Wall clock time and date at job start Tue Mar 31 2020 20:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99703 * 2 1 4 4 C 1.52996 * 109.47234 * 124.99963 * 3 2 1 5 5 C 1.50700 * 112.85015 * 298.19955 * 4 3 2 6 6 O 1.21286 * 119.99769 * 113.35193 * 5 4 3 7 7 N 1.34770 * 120.00010 * 293.35525 * 5 4 3 8 8 C 1.46507 * 119.99927 * 175.16377 * 7 5 4 9 9 H 1.08995 * 109.47433 * 34.71605 * 8 7 5 10 10 C 1.53001 * 109.46862 * 274.71712 * 8 7 5 11 11 C 1.52999 * 109.47119 * 154.72458 * 8 7 5 12 12 H 1.09002 * 109.46720 * 294.99431 * 11 8 7 13 13 C 1.52994 * 109.47476 * 54.99592 * 11 8 7 14 14 N 1.46904 * 109.46964 * 174.99859 * 11 8 7 15 15 C 1.46901 * 110.99712 * 154.99389 * 14 11 8 16 16 C 1.50704 * 109.46778 * 179.97438 * 15 14 11 17 17 O 1.21286 * 119.99911 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99705 * 179.97438 * 16 15 14 19 19 C 1.37103 * 119.99454 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00140 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99504 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99847 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99725 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47078 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47130 * 120.00037 * 23 21 19 26 26 H 1.48497 * 109.47157 * 240.00227 * 23 21 19 27 27 C 1.53780 * 113.69113 * 69.46803 * 4 3 2 28 28 C 1.53780 * 87.08477 * 89.12940 * 27 4 3 29 29 C 1.53783 * 113.61709 * 167.00450 * 4 3 2 30 30 H 1.08010 * 119.99420 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.00403 * 0.02562 * 1 2 3 32 32 H 1.08000 * 120.00692 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47163 * 4.99486 * 3 2 1 34 34 H 1.09004 * 109.47164 * 244.99518 * 3 2 1 35 35 H 0.96996 * 120.00068 * 354.88136 * 7 5 4 36 36 H 1.09000 * 109.47422 * 300.00359 * 10 8 7 37 37 H 1.09007 * 109.46729 * 59.99854 * 10 8 7 38 38 H 1.08997 * 109.47285 * 179.97438 * 10 8 7 39 39 H 1.09002 * 109.47027 * 299.99938 * 13 11 8 40 40 H 1.08998 * 109.47419 * 59.99682 * 13 11 8 41 41 H 1.09003 * 109.47092 * 180.02562 * 13 11 8 42 42 H 1.00894 * 110.99933 * 31.04036 * 14 11 8 43 43 H 1.08992 * 109.47200 * 299.99916 * 15 14 11 44 44 H 1.09005 * 109.46690 * 60.00331 * 15 14 11 45 45 H 0.96992 * 119.99865 * 0.02562 * 18 16 15 46 46 H 0.97005 * 119.99699 * 179.97438 * 22 21 19 47 47 H 1.09004 * 113.61781 * 203.67937 * 27 4 3 48 48 H 1.09004 * 113.61543 * 334.58093 * 27 4 3 49 49 H 1.09000 * 113.61398 * 270.89288 * 28 27 4 50 50 H 1.08997 * 113.62200 * 139.97777 * 28 27 4 51 51 H 1.08998 * 113.61280 * 25.34869 * 29 4 3 52 52 H 1.09002 * 113.61422 * 156.25128 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1816 5 6 2.3376 1.2466 2.5147 6 8 2.4885 0.2683 3.2156 7 7 1.5463 2.2562 2.9281 8 6 0.7852 2.1276 4.1734 9 1 1.3643 1.5519 4.8953 10 6 -0.5365 1.4103 3.8915 11 6 0.4991 3.5188 4.7422 12 1 1.4375 3.9954 5.0257 13 6 -0.2045 4.3685 3.6821 14 7 -0.3647 3.3964 5.9241 15 6 -0.1934 4.5460 6.8225 16 6 -1.0938 4.3858 8.0204 17 8 -1.8074 3.4098 8.1164 18 7 -1.1051 5.3266 8.9854 19 6 -1.9238 5.1806 10.0754 20 1 -2.5599 4.3119 10.1605 21 6 -1.9360 6.1508 11.0701 22 7 -1.1631 7.2085 10.9657 23 14 -3.0509 5.9515 12.5556 24 1 -3.8141 4.6834 12.4350 25 1 -2.2279 5.9178 13.7912 26 1 -3.9965 7.0946 12.6217 27 6 4.2118 0.3540 1.0373 28 6 4.9655 1.4879 0.3224 29 6 4.0708 2.4670 1.1008 30 1 -0.5400 -0.9354 -0.0004 31 1 -0.5400 0.9352 -0.0004 32 1 1.8501 -0.9352 -0.0004 33 1 1.3585 2.1317 0.0895 34 1 2.6213 1.4027 -0.9314 35 1 1.4838 3.0695 2.4033 36 1 -1.1156 1.9860 3.1695 37 1 -0.3326 0.4191 3.4861 38 1 -1.1025 1.3142 4.8180 39 1 0.4364 4.4593 2.8051 40 1 -1.1429 3.8919 3.3985 41 1 -0.4080 5.3598 4.0872 42 1 -0.1921 2.5291 6.4098 43 1 0.8442 4.5984 7.1519 44 1 -0.4534 5.4627 6.2931 45 1 -0.5342 6.1069 8.9087 46 1 -1.1719 7.8860 11.6599 47 1 4.6585 0.0648 1.9886 48 1 3.9940 -0.4988 0.3942 49 1 4.8019 1.5094 -0.7551 50 1 6.0195 1.5503 0.5929 51 1 3.7390 3.3201 0.5090 52 1 4.4788 2.7555 2.0695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674728173.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:44 Heat of formation + Delta-G solvation = -63.136935 kcal Electronic energy + Delta-G solvation = -29662.895527 eV Core-core repulsion = 25662.225586 eV Total energy + Delta-G solvation = -4000.669941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.79858 -40.29465 -39.43871 -38.12216 -36.06084 -35.37121 -35.11556 -33.28419 -32.13850 -30.19173 -29.18247 -28.13872 -26.63599 -26.22637 -25.93913 -24.49901 -22.06326 -21.13270 -20.93405 -20.71473 -19.94779 -19.62610 -18.37165 -17.69335 -17.31621 -16.83325 -16.69240 -16.44885 -16.22976 -16.01565 -15.66772 -15.40291 -15.18926 -15.05897 -14.77043 -14.47242 -14.26715 -14.05469 -13.57075 -13.54143 -13.42839 -13.29293 -13.11744 -13.06876 -12.89050 -12.82904 -12.76330 -12.52100 -12.40583 -12.12260 -12.07811 -12.00231 -11.92455 -11.67192 -11.51809 -11.45141 -11.14519 -10.60870 -10.36024 -10.17020 -10.08449 -10.01861 -9.38481 -8.47473 -5.95884 1.35964 1.39366 1.41349 1.55484 1.66326 2.04545 2.10855 2.30056 2.96620 3.19841 3.38211 3.47593 3.54645 3.64789 3.79906 3.89666 3.94606 4.02116 4.18892 4.21311 4.30108 4.33024 4.45519 4.47317 4.58029 4.60683 4.65252 4.68280 4.80501 4.81473 4.83953 4.89600 4.95506 5.01208 5.02309 5.03775 5.12698 5.16622 5.23765 5.27763 5.40824 5.48227 5.50472 5.53256 5.75258 5.87445 5.87964 6.08788 6.31423 6.58503 6.59962 7.12336 7.29694 7.55809 8.11288 8.70149 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024562 B = 0.001944 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.716477 B =14403.401780 C =14828.819634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C -0.059 4.059 4 C -0.100 4.100 5 C 0.528 3.472 6 O -0.587 6.587 7 N -0.706 5.706 8 C 0.149 3.851 9 H 0.060 0.940 10 C -0.146 4.146 11 C 0.082 3.918 12 H 0.056 0.944 13 C -0.141 4.141 14 N -0.668 5.668 15 C 0.066 3.934 16 C 0.438 3.562 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.014 4.014 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.274 1.274 25 H -0.271 1.271 26 H -0.270 1.270 27 C -0.123 4.123 28 C -0.129 4.129 29 C -0.121 4.121 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.413 0.587 36 H 0.073 0.927 37 H 0.039 0.961 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.342 0.658 43 H 0.064 0.936 44 H 0.108 0.892 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.104 0.896 50 H 0.075 0.925 51 H 0.103 0.897 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.110 -4.915 -27.494 30.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.183 4.183 3 C -0.096 4.096 4 C -0.103 4.103 5 C 0.316 3.684 6 O -0.466 6.466 7 N -0.360 5.360 8 C 0.043 3.957 9 H 0.078 0.922 10 C -0.204 4.204 11 C -0.027 4.027 12 H 0.074 0.926 13 C -0.198 4.198 14 N -0.301 5.301 15 C -0.066 4.066 16 C 0.225 3.775 17 O -0.509 6.509 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.195 1.195 27 C -0.161 4.161 28 C -0.166 4.166 29 C -0.159 4.159 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.126 0.874 35 H 0.251 0.749 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.161 0.839 43 H 0.082 0.918 44 H 0.126 0.874 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.093 0.907 49 H 0.123 0.877 50 H 0.093 0.907 51 H 0.121 0.879 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.200 -5.815 -27.123 29.915 hybrid contribution 0.388 0.102 1.567 1.618 sum 11.588 -5.713 -25.556 28.636 Atomic orbital electron populations 1.23960 0.96090 1.02308 1.00712 1.22976 0.96151 0.98946 1.00215 1.20548 0.96900 0.95644 0.96471 1.22218 0.95055 1.01513 0.91489 1.21002 0.77558 0.81740 0.88099 1.90678 1.64197 1.33855 1.57902 1.45972 1.45650 1.19645 1.24726 1.20797 0.92579 0.95709 0.86608 0.92215 1.21991 0.96504 0.99336 1.02555 1.21759 0.94743 0.94727 0.91513 0.92572 1.21882 1.01122 0.99453 0.97386 1.60235 1.56970 1.04271 1.08627 1.21588 0.97033 0.96506 0.91493 1.20874 0.86826 0.84070 0.85684 1.90498 1.46907 1.33182 1.80302 1.41931 1.38748 1.21543 1.18861 1.19688 1.20298 1.07385 0.98811 0.90420 1.26035 0.99066 0.94650 1.01596 1.69674 1.39593 1.10487 1.36327 0.84877 0.77882 0.78278 0.77337 1.19904 1.19632 1.19511 1.22860 0.94884 0.97498 1.00855 1.22838 0.99063 0.94274 1.00449 1.23001 0.94788 0.96522 1.01587 0.88872 0.87683 0.88114 0.89435 0.87377 0.74858 0.90798 0.94183 0.92061 0.89953 0.91903 0.92324 0.83922 0.91805 0.87359 0.76947 0.91299 0.91709 0.90720 0.87738 0.90658 0.87858 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.88 14.32 67.78 0.97 -1.91 16 2 C -0.16 -2.39 8.66 25.65 0.22 -2.17 16 3 C -0.06 -0.57 5.03 29.85 0.15 -0.42 16 4 C -0.10 -1.34 0.78 -52.40 -0.04 -1.38 16 5 C 0.53 11.28 6.17 87.66 0.54 11.82 16 6 O -0.59 -18.52 15.81 -3.05 -0.05 -18.56 16 7 N -0.71 -12.40 4.98 -442.53 -2.21 -14.61 16 8 C 0.15 3.39 2.35 44.99 0.11 3.50 16 9 H 0.06 1.71 7.50 -2.39 -0.02 1.69 16 10 C -0.15 -3.56 9.02 71.98 0.65 -2.91 16 11 C 0.08 1.81 2.66 44.91 0.12 1.93 16 12 H 0.06 1.17 7.80 -2.39 -0.02 1.15 16 13 C -0.14 -2.44 8.93 71.98 0.64 -1.80 16 14 N -0.67 -20.47 5.14 -495.57 -2.55 -23.01 16 15 C 0.07 2.22 5.97 85.56 0.51 2.73 16 16 C 0.44 20.84 7.82 87.66 0.69 21.52 16 17 O -0.62 -34.74 15.78 -3.05 -0.05 -34.79 16 18 N -0.57 -29.48 5.29 -306.98 -1.62 -31.10 16 19 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 20 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 21 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 22 N -0.92 -49.65 13.05 21.66 0.28 -49.37 16 23 Si 0.99 43.26 29.55 68.60 2.03 45.28 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 27 C -0.12 -1.80 6.75 31.12 0.21 -1.59 16 28 C -0.13 -1.07 7.73 31.12 0.24 -0.83 16 29 C -0.12 -1.08 7.22 31.12 0.22 -0.86 16 30 H 0.09 1.41 8.06 -2.91 -0.02 1.38 16 31 H 0.10 1.34 7.84 -2.91 -0.02 1.32 16 32 H 0.10 1.60 7.51 -2.91 -0.02 1.58 16 33 H 0.09 0.65 7.79 -2.39 -0.02 0.63 16 34 H 0.11 0.60 7.31 -2.39 -0.02 0.59 16 35 H 0.41 4.67 6.58 -92.71 -0.61 4.06 16 36 H 0.07 1.57 6.56 -2.39 -0.02 1.55 16 37 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.06 1.74 7.17 -2.39 -0.02 1.72 16 39 H 0.08 0.86 6.29 -2.39 -0.02 0.85 16 40 H 0.06 1.21 6.56 -2.39 -0.02 1.20 16 41 H 0.06 1.08 7.45 -2.39 -0.02 1.07 16 42 H 0.34 11.61 7.62 -89.70 -0.68 10.93 16 43 H 0.06 1.91 8.05 -2.39 -0.02 1.89 16 44 H 0.11 3.20 7.44 -2.38 -0.02 3.18 16 45 H 0.40 19.26 7.90 -92.71 -0.73 18.53 16 46 H 0.28 13.97 8.31 -92.70 -0.77 13.20 16 47 H 0.06 1.28 7.74 -2.39 -0.02 1.27 16 48 H 0.07 1.04 7.36 -2.38 -0.02 1.02 16 49 H 0.10 0.48 7.60 -2.39 -0.02 0.46 16 50 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.10 0.42 8.10 -2.39 -0.02 0.40 16 52 H 0.08 0.86 8.09 -2.39 -0.02 0.85 16 Total: -1.00 -73.94 415.59 1.26 -72.67 By element: Atomic # 1 Polarization: 45.41 SS G_CDS: -1.09 Total: 44.32 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 6.51 Total: 9.17 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -6.09 Total: -118.09 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: -0.10 Total: -53.35 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -73.94 1.26 -72.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674728173.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.536 kcal (2) G-P(sol) polarization free energy of solvation -73.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds