Wall clock time and date at job start Tue Mar 31 2020 20:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.47071 * 2 1 4 4 N 1.46903 * 109.46799 * 119.99757 * 2 1 3 5 5 C 1.46894 * 111.00071 * 275.00112 * 4 2 1 6 6 C 1.50699 * 109.47099 * 180.02562 * 5 4 2 7 7 O 1.21295 * 119.99753 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00257 * 180.02562 * 6 5 4 9 9 C 1.37094 * 120.00111 * 179.97438 * 8 6 5 10 10 H 1.07995 * 120.00361 * 359.97438 * 9 8 6 11 11 C 1.38948 * 119.99734 * 179.97438 * 9 8 6 12 12 N 1.31417 * 119.99877 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00501 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47080 * 90.00120 * 13 11 9 15 15 H 1.48495 * 109.47594 * 210.00325 * 13 11 9 16 16 H 1.48500 * 109.46993 * 330.00375 * 13 11 9 17 17 C 1.52996 * 109.47068 * 240.00133 * 2 1 3 18 18 H 1.09000 * 110.88907 * 299.26586 * 17 2 1 19 19 C 1.55154 * 111.00621 * 63.15360 * 17 2 1 20 20 C 1.54323 * 102.94423 * 153.57478 * 19 17 2 21 21 N 1.47023 * 107.27004 * 337.80605 * 20 19 17 22 22 C 1.34781 * 125.64878 * 178.90544 * 21 20 19 23 23 O 1.21281 * 119.99619 * 180.02562 * 22 21 20 24 24 C 1.50695 * 119.99928 * 0.02562 * 22 21 20 25 25 C 1.54891 * 110.48751 * 294.77870 * 24 22 21 26 26 C 1.54892 * 102.74610 * 203.37700 * 25 24 22 27 27 C 1.54273 * 104.19671 * 37.94613 * 26 25 24 28 28 C 1.53880 * 106.59612 * 336.38671 * 27 26 25 29 29 C 1.47427 * 108.70235 * 359.17043 * 21 20 19 30 30 H 1.08997 * 109.47164 * 294.92492 * 1 2 3 31 31 H 1.09004 * 109.46970 * 54.92373 * 1 2 3 32 32 H 1.08999 * 109.46993 * 174.92245 * 1 2 3 33 33 H 1.00894 * 110.99885 * 38.95994 * 4 2 1 34 34 H 1.09001 * 109.47276 * 300.00491 * 5 4 2 35 35 H 1.08996 * 109.47326 * 59.99975 * 5 4 2 36 36 H 0.97000 * 119.99891 * 359.97438 * 8 6 5 37 37 H 0.96995 * 120.00108 * 179.97438 * 12 11 9 38 38 H 1.09000 * 110.72229 * 35.20958 * 19 17 2 39 39 H 1.08996 * 110.71697 * 271.93686 * 19 17 2 40 40 H 1.08995 * 109.88423 * 218.39129 * 20 19 17 41 41 H 1.09001 * 109.88341 * 97.21907 * 20 19 17 42 42 H 1.08997 * 110.43197 * 57.46252 * 24 22 21 43 43 H 1.08996 * 110.75680 * 85.06522 * 25 24 22 44 44 H 1.09001 * 110.75629 * 321.69328 * 25 24 22 45 45 H 1.08991 * 110.48878 * 279.26476 * 26 25 24 46 46 H 1.09003 * 110.48763 * 156.61758 * 26 25 24 47 47 H 1.08990 * 110.03343 * 95.67216 * 27 26 25 48 48 H 1.09004 * 110.02968 * 217.10566 * 27 26 25 49 49 H 1.08993 * 110.03215 * 119.28686 * 28 27 26 50 50 H 1.09001 * 110.03046 * 240.67365 * 28 27 26 51 51 H 1.08995 * 110.36674 * 142.74152 * 29 21 20 52 52 H 1.09008 * 110.36460 * 265.05824 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5884 -0.5215 3.5558 7 8 2.8687 -1.6985 3.4700 8 7 2.7285 0.1206 4.7325 9 6 3.1883 -0.5565 5.8323 10 1 3.4379 -1.6044 5.7560 11 6 3.3332 0.1057 7.0452 12 7 3.7744 -0.5432 8.0994 13 14 2.9023 1.9184 7.1772 14 1 1.4729 2.0613 7.5536 15 1 3.7532 2.5554 8.2142 16 1 3.1380 2.5798 5.8687 17 6 2.0400 -0.7212 -1.2492 18 1 1.7002 -1.7567 -1.2661 19 6 1.6087 0.0268 -2.5383 20 6 2.7003 -0.3747 -3.5526 21 7 3.8813 -0.7898 -2.7814 22 6 5.0429 -1.2334 -3.3014 23 8 5.9542 -1.5504 -2.5667 24 6 5.2091 -1.3356 -4.7957 25 6 4.2458 -2.4002 -5.3768 26 6 4.9387 -2.8005 -6.7030 27 6 6.4428 -2.7964 -6.3603 28 6 6.6148 -1.8650 -5.1475 29 6 3.5822 -0.6464 -1.3449 30 1 -0.3633 0.4331 0.9319 31 1 -0.3633 0.5906 -0.8411 32 1 -0.3633 -1.0236 -0.0910 33 1 1.4496 -1.4979 1.4100 34 1 2.7587 1.0463 2.1182 35 1 1.0871 0.6163 2.5525 36 1 2.5040 1.0617 4.8011 37 1 3.8760 -0.0810 8.9461 38 1 1.6096 1.1048 -2.3773 39 1 0.6285 -0.3135 -2.8719 40 1 2.9509 0.4775 -4.1842 41 1 2.3487 -1.2035 -4.1670 42 1 5.0379 -0.3667 -5.2647 43 1 3.2636 -1.9685 -5.5692 44 1 4.1680 -3.2571 -4.7077 45 1 4.7230 -2.0693 -7.4820 46 1 4.6211 -3.7957 -7.0142 47 1 6.7706 -3.8044 -6.1064 48 1 7.0174 -2.4184 -7.2059 49 1 7.0260 -2.4210 -4.3051 50 1 7.2735 -1.0354 -5.4044 51 1 4.0377 -1.4593 -0.7796 52 1 3.9364 0.3170 -0.9780 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672184075.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:59 Heat of formation + Delta-G solvation = -108.148607 kcal Electronic energy + Delta-G solvation = -29469.411418 eV Core-core repulsion = 25466.789625 eV Total energy + Delta-G solvation = -4002.621794 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.44214 -40.38672 -39.40970 -37.95570 -37.07199 -35.96919 -33.79520 -33.25910 -30.92730 -30.49887 -29.64990 -29.03816 -28.05918 -25.67384 -24.90487 -22.99917 -22.11084 -21.47979 -21.30421 -21.08094 -20.24272 -19.83136 -18.39235 -17.86692 -17.11822 -16.98935 -16.70795 -16.48307 -16.32067 -16.01668 -15.63713 -15.29782 -15.04924 -14.65594 -14.55093 -14.53153 -14.34544 -14.19786 -14.03312 -13.93695 -13.54984 -13.26797 -13.18316 -12.93866 -12.84909 -12.69031 -12.43517 -12.25398 -12.16994 -12.08538 -12.00309 -11.91489 -11.85286 -11.80820 -11.70344 -11.52745 -11.43467 -11.31176 -10.80213 -10.44840 -10.26623 -9.63620 -9.24935 -8.42847 -6.04077 1.28639 1.34225 1.43511 1.58958 1.94701 2.00460 2.21824 2.71032 3.13420 3.29512 3.46325 3.58286 3.66492 3.74009 3.78568 3.96153 4.13551 4.19670 4.30448 4.38915 4.40288 4.43026 4.44289 4.45664 4.49089 4.57164 4.58640 4.58784 4.64108 4.72376 4.81531 4.91353 4.93595 4.98258 5.04280 5.05812 5.08724 5.18873 5.20473 5.26487 5.27534 5.33310 5.40642 5.47391 5.48192 5.51987 5.90581 6.11420 6.43182 6.55595 6.58497 6.86634 7.14946 7.38177 7.95673 8.75051 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017854 B = 0.002100 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.869062 B =13332.719400 C =14266.700311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 H 0.091 0.909 4 N -0.688 5.688 5 C 0.066 3.934 6 C 0.446 3.554 7 O -0.617 6.617 8 N -0.591 5.591 9 C -0.330 4.330 10 H 0.052 0.948 11 C -0.018 4.018 12 N -0.935 5.935 13 Si 0.968 3.032 14 H -0.254 1.254 15 H -0.275 1.275 16 H -0.232 1.232 17 C -0.077 4.077 18 H 0.076 0.924 19 C -0.114 4.114 20 C 0.091 3.909 21 N -0.619 5.619 22 C 0.519 3.481 23 O -0.599 6.599 24 C -0.101 4.101 25 C -0.111 4.111 26 C -0.116 4.116 27 C -0.124 4.124 28 C -0.119 4.119 29 C 0.119 3.881 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.344 0.656 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.125 0.875 43 H 0.101 0.899 44 H 0.050 0.950 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.056 0.944 48 H 0.080 0.920 49 H 0.046 0.954 50 H 0.071 0.929 51 H 0.036 0.964 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.283 8.437 -35.154 37.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.013 4.013 3 H 0.109 0.891 4 N -0.320 5.320 5 C -0.067 4.067 6 C 0.234 3.766 7 O -0.501 6.501 8 N -0.233 5.233 9 C -0.459 4.459 10 H 0.070 0.930 11 C -0.216 4.216 12 N -0.576 5.576 13 Si 0.788 3.212 14 H -0.178 1.178 15 H -0.201 1.201 16 H -0.155 1.155 17 C -0.097 4.097 18 H 0.094 0.906 19 C -0.152 4.152 20 C -0.030 4.030 21 N -0.352 5.352 22 C 0.309 3.691 23 O -0.480 6.480 24 C -0.122 4.122 25 C -0.148 4.148 26 C -0.154 4.154 27 C -0.161 4.161 28 C -0.157 4.157 29 C -0.004 4.004 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.163 0.837 34 H 0.127 0.873 35 H 0.099 0.901 36 H 0.226 0.774 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.129 0.871 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.143 0.857 43 H 0.120 0.880 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.094 0.906 47 H 0.075 0.925 48 H 0.098 0.902 49 H 0.065 0.935 50 H 0.089 0.911 51 H 0.055 0.945 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.824 7.532 -34.816 36.471 hybrid contribution -0.244 0.291 1.761 1.801 sum -8.068 7.823 -33.055 34.914 Atomic orbital electron populations 1.22443 0.94866 1.02861 1.03240 1.21627 0.94104 0.97696 0.87905 0.89082 1.60127 1.59144 1.09387 1.03352 1.21618 1.01735 0.95262 0.88053 1.21120 0.82467 0.87987 0.85032 1.90552 1.55353 1.18927 1.85267 1.42030 1.60650 1.11810 1.08803 1.18997 1.42588 0.95980 0.88345 0.92983 1.26178 0.96387 1.05262 0.93819 1.69815 1.46260 1.39702 1.01813 0.85324 0.79536 0.76182 0.80206 1.17785 1.20057 1.15499 1.22192 0.92040 1.00518 0.94971 0.90581 1.22755 0.98975 1.01596 0.91922 1.22491 0.84227 1.01247 0.95081 1.48699 1.14222 1.64132 1.08122 1.21083 0.80443 0.75432 0.92130 1.90697 1.42003 1.51770 1.63573 1.22186 0.98340 1.02932 0.88758 1.22555 0.98761 0.96619 0.96909 1.22361 0.93654 1.02712 0.96650 1.22158 0.97904 0.98983 0.97087 1.22105 0.95320 0.99818 0.98478 1.21996 0.96966 1.00263 0.81166 0.92812 0.89136 0.92467 0.83701 0.87307 0.90114 0.77433 0.91134 0.88849 0.87085 0.89030 0.89304 0.85669 0.88020 0.93142 0.89221 0.90595 0.92535 0.90155 0.93466 0.91057 0.94527 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 8.91 71.98 0.64 -1.65 16 2 C 0.10 1.73 2.10 44.92 0.09 1.83 16 3 H 0.09 1.46 7.79 -2.39 -0.02 1.44 16 4 N -0.69 -19.82 5.65 -495.58 -2.80 -22.62 16 5 C 0.07 1.99 5.96 85.56 0.51 2.50 16 6 C 0.45 20.70 7.82 87.66 0.69 21.39 16 7 O -0.62 -35.55 15.78 -3.08 -0.05 -35.59 16 8 N -0.59 -28.59 5.09 -306.99 -1.56 -30.15 16 9 C -0.33 -19.89 10.16 84.04 0.85 -19.03 16 10 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 11 C -0.02 -1.03 5.50 84.93 0.47 -0.56 16 12 N -0.94 -57.66 13.96 21.66 0.30 -57.36 16 13 Si 0.97 39.44 27.74 68.60 1.90 41.34 16 14 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 15 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 16 H -0.23 -7.96 6.52 99.48 0.65 -7.32 16 17 C -0.08 -1.33 2.76 -9.48 -0.03 -1.36 16 18 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 19 C -0.11 -0.94 5.53 31.78 0.18 -0.76 16 20 C 0.09 0.90 6.14 86.73 0.53 1.44 16 21 N -0.62 -13.18 3.33 -812.23 -2.70 -15.89 16 22 C 0.52 13.56 7.19 87.65 0.63 14.19 16 23 O -0.60 -22.82 15.68 -3.03 -0.05 -22.87 16 24 C -0.10 -1.64 2.67 -10.46 -0.03 -1.67 16 25 C -0.11 -1.28 5.56 31.89 0.18 -1.11 16 26 C -0.12 -1.03 6.83 31.67 0.22 -0.82 16 27 C -0.12 -1.58 6.80 31.32 0.21 -1.36 16 28 C -0.12 -2.21 6.18 31.32 0.19 -2.01 16 29 C 0.12 3.05 6.16 86.78 0.53 3.59 16 30 H 0.05 0.78 7.35 -2.39 -0.02 0.76 16 31 H 0.09 0.69 7.57 -2.39 -0.02 0.67 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.34 10.75 8.18 -89.70 -0.73 10.02 16 34 H 0.11 2.87 8.06 -2.39 -0.02 2.85 16 35 H 0.08 1.93 7.36 -2.39 -0.02 1.91 16 36 H 0.39 15.49 5.76 -92.71 -0.53 14.95 16 37 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.09 0.56 8.04 -2.39 -0.02 0.54 16 39 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.09 0.60 6.00 -2.39 -0.01 0.58 16 42 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.10 0.62 6.32 -2.39 -0.02 0.60 16 44 H 0.05 0.82 8.05 -2.39 -0.02 0.80 16 45 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 49 H 0.05 1.24 6.85 -2.39 -0.02 1.22 16 50 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.04 1.29 8.04 -2.39 -0.02 1.28 16 52 H 0.06 1.54 8.02 -2.38 -0.02 1.52 16 Total: -1.00 -89.79 404.74 0.51 -89.28 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: -0.41 Total: 39.27 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 5.87 Total: 14.60 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -6.76 Total: -126.02 kcal Atomic # 8 Polarization: -58.37 SS G_CDS: -0.10 Total: -58.46 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 1.90 Total: 41.34 kcal Total: -89.79 0.51 -89.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672184075.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.873 kcal (2) G-P(sol) polarization free energy of solvation -89.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds