Wall clock time and date at job start Tue Mar 31 2020 20:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47420 * 2 1 4 4 N 1.46904 * 109.47012 * 240.00141 * 2 1 3 5 5 C 1.46893 * 111.00356 * 85.00090 * 4 2 1 6 6 C 1.50695 * 109.47484 * 179.97438 * 5 4 2 7 7 O 1.21297 * 119.99665 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00332 * 179.97438 * 6 5 4 9 9 C 1.37097 * 120.00534 * 180.02562 * 8 6 5 10 10 H 1.08004 * 119.99269 * 359.97438 * 9 8 6 11 11 C 1.38945 * 120.00559 * 180.02562 * 9 8 6 12 12 N 1.31412 * 119.99754 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00324 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47001 * 89.99674 * 13 11 9 15 15 H 1.48498 * 109.47034 * 209.99665 * 13 11 9 16 16 H 1.48497 * 109.46701 * 329.99905 * 13 11 9 17 17 C 1.52999 * 109.47088 * 120.00160 * 2 1 3 18 18 H 1.09010 * 110.88635 * 57.56956 * 17 2 1 19 19 C 1.55151 * 111.00733 * 181.45327 * 17 2 1 20 20 C 1.54315 * 102.94543 * 153.61360 * 19 17 2 21 21 N 1.47028 * 107.27281 * 337.80787 * 20 19 17 22 22 C 1.34772 * 125.65065 * 178.90321 * 21 20 19 23 23 O 1.21282 * 120.00091 * 180.02562 * 22 21 20 24 24 C 1.50700 * 120.00241 * 0.02708 * 22 21 20 25 25 C 1.54891 * 110.75653 * 66.66679 * 24 22 21 26 26 C 1.54267 * 104.19324 * 156.25978 * 25 24 22 27 27 C 1.53876 * 106.59870 * 336.39035 * 26 25 24 28 28 C 1.54261 * 106.59990 * 0.02562 * 27 26 25 29 29 C 1.47428 * 108.69784 * 359.16879 * 21 20 19 30 30 H 1.08996 * 109.47431 * 300.00261 * 1 2 3 31 31 H 1.09008 * 109.47063 * 60.00065 * 1 2 3 32 32 H 1.09000 * 109.47420 * 180.02562 * 1 2 3 33 33 H 1.00907 * 111.00007 * 321.04295 * 4 2 1 34 34 H 1.08997 * 109.47093 * 300.00271 * 5 4 2 35 35 H 1.09005 * 109.46735 * 59.99479 * 5 4 2 36 36 H 0.96999 * 119.99799 * 0.02562 * 8 6 5 37 37 H 0.96999 * 119.99946 * 179.97438 * 12 11 9 38 38 H 1.09003 * 110.71855 * 35.24530 * 19 17 2 39 39 H 1.09006 * 110.87367 * 272.04758 * 19 17 2 40 40 H 1.08999 * 109.88587 * 218.39268 * 20 19 17 41 41 H 1.09002 * 109.88673 * 97.22514 * 20 19 17 42 42 H 1.09001 * 110.66810 * 303.23361 * 24 22 21 43 43 H 1.09004 * 110.48613 * 37.58350 * 25 24 22 44 44 H 1.08994 * 110.48745 * 274.93768 * 25 24 22 45 45 H 1.08995 * 110.03032 * 217.10762 * 26 25 24 46 46 H 1.08998 * 110.03405 * 95.67701 * 26 25 24 47 47 H 1.08998 * 110.02768 * 119.28860 * 27 26 25 48 48 H 1.08994 * 110.03051 * 240.71540 * 27 26 25 49 49 H 1.09000 * 110.48928 * 142.28640 * 28 27 26 50 50 H 1.09001 * 110.48691 * 264.79667 * 28 27 26 51 51 H 1.09000 * 110.36442 * 142.74280 * 29 21 20 52 52 H 1.09000 * 110.36411 * 265.05852 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2225 -2.3469 6 6 2.5885 -0.5215 -3.5557 7 8 2.8688 -1.6986 -3.4699 8 7 2.7287 0.1205 -4.7324 9 6 3.1885 -0.5565 -5.8323 10 1 3.4389 -1.6043 -5.7556 11 6 3.3335 0.1055 -7.0452 12 7 3.0294 1.3806 -7.1383 13 14 3.9594 -0.8172 -8.5440 14 1 2.8101 -1.3992 -9.2826 15 1 4.6943 0.1201 -9.4310 16 1 4.8713 -1.9058 -8.1099 17 6 2.0400 -0.7213 1.2492 18 1 1.6546 -1.7400 1.2944 19 6 3.5905 -0.7103 1.3037 20 6 3.8840 -0.8161 2.8150 21 7 2.6858 -0.3470 3.5263 22 6 2.5337 -0.3031 4.8647 23 8 1.4967 0.1041 5.3441 24 6 3.6520 -0.7599 5.7657 25 6 4.8722 0.1870 5.6495 26 6 5.6271 -0.0037 6.9812 27 6 4.5957 -0.5157 8.0018 28 6 3.2501 -0.6190 7.2546 29 6 1.6760 0.0614 2.5328 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.4495 -1.4980 -1.4101 34 1 1.0872 0.6163 -2.5525 35 1 2.7589 1.0462 -2.1181 36 1 2.5042 1.0617 -4.8011 37 1 3.1310 1.8429 -7.9849 38 1 3.9841 0.2220 0.8987 39 1 4.0040 -1.5660 0.7698 40 1 4.7371 -0.1881 3.0718 41 1 4.0908 -1.8528 3.0809 42 1 3.9341 -1.7878 5.5377 43 1 4.5438 1.2209 5.5417 44 1 5.5020 -0.1037 4.8088 45 1 6.0419 0.9475 7.3147 46 1 6.4246 -0.7362 6.8567 47 1 4.8927 -1.4967 8.3726 48 1 4.5100 0.1869 8.8306 49 1 2.6963 -1.4976 7.5855 50 1 2.6585 0.2836 7.4077 51 1 0.6770 -0.2108 2.8734 52 1 1.7360 1.1343 2.3500 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672184074.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:56 Heat of formation + Delta-G solvation = -111.713762 kcal Electronic energy + Delta-G solvation = -29195.370596 eV Core-core repulsion = 25192.594206 eV Total energy + Delta-G solvation = -4002.776390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.43327 -40.22354 -39.36911 -37.96563 -37.03956 -35.88088 -33.36512 -33.01891 -31.27025 -30.45100 -29.63460 -28.76195 -27.91190 -26.06255 -24.88960 -22.88512 -22.26637 -21.39766 -21.14571 -20.83265 -19.99147 -19.86576 -18.39229 -17.86224 -17.10078 -16.85868 -16.61731 -16.45661 -16.34142 -16.07985 -15.63957 -15.26070 -14.94968 -14.75765 -14.54670 -14.52438 -14.29299 -13.97168 -13.66302 -13.63759 -13.55242 -13.46213 -13.20721 -12.97424 -12.95580 -12.74200 -12.40209 -12.17861 -12.14418 -12.11255 -12.06517 -12.05194 -11.84413 -11.73909 -11.65062 -11.49059 -11.46081 -11.25524 -10.81782 -10.31166 -9.99418 -9.66374 -9.25549 -8.45141 -5.93600 1.39014 1.42896 1.55424 1.57234 1.96293 2.08321 2.30291 2.89671 3.22529 3.35587 3.50872 3.57568 3.67724 3.75668 3.80039 3.97877 4.19426 4.25279 4.28765 4.33948 4.39755 4.41092 4.46333 4.48585 4.49682 4.56547 4.58465 4.60277 4.63877 4.68950 4.79431 4.83561 4.86903 4.92402 5.03964 5.05022 5.09986 5.18233 5.19934 5.25022 5.28727 5.33243 5.38878 5.42670 5.45957 5.48936 5.93246 6.14896 6.44121 6.50999 6.62174 7.11188 7.14699 7.59062 8.14234 8.72173 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024902 B = 0.001791 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.139155 B =15630.378922 C =16272.182778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.099 3.901 3 H 0.087 0.913 4 N -0.668 5.668 5 C 0.067 3.933 6 C 0.439 3.561 7 O -0.622 6.622 8 N -0.575 5.575 9 C -0.332 4.332 10 H 0.079 0.921 11 C -0.014 4.014 12 N -0.921 5.921 13 Si 0.992 3.008 14 H -0.272 1.272 15 H -0.272 1.272 16 H -0.273 1.273 17 C -0.078 4.078 18 H 0.080 0.920 19 C -0.109 4.109 20 C 0.097 3.903 21 N -0.616 5.616 22 C 0.528 3.472 23 O -0.589 6.589 24 C -0.108 4.108 25 C -0.111 4.111 26 C -0.121 4.121 27 C -0.122 4.122 28 C -0.108 4.108 29 C 0.113 3.887 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.344 0.656 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.396 0.604 37 H 0.277 0.723 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.056 0.944 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.055 0.945 51 H 0.066 0.934 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.709 -0.131 26.209 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.011 4.011 3 H 0.106 0.894 4 N -0.300 5.300 5 C -0.066 4.066 6 C 0.227 3.773 7 O -0.508 6.508 8 N -0.212 5.212 9 C -0.462 4.462 10 H 0.097 0.903 11 C -0.213 4.213 12 N -0.562 5.562 13 Si 0.816 3.184 14 H -0.197 1.197 15 H -0.196 1.196 16 H -0.197 1.197 17 C -0.097 4.097 18 H 0.098 0.902 19 C -0.147 4.147 20 C -0.025 4.025 21 N -0.349 5.349 22 C 0.319 3.681 23 O -0.470 6.470 24 C -0.129 4.129 25 C -0.149 4.149 26 C -0.158 4.158 27 C -0.159 4.159 28 C -0.146 4.146 29 C -0.010 4.010 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.163 0.837 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.230 0.770 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.136 0.864 43 H 0.075 0.925 44 H 0.108 0.892 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.074 0.926 51 H 0.084 0.916 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.042 -0.475 26.595 26.773 hybrid contribution -1.165 0.283 -1.346 1.802 sum 1.877 -0.192 25.249 25.319 Atomic orbital electron populations 1.22521 0.96433 1.02495 1.02698 1.21506 0.93019 0.97806 0.88754 0.89442 1.60116 1.58317 1.08924 1.02595 1.21535 1.00908 0.95391 0.88725 1.20898 0.83289 0.88005 0.85116 1.90493 1.56582 1.18280 1.85464 1.41944 1.58419 1.12620 1.08241 1.19661 1.42039 0.95962 0.88547 0.90286 1.26022 0.97321 0.96604 1.01380 1.69672 1.48763 1.09674 1.28065 0.84940 0.78402 0.77835 0.77244 1.19742 1.19640 1.19746 1.22129 0.96456 0.99346 0.91813 0.90209 1.22473 0.94884 1.03784 0.93604 1.22372 0.87368 1.00729 0.92049 1.48617 1.17736 1.63726 1.04794 1.20825 0.88816 0.77083 0.81383 1.90667 1.31560 1.49538 1.75221 1.22333 0.93668 1.02265 0.94616 1.22382 0.94684 0.98108 0.99682 1.22134 0.98017 1.02116 0.93572 1.22147 0.93491 1.02147 0.98151 1.22219 0.98012 1.02041 0.92320 1.22169 0.92297 0.99085 0.87479 0.90878 0.92686 0.92356 0.83721 0.91904 0.87809 0.77036 0.91375 0.90641 0.89897 0.89440 0.89984 0.86381 0.92541 0.89173 0.91113 0.90050 0.90462 0.91367 0.91460 0.92629 0.91553 0.91148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.43 9.01 71.98 0.65 -2.79 16 2 C 0.10 2.03 2.11 44.91 0.09 2.13 16 3 H 0.09 1.70 7.76 -2.39 -0.02 1.68 16 4 N -0.67 -18.80 5.57 -495.59 -2.76 -21.56 16 5 C 0.07 2.13 5.96 85.56 0.51 2.64 16 6 C 0.44 20.15 7.82 87.66 0.69 20.83 16 7 O -0.62 -33.35 15.78 -3.08 -0.05 -33.40 16 8 N -0.57 -28.88 5.29 -306.99 -1.62 -30.50 16 9 C -0.33 -18.63 9.68 84.04 0.81 -17.82 16 10 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 11 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 12 N -0.92 -49.20 13.05 21.66 0.28 -48.91 16 13 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 14 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 15 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 17 C -0.08 -1.46 2.75 -9.48 -0.03 -1.48 16 18 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 19 C -0.11 -1.94 6.13 31.78 0.19 -1.74 16 20 C 0.10 1.38 6.11 86.72 0.53 1.91 16 21 N -0.62 -11.79 3.33 -812.23 -2.70 -14.50 16 22 C 0.53 11.73 7.19 87.66 0.63 12.36 16 23 O -0.59 -18.03 15.98 -3.04 -0.05 -18.08 16 24 C -0.11 -1.62 2.67 -10.26 -0.03 -1.65 16 25 C -0.11 -1.29 5.60 31.67 0.18 -1.11 16 26 C -0.12 -1.11 6.80 31.32 0.21 -0.90 16 27 C -0.12 -1.28 6.80 31.32 0.21 -1.07 16 28 C -0.11 -1.69 5.90 31.66 0.19 -1.51 16 29 C 0.11 2.20 5.56 86.78 0.48 2.68 16 30 H 0.07 1.21 7.46 -2.39 -0.02 1.19 16 31 H 0.05 1.08 7.45 -2.38 -0.02 1.06 16 32 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 33 H 0.34 10.52 8.17 -89.69 -0.73 9.78 16 34 H 0.06 1.79 7.44 -2.39 -0.02 1.78 16 35 H 0.10 2.97 8.06 -2.38 -0.02 2.95 16 36 H 0.40 18.91 7.90 -92.71 -0.73 18.17 16 37 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 38 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 39 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.09 0.99 6.25 -2.39 -0.01 0.97 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 0.82 8.04 -2.38 -0.02 0.80 16 44 H 0.09 0.77 6.46 -2.39 -0.02 0.76 16 45 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.05 1.13 7.44 -2.39 -0.02 1.12 16 51 H 0.07 1.44 7.97 -2.39 -0.02 1.42 16 52 H 0.07 1.34 8.00 -2.39 -0.02 1.32 16 Total: -1.00 -70.28 408.77 0.37 -69.91 By element: Atomic # 1 Polarization: 40.81 SS G_CDS: -0.55 Total: 40.27 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 5.79 Total: 12.24 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -6.80 Total: -115.47 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -0.10 Total: -51.47 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -70.28 0.37 -69.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672184074.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.805 kcal (2) G-P(sol) polarization free energy of solvation -70.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds