Wall clock time and date at job start Tue Mar 31 2020 20:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47185 * 2 1 4 4 N 1.46897 * 109.47369 * 239.99801 * 2 1 3 5 5 C 1.46897 * 111.00068 * 84.99831 * 4 2 1 6 6 C 1.50702 * 109.46939 * 180.02562 * 5 4 2 7 7 O 1.21292 * 120.00258 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00069 * 179.97438 * 6 5 4 9 9 C 1.37099 * 120.00267 * 179.97438 * 8 6 5 10 10 H 1.08006 * 119.99516 * 0.02562 * 9 8 6 11 11 C 1.38950 * 120.00334 * 180.02562 * 9 8 6 12 12 N 1.31411 * 119.99991 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99786 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.46845 * 90.00166 * 13 11 9 15 15 H 1.48500 * 109.47212 * 210.00249 * 13 11 9 16 16 H 1.48500 * 109.47205 * 330.00626 * 13 11 9 17 17 C 1.53002 * 109.46903 * 119.99383 * 2 1 3 18 18 H 1.08999 * 110.88303 * 54.55146 * 17 2 1 19 19 C 1.55152 * 111.00605 * 290.62795 * 17 2 1 20 20 C 1.54324 * 102.94407 * 206.42198 * 19 17 2 21 21 N 1.47030 * 107.26834 * 22.19335 * 20 19 17 22 22 C 1.34770 * 125.64596 * 181.09100 * 21 20 19 23 23 O 1.21287 * 120.00104 * 179.97438 * 22 21 20 24 24 C 1.50696 * 120.00409 * 359.96497 * 22 21 20 25 25 C 1.54275 * 110.03129 * 297.16176 * 24 22 21 26 26 C 1.54887 * 104.19650 * 217.10416 * 25 24 22 27 27 C 1.54888 * 102.74819 * 37.94288 * 26 25 24 28 28 C 1.53872 * 110.03743 * 179.97438 * 24 22 21 29 29 C 1.47424 * 108.70271 * 1.05911 * 21 20 19 30 30 H 1.08996 * 109.47043 * 304.62068 * 1 2 3 31 31 H 1.09000 * 109.46874 * 64.61642 * 1 2 3 32 32 H 1.08998 * 109.47032 * 184.61497 * 1 2 3 33 33 H 1.00905 * 110.99842 * 321.04609 * 4 2 1 34 34 H 1.08990 * 109.47069 * 299.99917 * 5 4 2 35 35 H 1.09003 * 109.47190 * 60.00670 * 5 4 2 36 36 H 0.97003 * 119.99869 * 0.02562 * 8 6 5 37 37 H 0.96998 * 119.99080 * 180.02562 * 12 11 9 38 38 H 1.09006 * 110.72338 * 324.78485 * 19 17 2 39 39 H 1.09001 * 110.72274 * 88.06021 * 19 17 2 40 40 H 1.08992 * 109.88619 * 262.77794 * 20 19 17 41 41 H 1.09007 * 110.01309 * 141.67691 * 20 19 17 42 42 H 1.08998 * 110.02083 * 58.60060 * 24 22 21 43 43 H 1.09005 * 110.48385 * 335.78178 * 25 24 22 44 44 H 1.09003 * 110.48810 * 98.42445 * 25 24 22 45 45 H 1.08993 * 110.75512 * 279.62369 * 26 25 24 46 46 H 1.09004 * 110.75256 * 156.25552 * 26 25 24 47 47 H 1.08995 * 110.48568 * 203.37445 * 27 26 25 48 48 H 1.09002 * 110.60123 * 80.78998 * 27 26 25 49 49 H 1.08997 * 110.03296 * 238.56588 * 28 24 22 50 50 H 1.09004 * 110.03062 * 359.97438 * 28 24 22 51 51 H 1.09000 * 110.36282 * 217.03304 * 29 21 20 52 52 H 1.09002 * 110.36858 * 94.71010 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5874 -0.5220 -3.5559 7 8 2.8670 -1.6992 -3.4703 8 7 2.7274 0.1199 -4.7327 9 6 3.1873 -0.5572 -5.8325 10 1 3.4370 -1.6052 -5.7560 11 6 3.3321 0.1047 -7.0456 12 7 3.7724 -0.5445 -8.0999 13 14 2.8995 1.9171 -7.1781 14 1 4.0996 2.7361 -6.8715 15 1 2.4354 2.2157 -8.5568 16 1 1.8196 2.2402 -6.2114 17 6 2.0400 -0.7211 1.2493 18 1 1.6126 -1.7212 1.3224 19 6 1.7442 0.1057 2.5284 20 6 2.8483 -0.3571 3.5022 21 7 3.9462 -0.9021 2.6901 22 6 5.0901 -1.4299 3.1688 23 8 5.9304 -1.8520 2.4027 24 6 5.3254 -1.4956 4.6558 25 6 5.3715 -0.0713 5.2469 26 6 6.4632 -0.1500 6.3428 27 6 7.5244 -1.0786 5.7020 28 6 6.6940 -2.1365 4.9452 29 6 3.5880 -0.7763 1.2656 30 1 -0.3633 0.5838 0.8457 31 1 -0.3633 0.4405 -0.9285 32 1 -0.3633 -1.0243 0.0827 33 1 1.4496 -1.4980 -1.4099 34 1 1.0872 0.6161 -2.5525 35 1 2.7590 1.0461 -2.1182 36 1 2.5035 1.0612 -4.8013 37 1 3.8737 -0.0823 -8.9466 38 1 1.8311 1.1733 2.3263 39 1 0.7568 -0.1340 2.9230 40 1 2.4584 -1.1298 4.1646 41 1 3.2063 0.4885 4.0896 42 1 4.5343 -2.0735 5.1336 43 1 5.6518 0.6510 4.4802 44 1 4.4087 0.1910 5.6857 45 1 6.0634 -0.5921 7.2553 46 1 6.8826 0.8363 6.5417 47 1 8.1329 -1.5514 6.4728 48 1 8.1542 -0.5205 5.0091 49 1 6.5670 -3.0246 5.5642 50 1 7.1879 -2.4005 4.0101 51 1 3.9426 -1.6427 0.7074 52 1 4.0046 0.1409 0.8492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672184073.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:54 Heat of formation + Delta-G solvation = -80.981127 kcal Electronic energy + Delta-G solvation = -29537.642169 eV Core-core repulsion = 25536.198445 eV Total energy + Delta-G solvation = -4001.443723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.60546 -38.94164 -38.22495 -37.06856 -35.98933 -33.94469 -32.29279 -31.62017 -30.07400 -29.75757 -29.02415 -28.28176 -26.49062 -24.25362 -23.83228 -22.13573 -21.29525 -20.95028 -20.40820 -19.34488 -18.94869 -18.29664 -17.64524 -16.50447 -16.00334 -15.78339 -15.65087 -15.48503 -14.84595 -14.74255 -14.49765 -14.30508 -14.13352 -13.71411 -13.55863 -13.44209 -13.21896 -12.87876 -12.86785 -12.50448 -12.42599 -12.23879 -12.08882 -11.92984 -11.71803 -11.62503 -11.47868 -11.40017 -11.39288 -11.16414 -11.12530 -11.03360 -10.98314 -10.78939 -10.75223 -10.58431 -9.95567 -9.79097 -9.55247 -8.72944 -8.57556 -8.17285 -8.11358 -6.28923 -3.80204 2.55498 2.85270 3.02890 3.08025 3.15826 3.76247 3.91883 4.11596 4.13854 4.25045 4.29382 4.33220 4.51447 4.62969 4.78655 4.86783 4.97056 5.02621 5.06426 5.08883 5.12901 5.16562 5.23263 5.23739 5.30014 5.33407 5.36750 5.37691 5.46682 5.54530 5.57294 5.59298 5.62760 5.71010 5.74250 5.76995 5.83127 5.85935 5.95181 5.99092 5.99633 6.06379 6.12734 6.16782 6.28128 7.10614 7.42664 7.57677 7.60645 8.10134 8.17080 8.62016 8.97459 9.44693 9.85218 10.84307 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015656 B = 0.002175 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.040975 B =12871.487136 C =13825.799719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.094 3.906 3 H 0.079 0.921 4 N -0.663 5.663 5 C 0.049 3.951 6 C 0.450 3.550 7 O -0.563 6.563 8 N -0.591 5.591 9 C -0.304 4.304 10 H 0.120 0.880 11 C 0.040 3.960 12 N -0.882 5.882 13 Si 0.880 3.120 14 H -0.271 1.271 15 H -0.277 1.277 16 H -0.270 1.270 17 C -0.086 4.086 18 H 0.084 0.916 19 C -0.127 4.127 20 C 0.100 3.900 21 N -0.621 5.621 22 C 0.530 3.470 23 O -0.533 6.533 24 C -0.109 4.109 25 C -0.114 4.114 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.121 4.121 29 C 0.123 3.877 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.352 0.648 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.370 0.630 37 H 0.273 0.727 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.066 0.934 50 H 0.091 0.909 51 H 0.088 0.912 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.641 6.259 31.035 31.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.017 4.017 3 H 0.098 0.902 4 N -0.295 5.295 5 C -0.084 4.084 6 C 0.235 3.765 7 O -0.444 6.444 8 N -0.231 5.231 9 C -0.433 4.433 10 H 0.137 0.863 11 C -0.163 4.163 12 N -0.522 5.522 13 Si 0.707 3.293 14 H -0.196 1.196 15 H -0.202 1.202 16 H -0.196 1.196 17 C -0.105 4.105 18 H 0.103 0.897 19 C -0.166 4.166 20 C -0.024 4.024 21 N -0.356 5.356 22 C 0.318 3.682 23 O -0.409 6.409 24 C -0.130 4.130 25 C -0.152 4.152 26 C -0.161 4.161 27 C -0.162 4.162 28 C -0.159 4.159 29 C 0.002 3.998 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.172 0.828 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.109 0.891 51 H 0.106 0.894 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.183 5.255 30.613 31.223 hybrid contribution -1.447 1.625 -0.570 2.249 sum -4.630 6.880 30.043 31.166 Atomic orbital electron populations 1.22523 0.97066 1.02421 1.02196 1.21523 0.92486 0.97719 0.89977 0.90238 1.60148 1.57829 1.09122 1.02432 1.21723 0.99864 0.95818 0.90972 1.19725 0.84712 0.88281 0.83755 1.90576 1.53653 1.15996 1.84220 1.42208 1.60234 1.11099 1.09572 1.19435 1.40035 0.98024 0.85770 0.86287 1.25045 0.97556 0.98388 0.95267 1.69626 1.45227 1.36490 1.00828 0.86665 0.78979 0.85228 0.78454 1.19608 1.20220 1.19578 1.22321 0.95224 0.99715 0.93275 0.89722 1.22714 0.98152 1.00622 0.95093 1.22100 0.87561 0.98317 0.94387 1.48552 1.17587 1.60939 1.08472 1.20249 0.80194 0.76827 0.90888 1.90719 1.43402 1.47430 1.59396 1.21905 1.00323 0.98669 0.92097 1.22386 0.99629 0.94925 0.98231 1.22505 0.95983 0.99896 0.97746 1.22372 0.97626 0.97000 0.99197 1.22190 0.93626 0.97864 1.02172 1.22141 0.93823 1.03284 0.80599 0.92080 0.92400 0.92193 0.82762 0.93765 0.89564 0.79749 0.91645 0.90371 0.89980 0.91631 0.91256 0.88710 0.91171 0.90915 0.91273 0.91349 0.91530 0.91460 0.91479 0.89074 0.89351 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 9.00 37.16 0.33 -1.23 16 2 C 0.09 0.96 2.12 -67.71 -0.14 0.82 16 3 H 0.08 0.78 7.70 -51.93 -0.40 0.38 16 4 N -0.66 -9.69 5.49 -108.00 -0.59 -10.28 16 5 C 0.05 0.79 5.96 -4.98 -0.03 0.76 16 6 C 0.45 10.23 7.82 -10.98 -0.09 10.15 16 7 O -0.56 -15.28 15.78 5.55 0.09 -15.19 16 8 N -0.59 -14.20 5.09 -10.96 -0.06 -14.26 16 9 C -0.30 -8.71 10.16 -14.93 -0.15 -8.86 16 10 H 0.12 3.91 7.39 -52.48 -0.39 3.52 16 11 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 12 N -0.88 -26.08 13.96 55.50 0.77 -25.30 16 13 Si 0.88 19.54 27.74 -169.99 -4.71 14.83 16 14 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 17 C -0.09 -0.81 2.75 -88.47 -0.24 -1.05 16 18 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 19 C -0.13 -0.82 5.82 -24.90 -0.14 -0.96 16 20 C 0.10 0.69 6.04 -3.06 -0.02 0.67 16 21 N -0.62 -6.83 3.33 -170.52 -0.57 -7.39 16 22 C 0.53 6.74 7.05 -10.99 -0.08 6.66 16 23 O -0.53 -9.27 15.46 5.55 0.09 -9.18 16 24 C -0.11 -0.95 2.77 -90.65 -0.25 -1.20 16 25 C -0.11 -0.78 4.98 -25.07 -0.12 -0.90 16 26 C -0.12 -0.76 6.91 -24.74 -0.17 -0.93 16 27 C -0.12 -0.93 6.83 -25.05 -0.17 -1.11 16 28 C -0.12 -1.10 6.40 -25.59 -0.16 -1.27 16 29 C 0.12 1.55 6.01 -2.53 -0.02 1.53 16 30 H 0.06 0.41 7.76 -51.93 -0.40 0.01 16 31 H 0.06 0.54 7.36 -51.93 -0.38 0.16 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.35 5.44 8.18 -39.29 -0.32 5.12 16 34 H 0.04 0.62 7.37 -51.93 -0.38 0.23 16 35 H 0.09 1.25 8.06 -51.93 -0.42 0.83 16 36 H 0.37 7.77 5.76 -40.82 -0.24 7.54 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.08 0.46 7.97 -51.93 -0.41 0.05 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.39 6.33 -51.92 -0.33 0.06 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.57 7.85 -51.93 -0.41 0.17 16 44 H 0.07 0.36 7.15 -51.93 -0.37 -0.01 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.09 1.10 6.39 -51.93 -0.33 0.76 16 51 H 0.09 1.42 8.04 -51.93 -0.42 1.00 16 52 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 LS Contribution 404.75 15.07 6.10 6.10 Total: -1.00 -35.23 404.75 -9.45 -44.68 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -9.01 Total: 11.92 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -1.55 Total: 4.09 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.44 Total: -57.24 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: 0.17 Total: -24.37 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.71 Total: 14.83 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.23 -9.45 -44.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672184073.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.305 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds