Wall clock time and date at job start Tue Mar 31 2020 20:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47420 * 2 1 4 4 N 1.46904 * 109.47012 * 240.00141 * 2 1 3 5 5 C 1.46893 * 111.00356 * 85.00090 * 4 2 1 6 6 C 1.50695 * 109.47484 * 179.97438 * 5 4 2 7 7 O 1.21297 * 119.99665 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00332 * 179.97438 * 6 5 4 9 9 C 1.37097 * 120.00534 * 180.02562 * 8 6 5 10 10 H 1.08004 * 119.99269 * 359.97438 * 9 8 6 11 11 C 1.38945 * 120.00559 * 180.02562 * 9 8 6 12 12 N 1.31412 * 119.99754 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00324 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47001 * 89.99674 * 13 11 9 15 15 H 1.48498 * 109.47034 * 209.99665 * 13 11 9 16 16 H 1.48497 * 109.46701 * 329.99905 * 13 11 9 17 17 C 1.52999 * 109.47088 * 120.00160 * 2 1 3 18 18 H 1.09010 * 110.88635 * 57.56956 * 17 2 1 19 19 C 1.55151 * 111.00733 * 181.45327 * 17 2 1 20 20 C 1.54315 * 102.94543 * 153.61360 * 19 17 2 21 21 N 1.47028 * 107.27281 * 337.80787 * 20 19 17 22 22 C 1.34772 * 125.65065 * 178.90321 * 21 20 19 23 23 O 1.21282 * 120.00091 * 180.02562 * 22 21 20 24 24 C 1.50700 * 120.00241 * 0.02708 * 22 21 20 25 25 C 1.54891 * 110.75653 * 66.66679 * 24 22 21 26 26 C 1.54267 * 104.19324 * 156.25978 * 25 24 22 27 27 C 1.53876 * 106.59870 * 336.39035 * 26 25 24 28 28 C 1.54261 * 106.59990 * 0.02562 * 27 26 25 29 29 C 1.47428 * 108.69784 * 359.16879 * 21 20 19 30 30 H 1.08996 * 109.47431 * 300.00261 * 1 2 3 31 31 H 1.09008 * 109.47063 * 60.00065 * 1 2 3 32 32 H 1.09000 * 109.47420 * 180.02562 * 1 2 3 33 33 H 1.00907 * 111.00007 * 321.04295 * 4 2 1 34 34 H 1.08997 * 109.47093 * 300.00271 * 5 4 2 35 35 H 1.09005 * 109.46735 * 59.99479 * 5 4 2 36 36 H 0.96999 * 119.99799 * 0.02562 * 8 6 5 37 37 H 0.96999 * 119.99946 * 179.97438 * 12 11 9 38 38 H 1.09003 * 110.71855 * 35.24530 * 19 17 2 39 39 H 1.09006 * 110.87367 * 272.04758 * 19 17 2 40 40 H 1.08999 * 109.88587 * 218.39268 * 20 19 17 41 41 H 1.09002 * 109.88673 * 97.22514 * 20 19 17 42 42 H 1.09001 * 110.66810 * 303.23361 * 24 22 21 43 43 H 1.09004 * 110.48613 * 37.58350 * 25 24 22 44 44 H 1.08994 * 110.48745 * 274.93768 * 25 24 22 45 45 H 1.08995 * 110.03032 * 217.10762 * 26 25 24 46 46 H 1.08998 * 110.03405 * 95.67701 * 26 25 24 47 47 H 1.08998 * 110.02768 * 119.28860 * 27 26 25 48 48 H 1.08994 * 110.03051 * 240.71540 * 27 26 25 49 49 H 1.09000 * 110.48928 * 142.28640 * 28 27 26 50 50 H 1.09001 * 110.48691 * 264.79667 * 28 27 26 51 51 H 1.09000 * 110.36442 * 142.74280 * 29 21 20 52 52 H 1.09000 * 110.36411 * 265.05852 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2225 -2.3469 6 6 2.5885 -0.5215 -3.5557 7 8 2.8688 -1.6986 -3.4699 8 7 2.7287 0.1205 -4.7324 9 6 3.1885 -0.5565 -5.8323 10 1 3.4389 -1.6043 -5.7556 11 6 3.3335 0.1055 -7.0452 12 7 3.0294 1.3806 -7.1383 13 14 3.9594 -0.8172 -8.5440 14 1 2.8101 -1.3992 -9.2826 15 1 4.6943 0.1201 -9.4310 16 1 4.8713 -1.9058 -8.1099 17 6 2.0400 -0.7213 1.2492 18 1 1.6546 -1.7400 1.2944 19 6 3.5905 -0.7103 1.3037 20 6 3.8840 -0.8161 2.8150 21 7 2.6858 -0.3470 3.5263 22 6 2.5337 -0.3031 4.8647 23 8 1.4967 0.1041 5.3441 24 6 3.6520 -0.7599 5.7657 25 6 4.8722 0.1870 5.6495 26 6 5.6271 -0.0037 6.9812 27 6 4.5957 -0.5157 8.0018 28 6 3.2501 -0.6190 7.2546 29 6 1.6760 0.0614 2.5328 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.4495 -1.4980 -1.4101 34 1 1.0872 0.6163 -2.5525 35 1 2.7589 1.0462 -2.1181 36 1 2.5042 1.0617 -4.8011 37 1 3.1310 1.8429 -7.9849 38 1 3.9841 0.2220 0.8987 39 1 4.0040 -1.5660 0.7698 40 1 4.7371 -0.1881 3.0718 41 1 4.0908 -1.8528 3.0809 42 1 3.9341 -1.7878 5.5377 43 1 4.5438 1.2209 5.5417 44 1 5.5020 -0.1037 4.8088 45 1 6.0419 0.9475 7.3147 46 1 6.4246 -0.7362 6.8567 47 1 4.8927 -1.4967 8.3726 48 1 4.5100 0.1869 8.8306 49 1 2.6963 -1.4976 7.5855 50 1 2.6585 0.2836 7.4077 51 1 0.6770 -0.2108 2.8734 52 1 1.7360 1.1343 2.3500 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672184074.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:57 Heat of formation + Delta-G solvation = -90.551453 kcal Electronic energy + Delta-G solvation = -29194.452930 eV Core-core repulsion = 25192.594206 eV Total energy + Delta-G solvation = -4001.858724 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.61656 -38.87249 -38.11941 -37.20015 -35.93486 -33.92591 -32.13799 -31.21847 -30.34799 -29.77137 -29.07596 -27.92890 -26.43561 -24.66470 -23.71173 -21.99629 -21.58808 -20.64014 -20.34490 -19.27171 -19.15479 -17.90395 -17.62372 -16.57878 -16.06381 -15.91085 -15.64544 -15.36526 -14.88114 -14.59082 -14.36164 -14.16485 -13.88248 -13.72346 -13.69455 -13.56735 -13.28258 -12.98298 -12.77622 -12.66687 -12.32185 -12.21967 -12.13111 -11.64181 -11.58946 -11.54900 -11.51704 -11.45407 -11.28879 -11.14281 -11.07373 -10.94156 -10.86279 -10.76638 -10.64211 -10.40700 -10.23031 -9.93235 -9.52257 -8.83450 -8.47759 -8.05728 -7.96923 -6.43086 -3.83955 2.42445 2.75499 3.16643 3.25455 3.31257 3.89564 3.97450 4.07477 4.14164 4.23089 4.34603 4.47483 4.55713 4.70482 4.90219 4.94163 4.99693 5.02490 5.10930 5.13635 5.16007 5.17856 5.20411 5.25115 5.25918 5.27915 5.38481 5.42205 5.49673 5.56294 5.65852 5.66354 5.69041 5.74516 5.79135 5.81308 5.86469 5.88963 5.98487 6.00787 6.06361 6.09213 6.15926 6.24985 6.29286 7.21221 7.31889 7.53826 7.65036 7.96609 8.05030 8.59846 9.16607 9.53125 10.04458 10.74607 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024902 B = 0.001791 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.139155 B =15630.378922 C =16272.182778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.095 3.905 3 H 0.079 0.921 4 N -0.661 5.661 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.584 6.584 8 N -0.564 5.564 9 C -0.299 4.299 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.270 1.270 17 C -0.086 4.086 18 H 0.084 0.916 19 C -0.112 4.112 20 C 0.094 3.906 21 N -0.616 5.616 22 C 0.535 3.465 23 O -0.544 6.544 24 C -0.111 4.111 25 C -0.114 4.114 26 C -0.123 4.123 27 C -0.126 4.126 28 C -0.105 4.105 29 C 0.111 3.889 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.350 0.650 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.068 0.932 50 H 0.079 0.921 51 H 0.076 0.924 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.581 -0.227 25.663 25.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.016 4.016 3 H 0.098 0.902 4 N -0.292 5.292 5 C -0.081 4.081 6 C 0.226 3.774 7 O -0.468 6.468 8 N -0.201 5.201 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C -0.106 4.106 18 H 0.102 0.898 19 C -0.150 4.150 20 C -0.029 4.029 21 N -0.350 5.350 22 C 0.324 3.676 23 O -0.422 6.422 24 C -0.133 4.133 25 C -0.152 4.152 26 C -0.161 4.161 27 C -0.163 4.163 28 C -0.143 4.143 29 C -0.012 4.012 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.170 0.830 34 H 0.061 0.939 35 H 0.103 0.897 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.118 0.882 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.098 0.902 51 H 0.095 0.905 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.904 -0.591 26.046 26.122 hybrid contribution -0.775 0.320 -1.223 1.482 sum 1.129 -0.271 24.823 24.851 Atomic orbital electron populations 1.22576 0.97294 1.02408 1.02307 1.21475 0.92361 0.97724 0.90056 0.90241 1.60121 1.57628 1.09096 1.02383 1.21686 0.99876 0.95685 0.90878 1.19819 0.85134 0.88235 0.84182 1.90523 1.55350 1.16272 1.84643 1.41869 1.57775 1.12470 1.07956 1.19699 1.39983 0.96443 0.86775 0.87931 1.25261 0.97670 0.95769 0.99257 1.69611 1.48689 1.08848 1.27157 0.85858 0.78871 0.78966 0.80598 1.20440 1.20928 1.19411 1.22253 0.96074 0.99796 0.92440 0.89772 1.22523 0.95459 1.04340 0.92633 1.22284 0.87757 0.99477 0.93384 1.48525 1.17213 1.64347 1.04923 1.20226 0.88657 0.77793 0.80934 1.90692 1.29647 1.47394 1.74432 1.22274 0.94324 1.01146 0.95513 1.22382 0.95154 0.99294 0.98353 1.22125 0.98021 1.01435 0.94527 1.22158 0.94697 1.01300 0.98185 1.22227 0.97077 1.03272 0.91744 1.22226 0.92567 0.98935 0.87473 0.92084 0.92321 0.92231 0.82995 0.93883 0.89710 0.77485 0.91880 0.90436 0.88952 0.91190 0.91452 0.88152 0.91173 0.90662 0.91529 0.91485 0.91694 0.91577 0.91304 0.90242 0.90534 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.89 9.01 37.16 0.33 -1.56 16 2 C 0.09 1.04 2.11 -67.71 -0.14 0.90 16 3 H 0.08 0.86 7.76 -51.93 -0.40 0.46 16 4 N -0.66 -9.64 5.57 -108.00 -0.60 -10.25 16 5 C 0.05 0.85 5.96 -4.98 -0.03 0.82 16 6 C 0.44 10.08 7.82 -10.99 -0.09 9.99 16 7 O -0.58 -15.40 15.78 5.54 0.09 -15.32 16 8 N -0.56 -14.03 5.29 -10.97 -0.06 -14.09 16 9 C -0.30 -8.25 9.68 -14.94 -0.14 -8.40 16 10 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 13 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 C -0.09 -0.86 2.75 -88.59 -0.24 -1.10 16 18 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 19 C -0.11 -1.08 6.13 -24.90 -0.15 -1.23 16 20 C 0.09 0.77 6.11 -3.07 -0.02 0.75 16 21 N -0.62 -6.26 3.33 -170.66 -0.57 -6.83 16 22 C 0.53 6.07 7.19 -10.99 -0.08 6.00 16 23 O -0.54 -8.15 15.98 5.56 0.09 -8.06 16 24 C -0.11 -0.91 2.67 -89.79 -0.24 -1.15 16 25 C -0.11 -0.78 5.60 -25.07 -0.14 -0.92 16 26 C -0.12 -0.71 6.80 -25.61 -0.17 -0.89 16 27 C -0.13 -0.77 6.80 -25.61 -0.17 -0.94 16 28 C -0.11 -0.85 5.90 -25.09 -0.15 -1.00 16 29 C 0.11 1.13 5.56 -2.65 -0.01 1.12 16 30 H 0.06 0.55 7.46 -51.93 -0.39 0.16 16 31 H 0.06 0.63 7.45 -51.92 -0.39 0.24 16 32 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 33 H 0.35 5.44 8.17 -39.29 -0.32 5.12 16 34 H 0.04 0.66 7.44 -51.93 -0.39 0.27 16 35 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 36 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.08 0.78 8.04 -51.93 -0.42 0.37 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.50 6.25 -51.93 -0.32 0.17 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.55 8.04 -51.93 -0.42 0.13 16 44 H 0.07 0.44 6.46 -51.93 -0.34 0.10 16 45 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.08 0.78 7.44 -51.93 -0.39 0.39 16 51 H 0.08 0.84 7.97 -51.93 -0.41 0.43 16 52 H 0.07 0.68 8.00 -51.93 -0.42 0.26 16 LS Contribution 408.77 15.07 6.16 6.16 Total: -1.00 -32.08 408.77 -9.81 -41.90 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -9.07 Total: 11.34 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.55 Total: 2.89 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.50 Total: -54.74 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.18 Total: -23.38 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.08 -9.81 -41.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672184074.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.655 kcal (2) G-P(sol) polarization free energy of solvation -32.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds