Wall clock time and date at job start Tue Mar 31 2020 20:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46867 * 2 1 4 4 C 1.52993 * 109.47401 * 119.99970 * 2 1 3 5 5 N 1.46901 * 109.46977 * 295.00337 * 4 2 1 6 6 C 1.46902 * 110.99844 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.47027 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00255 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72353 * 7 6 5 10 10 C 1.37101 * 120.00327 * 180.27606 * 9 7 6 11 11 H 1.08001 * 119.99426 * 0.02562 * 10 9 7 12 12 C 1.38942 * 120.00412 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00005 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00057 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47191 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46534 * 120.00189 * 14 12 10 17 17 H 1.48498 * 109.47283 * 240.00132 * 14 12 10 18 18 C 1.53001 * 109.47291 * 240.00236 * 2 1 3 19 19 N 1.46500 * 109.46914 * 64.99875 * 18 2 1 20 20 C 1.34778 * 119.99532 * 179.97438 * 19 18 2 21 21 O 1.21280 * 120.00501 * 0.02562 * 20 19 18 22 22 C 1.50703 * 119.99941 * 179.97438 * 20 19 18 23 23 C 1.53000 * 109.47302 * 180.02562 * 22 20 19 24 24 H 1.08995 * 109.35805 * 55.27448 * 23 22 20 25 25 C 1.50069 * 109.35635 * 295.68952 * 23 22 20 26 26 C 1.29445 * 124.07513 * 222.66736 * 25 23 22 27 27 C 1.50065 * 124.07625 * 0.46127 * 26 25 23 28 28 C 1.53022 * 110.14818 * 342.87406 * 27 26 25 29 29 C 1.53024 * 109.35935 * 175.00175 * 23 22 20 30 30 H 1.08997 * 109.47455 * 299.99922 * 1 2 3 31 31 H 1.09000 * 109.47007 * 59.99806 * 1 2 3 32 32 H 1.08993 * 109.46935 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47854 * 175.00226 * 4 2 1 34 34 H 1.09005 * 109.47140 * 55.00107 * 4 2 1 35 35 H 1.00902 * 111.00235 * 56.04818 * 5 4 2 36 36 H 1.09004 * 109.47131 * 60.00016 * 6 5 4 37 37 H 1.09000 * 109.47732 * 300.00127 * 6 5 4 38 38 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 39 39 H 0.96996 * 120.00330 * 179.97438 * 13 12 10 40 40 H 1.08997 * 109.47156 * 184.99692 * 18 2 1 41 41 H 1.09002 * 109.47035 * 304.99816 * 18 2 1 42 42 H 0.96991 * 120.00585 * 359.97438 * 19 18 2 43 43 H 1.09003 * 109.47262 * 300.00537 * 22 20 19 44 44 H 1.09002 * 109.46979 * 60.00174 * 22 20 19 45 45 H 1.08006 * 117.96065 * 42.63710 * 25 23 22 46 46 H 1.08005 * 117.95785 * 180.44414 * 26 25 23 47 47 H 1.09001 * 109.36000 * 222.66870 * 27 26 25 48 48 H 1.09001 * 109.35807 * 103.08096 * 27 26 25 49 49 H 1.09002 * 109.64449 * 289.75456 * 28 27 26 50 50 H 1.09000 * 109.81930 * 169.22022 * 28 27 26 51 51 H 1.09002 * 109.64246 * 289.32618 * 29 23 22 52 52 H 1.09004 * 109.64182 * 49.95533 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6514 0.0375 2.4456 6 6 2.1248 -0.6271 3.6671 7 6 1.7088 0.1787 4.8708 8 8 1.0794 1.2053 4.7254 9 7 2.0308 -0.2446 6.1092 10 6 1.6475 0.4854 7.2045 11 1 1.0871 1.3996 7.0749 12 6 1.9800 0.0494 8.4812 13 7 2.6623 -1.0626 8.6388 14 14 1.4583 1.0445 9.9735 15 1 0.7069 2.2459 9.5293 16 1 0.5900 0.2122 10.8445 17 1 2.6626 1.4662 10.7330 18 6 2.0400 -0.7212 -1.2493 19 7 1.6524 0.0355 -2.4424 20 6 1.9965 -0.4129 -3.6659 21 8 2.6266 -1.4430 -3.7793 22 6 1.5974 0.3651 -4.8933 23 6 2.1075 -0.3561 -6.1425 24 1 1.7396 -1.3821 -6.1430 25 6 3.6081 -0.3687 -6.1316 26 6 4.3429 -0.1356 -7.1715 27 6 3.7971 0.1895 -8.5310 28 6 2.3210 -0.2054 -8.6146 29 6 1.5956 0.3670 -7.3902 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1263 -0.7994 1.2056 34 1 1.6054 -1.7198 1.2951 35 1 0.6528 0.1793 2.4753 36 1 3.2117 -0.7050 3.6405 37 1 1.6905 -1.6249 3.7297 38 1 2.5339 -1.0657 6.2256 39 1 2.8947 -1.3669 9.5299 40 1 3.1263 -0.7994 -1.2056 41 1 1.6054 -1.7198 -1.2952 42 1 1.1483 0.8591 -2.3518 43 1 0.5110 0.4425 -4.9370 44 1 2.0312 1.3640 -4.8473 45 1 4.1059 -0.5853 -5.1979 46 1 5.4157 -0.1775 -7.0532 47 1 4.3607 -0.3572 -9.2870 48 1 3.8956 1.2596 -8.7135 49 1 2.2320 -1.2917 -8.6185 50 1 1.8806 0.2016 -9.5248 51 1 0.5222 0.2066 -7.4922 52 1 1.8034 1.4338 -7.3067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666568708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:57 Heat of formation + Delta-G solvation = -109.730519 kcal Electronic energy + Delta-G solvation = -27846.173591 eV Core-core repulsion = 23843.483200 eV Total energy + Delta-G solvation = -4002.690390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.06211 -40.19059 -39.25806 -38.23017 -36.17316 -35.63356 -33.77786 -33.32939 -32.99747 -31.85857 -29.04682 -28.56640 -27.31799 -26.34295 -24.48956 -23.22871 -22.89331 -21.57207 -21.20998 -20.77262 -19.90687 -18.83231 -18.05451 -17.83344 -17.25578 -17.07520 -16.70201 -16.56223 -16.41303 -15.99457 -15.69572 -15.35374 -15.15084 -15.05920 -14.70555 -14.48033 -14.24800 -13.96402 -13.75644 -13.57188 -13.52213 -13.45633 -13.30823 -13.18046 -13.09236 -12.96490 -12.80383 -12.41043 -12.35324 -12.11932 -12.05713 -11.84786 -11.75542 -11.70700 -11.51674 -11.41820 -11.04345 -10.65605 -10.35003 -10.04345 -10.02059 -9.86149 -9.33784 -8.47179 -5.96123 1.36635 1.42056 1.42954 1.56344 1.71375 2.04321 2.21703 2.30553 2.95490 3.20193 3.53110 3.71040 3.82503 3.86877 3.90590 3.96671 4.00203 4.06709 4.30632 4.32233 4.41684 4.46370 4.51260 4.52918 4.55300 4.56963 4.58315 4.71577 4.75817 4.79022 4.82991 4.87168 4.91649 4.95806 5.01574 5.08950 5.11635 5.23978 5.27206 5.36374 5.40865 5.43606 5.49190 5.53109 5.82827 5.87947 6.09224 6.10254 6.41147 6.59342 6.61084 7.12032 7.32245 7.55517 8.10434 8.70468 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.042260 B = 0.001322 C = 0.001308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.412924 B =21169.796172 C =21408.783111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 H 0.085 0.915 4 C 0.065 3.935 5 N -0.680 5.680 6 C 0.063 3.937 7 C 0.437 3.563 8 O -0.622 6.622 9 N -0.573 5.573 10 C -0.334 4.334 11 H 0.080 0.920 12 C -0.012 4.012 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.272 1.272 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.133 3.867 19 N -0.719 5.719 20 C 0.506 3.494 21 O -0.583 6.583 22 C -0.127 4.127 23 C -0.042 4.042 24 H 0.067 0.933 25 C -0.152 4.152 26 C -0.169 4.169 27 C -0.090 4.090 28 C -0.122 4.122 29 C -0.111 4.111 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.040 0.960 35 H 0.345 0.655 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.396 0.604 39 H 0.278 0.722 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.414 0.586 43 H 0.123 0.877 44 H 0.112 0.888 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.054 0.946 50 H 0.081 0.919 51 H 0.081 0.919 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.143 0.871 -33.447 33.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 H 0.104 0.896 4 C -0.064 4.064 5 N -0.314 5.314 6 C -0.069 4.069 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.210 5.210 10 C -0.464 4.464 11 H 0.098 0.902 12 C -0.212 4.212 13 N -0.562 5.562 14 Si 0.817 3.183 15 H -0.197 1.197 16 H -0.196 1.196 17 H -0.197 1.197 18 C 0.008 3.992 19 N -0.372 5.372 20 C 0.294 3.706 21 O -0.463 6.463 22 C -0.167 4.167 23 C -0.060 4.060 24 H 0.085 0.915 25 C -0.170 4.170 26 C -0.187 4.187 27 C -0.127 4.127 28 C -0.159 4.159 29 C -0.149 4.149 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.165 0.835 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.251 0.749 43 H 0.142 0.858 44 H 0.130 0.870 45 H 0.101 0.899 46 H 0.115 0.885 47 H 0.092 0.908 48 H 0.100 0.900 49 H 0.073 0.927 50 H 0.100 0.900 51 H 0.099 0.901 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.506 1.146 -33.464 33.518 hybrid contribution -0.301 -0.745 1.527 1.725 sum -1.807 0.401 -31.937 31.991 Atomic orbital electron populations 1.21871 0.94033 1.02195 1.02560 1.21203 0.96860 1.00567 0.92099 0.89627 1.21970 1.01134 0.94733 0.88554 1.60105 1.20850 1.50002 1.00426 1.21541 1.02218 0.95109 0.88060 1.20870 0.83975 0.87642 0.85024 1.90483 1.45801 1.28128 1.86486 1.41944 1.50064 1.24308 1.04714 1.19723 1.34364 1.07046 0.85258 0.90244 1.26043 0.96416 0.97534 1.01221 1.69679 1.39031 1.22473 1.24997 0.84865 0.78229 0.78008 0.77202 1.19693 1.19581 1.19660 1.21171 0.99424 0.95064 0.83551 1.45984 1.57719 1.28233 1.05260 1.21312 0.78311 0.85359 0.85637 1.90696 1.41634 1.26670 1.87299 1.21761 1.04600 1.00219 0.90080 1.19815 0.92312 0.99525 0.94378 0.91454 1.22152 0.96217 1.00463 0.98161 1.22242 0.99372 1.01431 0.95623 1.20484 0.96220 1.01967 0.94044 1.21621 0.94934 1.00686 0.98699 1.21671 1.00379 1.00133 0.92699 0.92891 0.90680 0.92572 0.90456 0.94197 0.83468 0.87910 0.91647 0.76993 0.91304 0.92458 0.92131 0.74851 0.85849 0.86993 0.89854 0.88502 0.90768 0.89980 0.92741 0.90006 0.90062 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.84 71.98 0.64 -1.77 16 2 C -0.09 -1.55 2.63 -10.80 -0.03 -1.58 16 3 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 4 C 0.07 1.44 5.14 86.30 0.44 1.89 16 5 N -0.68 -20.75 6.12 -517.93 -3.17 -23.92 16 6 C 0.06 2.16 6.17 85.56 0.53 2.69 16 7 C 0.44 20.83 7.82 87.66 0.69 21.52 16 8 O -0.62 -34.39 15.78 -3.07 -0.05 -34.44 16 9 N -0.57 -29.52 5.29 -306.98 -1.62 -31.14 16 10 C -0.33 -19.05 9.68 84.04 0.81 -18.24 16 11 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 12 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 13 N -0.92 -49.80 13.05 21.66 0.28 -49.52 16 14 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 18 C 0.13 2.31 5.06 86.38 0.44 2.75 16 19 N -0.72 -10.20 5.28 -463.05 -2.45 -12.65 16 20 C 0.51 8.92 7.46 87.66 0.65 9.57 16 21 O -0.58 -15.62 14.24 -3.03 -0.04 -15.67 16 22 C -0.13 -1.30 5.14 29.85 0.15 -1.15 16 23 C -0.04 -0.57 2.12 -11.73 -0.02 -0.60 16 24 H 0.07 1.18 7.96 -2.39 -0.02 1.16 16 25 C -0.15 -2.73 8.41 27.04 0.23 -2.50 16 26 C -0.17 -2.62 9.80 27.03 0.27 -2.35 16 27 C -0.09 -0.97 6.11 29.66 0.18 -0.78 16 28 C -0.12 -1.15 6.01 30.73 0.18 -0.96 16 29 C -0.11 -0.96 5.30 30.73 0.16 -0.80 16 30 H 0.05 1.04 6.68 -2.39 -0.02 1.02 16 31 H 0.07 0.88 7.18 -2.39 -0.02 0.87 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.35 10.94 6.68 -89.69 -0.60 10.35 16 36 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 39 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.41 3.59 7.65 -92.71 -0.71 2.88 16 43 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.08 1.94 6.47 -2.91 -0.02 1.92 16 46 H 0.10 1.49 8.06 -2.91 -0.02 1.46 16 47 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.05 0.62 8.12 -2.39 -0.02 0.60 16 50 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 51 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 52 H 0.08 0.54 8.10 -2.38 -0.02 0.52 16 Total: -1.00 -73.18 416.11 -0.35 -73.53 By element: Atomic # 1 Polarization: 42.51 SS G_CDS: -1.12 Total: 41.39 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 5.79 Total: 7.49 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -6.96 Total: -117.23 kcal Atomic # 8 Polarization: -50.01 SS G_CDS: -0.09 Total: -50.11 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -73.18 -0.35 -73.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666568708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.196 kcal (2) G-P(sol) polarization free energy of solvation -73.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds