Wall clock time and date at job start Tue Mar 31 2020 20:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47185 * 2 1 4 4 N 1.46897 * 109.47369 * 239.99801 * 2 1 3 5 5 C 1.46897 * 111.00068 * 84.99831 * 4 2 1 6 6 C 1.50702 * 109.46939 * 180.02562 * 5 4 2 7 7 O 1.21292 * 120.00258 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00069 * 179.97438 * 6 5 4 9 9 C 1.37099 * 120.00267 * 179.97438 * 8 6 5 10 10 H 1.08006 * 119.99516 * 0.02562 * 9 8 6 11 11 C 1.38950 * 120.00334 * 180.02562 * 9 8 6 12 12 N 1.31411 * 119.99991 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99786 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.46845 * 90.00166 * 13 11 9 15 15 H 1.48500 * 109.47212 * 210.00249 * 13 11 9 16 16 H 1.48500 * 109.47205 * 330.00626 * 13 11 9 17 17 C 1.53002 * 109.46903 * 119.99383 * 2 1 3 18 18 H 1.08999 * 110.88303 * 54.55146 * 17 2 1 19 19 C 1.55152 * 111.00605 * 290.62795 * 17 2 1 20 20 C 1.54324 * 102.94407 * 206.42198 * 19 17 2 21 21 N 1.47030 * 107.26834 * 22.19335 * 20 19 17 22 22 C 1.34770 * 125.64596 * 181.09100 * 21 20 19 23 23 O 1.21287 * 120.00104 * 179.97438 * 22 21 20 24 24 C 1.50696 * 120.00409 * 359.96497 * 22 21 20 25 25 C 1.54275 * 110.03129 * 297.16176 * 24 22 21 26 26 C 1.54887 * 104.19650 * 217.10416 * 25 24 22 27 27 C 1.54888 * 102.74819 * 37.94288 * 26 25 24 28 28 C 1.53872 * 110.03743 * 179.97438 * 24 22 21 29 29 C 1.47424 * 108.70271 * 1.05911 * 21 20 19 30 30 H 1.08996 * 109.47043 * 304.62068 * 1 2 3 31 31 H 1.09000 * 109.46874 * 64.61642 * 1 2 3 32 32 H 1.08998 * 109.47032 * 184.61497 * 1 2 3 33 33 H 1.00905 * 110.99842 * 321.04609 * 4 2 1 34 34 H 1.08990 * 109.47069 * 299.99917 * 5 4 2 35 35 H 1.09003 * 109.47190 * 60.00670 * 5 4 2 36 36 H 0.97003 * 119.99869 * 0.02562 * 8 6 5 37 37 H 0.96998 * 119.99080 * 180.02562 * 12 11 9 38 38 H 1.09006 * 110.72338 * 324.78485 * 19 17 2 39 39 H 1.09001 * 110.72274 * 88.06021 * 19 17 2 40 40 H 1.08992 * 109.88619 * 262.77794 * 20 19 17 41 41 H 1.09007 * 110.01309 * 141.67691 * 20 19 17 42 42 H 1.08998 * 110.02083 * 58.60060 * 24 22 21 43 43 H 1.09005 * 110.48385 * 335.78178 * 25 24 22 44 44 H 1.09003 * 110.48810 * 98.42445 * 25 24 22 45 45 H 1.08993 * 110.75512 * 279.62369 * 26 25 24 46 46 H 1.09004 * 110.75256 * 156.25552 * 26 25 24 47 47 H 1.08995 * 110.48568 * 203.37445 * 27 26 25 48 48 H 1.09002 * 110.60123 * 80.78998 * 27 26 25 49 49 H 1.08997 * 110.03296 * 238.56588 * 28 24 22 50 50 H 1.09004 * 110.03062 * 359.97438 * 28 24 22 51 51 H 1.09000 * 110.36282 * 217.03304 * 29 21 20 52 52 H 1.09002 * 110.36858 * 94.71010 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5874 -0.5220 -3.5559 7 8 2.8670 -1.6992 -3.4703 8 7 2.7274 0.1199 -4.7327 9 6 3.1873 -0.5572 -5.8325 10 1 3.4370 -1.6052 -5.7560 11 6 3.3321 0.1047 -7.0456 12 7 3.7724 -0.5445 -8.0999 13 14 2.8995 1.9171 -7.1781 14 1 4.0996 2.7361 -6.8715 15 1 2.4354 2.2157 -8.5568 16 1 1.8196 2.2402 -6.2114 17 6 2.0400 -0.7211 1.2493 18 1 1.6126 -1.7212 1.3224 19 6 1.7442 0.1057 2.5284 20 6 2.8483 -0.3571 3.5022 21 7 3.9462 -0.9021 2.6901 22 6 5.0901 -1.4299 3.1688 23 8 5.9304 -1.8520 2.4027 24 6 5.3254 -1.4956 4.6558 25 6 5.3715 -0.0713 5.2469 26 6 6.4632 -0.1500 6.3428 27 6 7.5244 -1.0786 5.7020 28 6 6.6940 -2.1365 4.9452 29 6 3.5880 -0.7763 1.2656 30 1 -0.3633 0.5838 0.8457 31 1 -0.3633 0.4405 -0.9285 32 1 -0.3633 -1.0243 0.0827 33 1 1.4496 -1.4980 -1.4099 34 1 1.0872 0.6161 -2.5525 35 1 2.7590 1.0461 -2.1182 36 1 2.5035 1.0612 -4.8013 37 1 3.8737 -0.0823 -8.9466 38 1 1.8311 1.1733 2.3263 39 1 0.7568 -0.1340 2.9230 40 1 2.4584 -1.1298 4.1646 41 1 3.2063 0.4885 4.0896 42 1 4.5343 -2.0735 5.1336 43 1 5.6518 0.6510 4.4802 44 1 4.4087 0.1910 5.6857 45 1 6.0634 -0.5921 7.2553 46 1 6.8826 0.8363 6.5417 47 1 8.1329 -1.5514 6.4728 48 1 8.1542 -0.5205 5.0091 49 1 6.5670 -3.0246 5.5642 50 1 7.1879 -2.4005 4.0101 51 1 3.9426 -1.6427 0.7074 52 1 4.0046 0.1409 0.8492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672184073.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:53 Heat of formation + Delta-G solvation = -107.761739 kcal Electronic energy + Delta-G solvation = -29538.803463 eV Core-core repulsion = 25536.198445 eV Total energy + Delta-G solvation = -4002.605018 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.46986 -40.39076 -39.41368 -37.89505 -37.07146 -35.97065 -33.79668 -33.25200 -30.94833 -30.49084 -29.63655 -28.99547 -28.05840 -25.66071 -24.92839 -22.95760 -21.95156 -21.56029 -21.45474 -21.10300 -20.25069 -19.71825 -18.46480 -17.86188 -17.08852 -16.98164 -16.61995 -16.48823 -16.43941 -15.91429 -15.53310 -15.25755 -15.10468 -14.92160 -14.60102 -14.48831 -14.30262 -14.26297 -14.01777 -13.72498 -13.59775 -13.27871 -13.17944 -12.92336 -12.70672 -12.66550 -12.42977 -12.28218 -12.13146 -12.07055 -12.02303 -11.98458 -11.84698 -11.70852 -11.66292 -11.53361 -11.47700 -11.42475 -10.78074 -10.45071 -10.26677 -9.63760 -9.25111 -8.42952 -6.04186 1.27924 1.34711 1.43278 1.60305 1.94605 2.01089 2.21772 2.70933 3.13165 3.29247 3.46899 3.63268 3.66330 3.71445 3.80505 3.95401 4.13512 4.20944 4.32183 4.39451 4.39796 4.42597 4.44070 4.45863 4.51639 4.56009 4.58225 4.65163 4.65883 4.73100 4.83000 4.90648 4.96998 4.98079 5.04233 5.04779 5.07886 5.19323 5.21941 5.22938 5.26943 5.33747 5.42804 5.45871 5.48574 5.51827 5.90433 6.11199 6.42547 6.56449 6.58418 6.86571 7.15848 7.38080 7.95704 8.74984 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015656 B = 0.002175 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.040975 B =12871.487136 C =13825.799719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 H 0.093 0.907 4 N -0.688 5.688 5 C 0.066 3.934 6 C 0.446 3.554 7 O -0.617 6.617 8 N -0.591 5.591 9 C -0.330 4.330 10 H 0.052 0.948 11 C -0.018 4.018 12 N -0.935 5.935 13 Si 0.968 3.032 14 H -0.258 1.258 15 H -0.274 1.274 16 H -0.228 1.228 17 C -0.078 4.078 18 H 0.077 0.923 19 C -0.114 4.114 20 C 0.092 3.908 21 N -0.620 5.620 22 C 0.517 3.483 23 O -0.598 6.598 24 C -0.101 4.101 25 C -0.109 4.109 26 C -0.116 4.116 27 C -0.126 4.126 28 C -0.126 4.126 29 C 0.122 3.878 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.343 0.657 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.120 0.880 43 H 0.052 0.948 44 H 0.104 0.896 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.048 0.952 49 H 0.081 0.919 50 H 0.051 0.949 51 H 0.036 0.964 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.818 10.538 34.957 37.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.013 4.013 3 H 0.111 0.889 4 N -0.320 5.320 5 C -0.067 4.067 6 C 0.234 3.766 7 O -0.501 6.501 8 N -0.233 5.233 9 C -0.459 4.459 10 H 0.070 0.930 11 C -0.217 4.217 12 N -0.576 5.576 13 Si 0.788 3.212 14 H -0.183 1.183 15 H -0.199 1.199 16 H -0.151 1.151 17 C -0.098 4.098 18 H 0.096 0.904 19 C -0.152 4.152 20 C -0.030 4.030 21 N -0.352 5.352 22 C 0.307 3.693 23 O -0.480 6.480 24 C -0.122 4.122 25 C -0.146 4.146 26 C -0.154 4.154 27 C -0.163 4.163 28 C -0.164 4.164 29 C -0.001 4.001 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.162 0.838 34 H 0.098 0.902 35 H 0.129 0.871 36 H 0.226 0.774 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.130 0.870 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.138 0.862 43 H 0.071 0.929 44 H 0.122 0.878 45 H 0.108 0.892 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.067 0.933 49 H 0.100 0.900 50 H 0.070 0.930 51 H 0.055 0.945 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.413 9.569 34.595 36.462 hybrid contribution -0.384 0.111 -1.786 1.830 sum -6.797 9.680 32.809 34.876 Atomic orbital electron populations 1.22439 0.94960 1.02764 1.03242 1.21640 0.94037 0.97757 0.87909 0.88929 1.60144 1.59092 1.09375 1.03372 1.21622 1.01721 0.95282 0.88031 1.21128 0.82438 0.87987 0.85063 1.90554 1.55332 1.18926 1.85297 1.42030 1.60631 1.11854 1.08788 1.18998 1.42422 0.96025 0.88462 0.93015 1.26181 0.96407 1.05273 0.93801 1.69817 1.46313 1.39644 1.01826 0.85325 0.80223 0.76164 0.79537 1.18294 1.19863 1.15149 1.22251 0.92165 1.00304 0.95031 0.90435 1.22753 0.99280 1.00703 0.92507 1.22467 0.86344 0.99687 0.94458 1.48693 1.18101 1.60079 1.08351 1.21125 0.79814 0.75875 0.92442 1.90689 1.45695 1.50322 1.61264 1.21977 1.00587 1.00617 0.89055 1.22408 1.01554 0.92750 0.97929 1.22508 0.94929 1.00001 0.97943 1.22383 0.98013 0.96868 0.99085 1.22208 0.94188 0.99243 1.00754 1.21993 0.96429 1.00256 0.81443 0.89171 0.92803 0.92589 0.83759 0.90217 0.87150 0.77427 0.91133 0.88919 0.87044 0.89531 0.88948 0.86187 0.92895 0.87766 0.89243 0.90439 0.90198 0.93294 0.90010 0.93045 0.94521 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.00 71.98 0.65 -1.68 16 2 C 0.10 1.73 2.12 44.92 0.10 1.82 16 3 H 0.09 1.46 7.70 -2.39 -0.02 1.44 16 4 N -0.69 -19.84 5.49 -495.59 -2.72 -22.56 16 5 C 0.07 1.99 5.96 85.56 0.51 2.51 16 6 C 0.45 20.72 7.82 87.66 0.69 21.41 16 7 O -0.62 -35.64 15.78 -3.07 -0.05 -35.69 16 8 N -0.59 -28.61 5.09 -306.97 -1.56 -30.17 16 9 C -0.33 -19.91 10.16 84.04 0.85 -19.06 16 10 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 11 C -0.02 -1.04 5.50 84.93 0.47 -0.57 16 12 N -0.94 -57.74 13.96 21.66 0.30 -57.44 16 13 Si 0.97 39.44 27.74 68.60 1.90 41.35 16 14 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 15 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 16 H -0.23 -7.71 6.52 99.48 0.65 -7.06 16 17 C -0.08 -1.34 2.75 -9.40 -0.03 -1.36 16 18 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 19 C -0.11 -0.95 5.82 31.78 0.18 -0.76 16 20 C 0.09 0.94 6.04 86.73 0.52 1.46 16 21 N -0.62 -13.41 3.33 -811.78 -2.70 -16.11 16 22 C 0.52 13.69 7.05 87.66 0.62 14.31 16 23 O -0.60 -23.04 15.46 -3.05 -0.05 -23.08 16 24 C -0.10 -1.66 2.77 -10.81 -0.03 -1.69 16 25 C -0.11 -1.18 4.98 31.67 0.16 -1.03 16 26 C -0.12 -1.09 6.91 31.88 0.22 -0.87 16 27 C -0.13 -1.81 6.83 31.69 0.22 -1.60 16 28 C -0.13 -2.35 6.40 31.33 0.20 -2.15 16 29 C 0.12 3.18 6.01 86.86 0.52 3.70 16 30 H 0.09 0.71 7.76 -2.39 -0.02 0.69 16 31 H 0.05 0.79 7.36 -2.39 -0.02 0.77 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.34 10.82 8.18 -89.69 -0.73 10.08 16 34 H 0.08 1.91 7.37 -2.39 -0.02 1.90 16 35 H 0.11 2.87 8.06 -2.39 -0.02 2.86 16 36 H 0.39 15.48 5.76 -92.71 -0.53 14.94 16 37 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 38 H 0.09 0.58 7.97 -2.38 -0.02 0.56 16 39 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.09 0.58 6.33 -2.38 -0.02 0.57 16 42 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.05 0.78 7.85 -2.38 -0.02 0.76 16 44 H 0.10 0.50 7.15 -2.39 -0.02 0.49 16 45 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 47 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.05 1.39 6.39 -2.39 -0.02 1.37 16 51 H 0.04 1.31 8.04 -2.39 -0.02 1.29 16 52 H 0.06 1.54 8.04 -2.39 -0.02 1.52 16 Total: -1.00 -90.09 404.75 0.57 -89.52 By element: Atomic # 1 Polarization: 40.15 SS G_CDS: -0.41 Total: 39.75 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 5.85 Total: 14.44 kcal Atomic # 7 Polarization: -119.60 SS G_CDS: -6.68 Total: -126.28 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: -0.10 Total: -58.78 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 1.90 Total: 41.35 kcal Total: -90.09 0.57 -89.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672184073.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.237 kcal (2) G-P(sol) polarization free energy of solvation -90.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds