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.042260 B = 0.001322 C = 0.001308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.412924 B =21169.796172 C =21408.783111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.102 4.102 3 H 0.089 0.911 4 C 0.066 3.934 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.104 0.896 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 C 0.125 3.875 19 N -0.729 5.729 20 C 0.510 3.490 21 O -0.538 6.538 22 C -0.135 4.135 23 C -0.043 4.043 24 H 0.087 0.913 25 C -0.136 4.136 26 C -0.169 4.169 27 C -0.090 4.090 28 C -0.120 4.120 29 C -0.116 4.116 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.349 0.651 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.401 0.599 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.100 0.900 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.064 0.936 50 H 0.065 0.935 51 H 0.066 0.934 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.392 0.217 -32.189 32.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.121 4.121 3 H 0.107 0.893 4 C -0.064 4.064 5 N -0.302 5.302 6 C -0.083 4.083 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 C 0.001 3.999 19 N -0.381 5.381 20 C 0.297 3.703 21 O -0.415 6.415 22 C -0.175 4.175 23 C -0.061 4.061 24 H 0.105 0.895 25 C -0.154 4.154 26 C -0.187 4.187 27 C -0.127 4.127 28 C -0.158 4.158 29 C -0.154 4.154 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.169 0.831 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.226 0.774 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.235 0.765 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.129 0.871 46 H 0.118 0.882 47 H 0.086 0.914 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.083 0.917 51 H 0.085 0.915 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.756 0.492 -32.196 32.209 hybrid contribution -0.586 -0.517 1.189 1.423 sum -1.342 -0.025 -31.007 31.036 Atomic orbital electron populations 1.21896 0.94759 1.02018 1.02268 1.21363 0.96426 1.01161 0.93114 0.89312 1.21882 1.00774 0.94411 0.89362 1.60104 1.21011 1.49024 1.00020 1.21675 1.01208 0.95373 0.90017 1.19813 0.85617 0.87914 0.84041 1.90517 1.44371 1.26214 1.85730 1.41873 1.49556 1.24202 1.04400 1.19759 1.32780 1.06783 0.83574 0.87862 1.25262 0.96917 0.96637 0.99114 1.69620 1.38974 1.21735 1.23965 0.85802 0.78297 0.79565 0.80692 1.19208 1.20778 1.20734 1.21368 1.00198 0.95213 0.83155 1.46073 1.58095 1.27999 1.05963 1.20706 0.79222 0.85776 0.84628 1.90710 1.39586 1.24527 1.86676 1.21726 1.02891 1.00377 0.92460 1.19831 0.93539 1.00071 0.92687 0.89475 1.22182 0.95005 0.99225 0.98986 1.22035 0.99412 1.02493 0.94785 1.20433 0.95746 1.01185 0.95341 1.21590 0.95221 1.01174 0.97791 1.21679 0.99652 1.00019 0.94038 0.91421 0.92757 0.92682 0.90791 0.95204 0.83084 0.89564 0.93846 0.77448 0.91918 0.91313 0.91461 0.76464 0.88637 0.88711 0.87124 0.88179 0.91372 0.91147 0.91715 0.91671 0.91539 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.84 37.16 0.33 -1.01 16 2 C -0.10 -0.96 2.63 -90.62 -0.24 -1.20 16 3 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.07 0.77 5.14 -3.83 -0.02 0.75 16 5 N -0.67 -10.47 6.12 -115.06 -0.70 -11.18 16 6 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 7 C 0.44 10.40 7.82 -10.98 -0.09 10.32 16 8 O -0.58 -15.81 15.78 5.55 0.09 -15.72 16 9 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 10 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 11 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 14 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 15 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 C 0.12 1.14 5.06 -4.04 -0.02 1.12 16 19 N -0.73 -5.66 5.28 -60.29 -0.32 -5.98 16 20 C 0.51 4.67 7.46 -10.98 -0.08 4.59 16 21 O -0.54 -7.01 14.24 5.56 0.08 -6.93 16 22 C -0.13 -0.81 5.14 -27.88 -0.14 -0.96 16 23 C -0.04 -0.31 2.12 -92.06 -0.19 -0.50 16 24 H 0.09 0.76 7.96 -51.93 -0.41 0.34 16 25 C -0.14 -1.20 8.41 -35.90 -0.30 -1.50 16 26 C -0.17 -1.33 9.80 -35.90 -0.35 -1.68 16 27 C -0.09 -0.55 6.11 -28.18 -0.17 -0.72 16 28 C -0.12 -0.67 6.01 -26.52 -0.16 -0.83 16 29 C -0.12 -0.63 5.30 -26.51 -0.14 -0.77 16 30 H 0.07 0.69 6.68 -51.93 -0.35 0.35 16 31 H 0.05 0.38 7.18 -51.93 -0.37 0.01 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.35 5.60 6.68 -39.29 -0.26 5.34 16 36 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.40 2.20 7.65 -40.82 -0.31 1.88 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.11 1.19 6.47 -52.48 -0.34 0.85 16 46 H 0.10 0.75 8.06 -52.48 -0.42 0.32 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.40 8.12 -51.93 -0.42 -0.02 16 50 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 51 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 52 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 LS Contribution 416.11 15.07 6.27 6.27 Total: -1.00 -33.07 416.11 -9.86 -42.93 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -9.06 Total: 12.38 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -1.85 Total: 0.44 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.36 Total: -55.36 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.17 Total: -22.66 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.07 -9.86 -42.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666568708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.855 kcal (2) G-P(sol) polarization free energy of solvation -33.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds