Wall clock time and date at job start Tue Mar 31 2020 20:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47417 * 2 1 4 4 C 1.53003 * 109.47409 * 120.00120 * 2 1 3 5 5 N 1.46498 * 109.47179 * 177.94467 * 4 2 1 6 6 C 1.46504 * 120.00001 * 83.61237 * 5 4 2 7 7 C 1.34775 * 120.00106 * 263.61337 * 5 4 2 8 8 O 1.21276 * 119.99999 * 4.28973 * 7 5 4 9 9 C 1.50697 * 119.99987 * 184.28563 * 7 5 4 10 10 C 1.53002 * 110.43672 * 56.19114 * 9 7 5 11 11 C 1.54889 * 110.75830 * 167.37900 * 10 9 7 12 12 C 1.54271 * 104.19439 * 203.74234 * 11 10 9 13 13 C 1.53874 * 106.59551 * 23.60867 * 12 11 10 14 14 C 1.54261 * 106.60305 * 0.02562 * 13 12 11 15 15 C 1.54630 * 110.48898 * 293.64728 * 9 7 5 16 16 C 1.54479 * 101.76731 * 266.12148 * 15 9 7 17 17 N 1.46761 * 105.47011 * 334.58144 * 16 15 9 18 18 C 1.34421 * 111.30528 * 17.01908 * 17 16 15 19 19 O 1.21276 * 124.94392 * 179.62895 * 18 17 16 20 20 N 1.46498 * 109.47315 * 240.00108 * 2 1 3 21 21 C 1.36944 * 120.00087 * 84.06360 * 20 2 1 22 22 H 1.08007 * 119.99521 * 5.45294 * 21 20 2 23 23 C 1.38804 * 120.00390 * 185.45144 * 21 20 2 24 24 N 1.31616 * 120.00377 * 185.33710 * 23 21 20 25 25 Si 1.86805 * 119.99987 * 5.61679 * 23 21 20 26 26 H 1.48499 * 109.46892 * 265.15946 * 25 23 21 27 27 H 1.48504 * 109.46999 * 25.15365 * 25 23 21 28 28 H 1.48490 * 109.47529 * 145.15726 * 25 23 21 29 29 H 1.09004 * 109.47286 * 299.99365 * 1 2 3 30 30 H 1.08995 * 109.47468 * 59.99922 * 1 2 3 31 31 H 1.09007 * 109.46628 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46843 * 297.94640 * 4 2 1 33 33 H 1.09000 * 109.46840 * 57.94414 * 4 2 1 34 34 H 1.08998 * 109.46899 * 90.97883 * 6 5 4 35 35 H 1.09003 * 109.47040 * 210.97903 * 6 5 4 36 36 H 1.08995 * 109.47048 * 330.97613 * 6 5 4 37 37 H 1.09004 * 110.67028 * 290.81338 * 10 9 7 38 38 H 1.09000 * 110.48492 * 322.41970 * 11 10 9 39 39 H 1.09001 * 110.48836 * 85.06536 * 11 10 9 40 40 H 1.08998 * 110.03226 * 264.32307 * 12 11 10 41 41 H 1.08996 * 110.07105 * 142.91561 * 12 11 10 42 42 H 1.09009 * 110.03219 * 240.71562 * 13 12 11 43 43 H 1.09006 * 110.07081 * 119.30926 * 13 12 11 44 44 H 1.09001 * 110.48562 * 217.71361 * 14 13 12 45 45 H 1.08998 * 110.48768 * 95.06849 * 14 13 12 46 46 H 1.09003 * 110.96613 * 24.24071 * 15 9 7 47 47 H 1.08997 * 110.97111 * 147.96496 * 15 9 7 48 48 H 1.09001 * 110.24665 * 93.58296 * 16 15 9 49 49 H 1.08996 * 110.24873 * 215.49832 * 16 15 9 50 50 H 0.97009 * 124.34781 * 196.99357 * 17 16 15 51 51 H 0.96999 * 120.00263 * 264.06974 * 20 2 1 52 52 H 0.97005 * 120.00256 * 180.27904 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5042 -0.7643 1.2247 6 6 4.2789 0.3821 1.7063 7 6 4.1385 -1.8585 0.7590 8 8 3.4995 -2.7755 0.2884 9 6 5.6418 -1.9423 0.8229 10 6 6.1268 -1.7513 2.2614 11 6 7.6190 -2.1446 2.3943 12 6 7.7871 -2.4920 3.8880 13 6 6.3914 -2.8766 4.4095 14 6 5.4241 -2.7501 3.2145 15 6 6.2828 -0.8877 -0.1088 16 6 6.4991 -1.7015 -1.4040 17 7 6.6016 -3.1010 -0.9744 18 6 6.1222 -3.2662 0.2705 19 8 6.0815 -4.3226 0.8647 20 7 2.0183 -0.6906 -1.1961 21 6 2.1310 -0.0122 -2.3804 22 1 1.9445 1.0511 -2.4135 23 6 2.4848 -0.6911 -3.5383 24 7 2.6956 -0.0248 -4.6535 25 14 2.6540 -2.5513 -3.5156 26 1 4.0751 -2.9162 -3.2867 27 1 1.8172 -3.1112 -2.4239 28 1 2.2043 -3.1053 -4.8178 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 1.7071 -0.1866 2.1388 33 1 1.6469 -1.7377 1.2678 34 1 4.4900 0.2575 2.7684 35 1 5.2167 0.4446 1.1543 36 1 3.7064 1.2971 1.5545 37 1 5.9644 -0.7245 2.5891 38 1 7.8416 -3.0124 1.7734 39 1 8.2603 -1.3059 2.1232 40 1 8.1637 -1.6262 4.4326 41 1 8.4727 -3.3316 4.0019 42 1 6.0907 -2.1973 5.2073 43 1 6.3989 -3.9030 4.7764 44 1 4.4633 -2.3528 3.5418 45 1 5.2923 -3.7158 2.7265 46 1 5.6019 -0.0541 -0.2810 47 1 7.2323 -0.5362 0.2948 48 1 5.6500 -1.5743 -2.0756 49 1 7.4194 -1.3885 -1.8969 50 1 6.9680 -3.8153 -1.5190 51 1 2.2618 -1.6283 -1.1494 52 1 2.9389 -0.4996 -5.4637 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676365204.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:18 Heat of formation + Delta-G solvation = -48.756346 kcal Electronic energy + Delta-G solvation = -33314.804050 eV Core-core repulsion = 29314.757698 eV Total energy + Delta-G solvation = -4000.046352 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.62632 -38.91021 -37.61523 -36.25943 -36.16930 -34.62673 -32.49964 -31.68619 -29.31847 -28.95876 -28.62787 -27.26184 -26.65771 -25.36497 -23.35736 -22.33165 -21.74580 -20.53451 -20.13342 -19.56603 -18.71312 -17.62010 -17.30941 -16.96754 -16.17995 -15.78423 -15.43363 -15.02944 -14.89246 -14.62034 -14.23435 -13.85203 -13.73638 -13.62423 -13.49558 -13.19915 -13.05531 -12.81340 -12.66870 -12.51235 -12.35281 -12.18950 -11.86360 -11.59979 -11.52121 -11.44426 -11.24151 -11.23135 -11.09736 -10.86647 -10.81635 -10.65019 -10.61434 -10.48726 -10.45754 -9.99760 -9.56297 -9.48603 -9.34008 -8.93631 -8.85121 -8.30926 -7.18355 -5.74773 -3.07259 2.60418 2.86022 3.26908 3.44122 3.52035 3.53747 3.66098 4.15502 4.30198 4.35509 4.61238 4.66613 4.71559 4.75487 4.92690 5.13967 5.17138 5.22497 5.30409 5.36450 5.41379 5.47691 5.51409 5.53465 5.54515 5.62761 5.64321 5.65593 5.69128 5.79197 5.84157 5.87244 5.89702 5.91332 6.01474 6.08235 6.16061 6.17237 6.24223 6.27466 6.43744 6.48381 6.69069 6.77583 6.88530 7.03008 7.13747 7.58482 8.05337 8.38116 8.43147 8.47375 9.29701 10.02803 10.25129 11.43139 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.005402 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.159534 B = 5182.201470 C = 6228.706252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.161 3.839 3 H 0.053 0.947 4 C 0.106 3.894 5 N -0.598 5.598 6 C 0.064 3.936 7 C 0.547 3.453 8 O -0.524 6.524 9 C -0.107 4.107 10 C -0.076 4.076 11 C -0.122 4.122 12 C -0.119 4.119 13 C -0.119 4.119 14 C -0.132 4.132 15 C -0.131 4.131 16 C 0.095 3.905 17 N -0.727 5.727 18 C 0.556 3.444 19 O -0.520 6.520 20 N -0.745 5.745 21 C -0.236 4.236 22 H 0.087 0.913 23 C 0.008 3.992 24 N -0.935 5.935 25 Si 0.873 3.127 26 H -0.285 1.285 27 H -0.272 1.272 28 H -0.296 1.296 29 H 0.039 0.961 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.093 0.907 46 H 0.109 0.891 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.084 0.916 50 H 0.411 0.589 51 H 0.373 0.627 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.730 1.570 17.257 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.050 3.950 3 H 0.071 0.929 4 C -0.017 4.017 5 N -0.330 5.330 6 C -0.079 4.079 7 C 0.334 3.666 8 O -0.399 6.399 9 C -0.114 4.114 10 C -0.095 4.095 11 C -0.159 4.159 12 C -0.156 4.156 13 C -0.157 4.157 14 C -0.169 4.169 15 C -0.168 4.168 16 C -0.030 4.030 17 N -0.381 5.381 18 C 0.340 3.660 19 O -0.395 6.395 20 N -0.391 5.391 21 C -0.366 4.366 22 H 0.105 0.895 23 C -0.188 4.188 24 N -0.583 5.583 25 Si 0.703 3.297 26 H -0.212 1.212 27 H -0.197 1.197 28 H -0.223 1.223 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.111 0.889 46 H 0.127 0.873 47 H 0.112 0.888 48 H 0.105 0.895 49 H 0.102 0.898 50 H 0.249 0.751 51 H 0.208 0.792 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.313 0.771 17.221 20.088 hybrid contribution 0.193 -1.438 -0.626 1.580 sum 10.506 -0.666 16.595 19.653 Atomic orbital electron populations 1.22379 0.98578 1.01060 1.00531 1.20594 0.92098 0.95813 0.86493 0.92891 1.21939 0.78567 1.02688 0.98520 1.47412 1.06756 1.15591 1.63244 1.22220 0.97529 0.89239 0.98893 1.19466 0.87649 0.82246 0.77276 1.90731 1.67271 1.38221 1.43646 1.21604 0.94705 0.96791 0.98257 1.22251 0.95783 1.01088 0.90391 1.22506 0.95048 1.01273 0.97118 1.22053 0.97323 1.00830 0.95434 1.22056 0.94715 1.01202 0.97679 1.22620 0.97602 1.01206 0.95480 1.22974 1.02249 0.97736 0.93858 1.22199 1.03560 0.79999 0.97198 1.46074 1.64019 1.11428 1.16615 1.19786 0.75718 0.89067 0.81413 1.90662 1.56052 1.30027 1.62795 1.42945 1.78833 1.11003 1.06273 1.19051 1.39035 0.93770 0.84727 0.89504 1.24584 1.01934 0.96752 0.95482 1.69717 1.54233 1.34185 1.00158 0.86693 0.78418 0.87976 0.76587 1.21181 1.19730 1.22299 0.94231 0.92104 0.93505 0.90585 0.89964 0.92642 0.90085 0.90645 0.88409 0.91154 0.91506 0.91963 0.92008 0.92190 0.91999 0.92036 0.88872 0.87313 0.88842 0.89542 0.89790 0.75081 0.79182 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.48 37.16 0.35 -2.50 16 2 C 0.16 2.98 3.16 -67.93 -0.21 2.77 16 3 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 4 C 0.11 1.64 5.06 -4.04 -0.02 1.62 16 5 N -0.60 -8.89 2.73 -181.57 -0.50 -9.39 16 6 C 0.06 0.67 8.49 59.85 0.51 1.18 16 7 C 0.55 9.68 5.17 -10.99 -0.06 9.62 16 8 O -0.52 -11.83 13.77 5.56 0.08 -11.75 16 9 C -0.11 -1.55 0.13 -155.67 -0.02 -1.57 16 10 C -0.08 -0.88 1.79 -88.61 -0.16 -1.04 16 11 C -0.12 -1.28 5.53 -25.07 -0.14 -1.42 16 12 C -0.12 -1.12 6.80 -25.61 -0.17 -1.29 16 13 C -0.12 -1.23 6.80 -25.62 -0.17 -1.40 16 14 C -0.13 -1.70 5.32 -25.06 -0.13 -1.83 16 15 C -0.13 -1.61 4.82 -25.10 -0.12 -1.73 16 16 C 0.09 1.34 7.78 -3.12 -0.02 1.32 16 17 N -0.73 -11.12 6.24 -59.20 -0.37 -11.49 16 18 C 0.56 9.52 4.78 -10.86 -0.05 9.47 16 19 O -0.52 -10.25 15.05 5.56 0.08 -10.17 16 20 N -0.75 -17.78 4.47 -53.43 -0.24 -18.02 16 21 C -0.24 -6.52 10.40 -15.06 -0.16 -6.68 16 22 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 23 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 24 N -0.93 -28.94 13.97 55.49 0.78 -28.16 16 25 Si 0.87 23.66 27.69 -169.99 -4.71 18.96 16 26 H -0.28 -7.54 7.10 56.52 0.40 -7.14 16 27 H -0.27 -7.59 6.62 56.52 0.37 -7.21 16 28 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 33 H 0.08 1.45 7.30 -51.93 -0.38 1.07 16 34 H 0.06 0.45 6.93 -51.93 -0.36 0.09 16 35 H 0.08 0.78 3.73 -51.93 -0.19 0.59 16 36 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 37 H 0.10 0.91 4.89 -51.93 -0.25 0.66 16 38 H 0.07 0.90 5.97 -51.93 -0.31 0.59 16 39 H 0.07 0.56 7.73 -51.93 -0.40 0.16 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 1.54 5.76 -51.93 -0.30 1.24 16 46 H 0.11 1.40 5.88 -51.93 -0.31 1.09 16 47 H 0.09 0.83 7.11 -51.93 -0.37 0.46 16 48 H 0.09 1.58 8.13 -51.93 -0.42 1.16 16 49 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.41 5.60 8.96 -40.82 -0.37 5.24 16 51 H 0.37 9.49 3.58 -40.82 -0.15 9.35 16 52 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 LS Contribution 385.65 15.07 5.81 5.81 Total: -1.00 -36.27 385.65 -8.20 -44.48 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -8.46 Total: 13.07 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -0.68 Total: 6.66 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -0.33 Total: -67.06 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.16 Total: -21.92 kcal Atomic # 14 Polarization: 23.66 SS G_CDS: -4.71 Total: 18.96 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.27 -8.20 -44.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676365204.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.281 kcal (2) G-P(sol) polarization free energy of solvation -36.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds