Wall clock time and date at job start Tue Mar 31 2020 20:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47417 * 2 1 4 4 C 1.53003 * 109.47409 * 120.00120 * 2 1 3 5 5 N 1.46498 * 109.47179 * 177.94467 * 4 2 1 6 6 C 1.46504 * 120.00001 * 83.61237 * 5 4 2 7 7 C 1.34775 * 120.00106 * 263.61337 * 5 4 2 8 8 O 1.21276 * 119.99999 * 4.28973 * 7 5 4 9 9 C 1.50697 * 119.99987 * 184.28563 * 7 5 4 10 10 C 1.53002 * 110.43672 * 56.19114 * 9 7 5 11 11 C 1.54889 * 110.75830 * 167.37900 * 10 9 7 12 12 C 1.54271 * 104.19439 * 203.74234 * 11 10 9 13 13 C 1.53874 * 106.59551 * 23.60867 * 12 11 10 14 14 C 1.54261 * 106.60305 * 0.02562 * 13 12 11 15 15 C 1.54630 * 110.48898 * 293.64728 * 9 7 5 16 16 C 1.54479 * 101.76731 * 266.12148 * 15 9 7 17 17 N 1.46761 * 105.47011 * 334.58144 * 16 15 9 18 18 C 1.34421 * 111.30528 * 17.01908 * 17 16 15 19 19 O 1.21276 * 124.94392 * 179.62895 * 18 17 16 20 20 N 1.46498 * 109.47315 * 240.00108 * 2 1 3 21 21 C 1.36944 * 120.00087 * 84.06360 * 20 2 1 22 22 H 1.08007 * 119.99521 * 5.45294 * 21 20 2 23 23 C 1.38804 * 120.00390 * 185.45144 * 21 20 2 24 24 N 1.31616 * 120.00377 * 185.33710 * 23 21 20 25 25 Si 1.86805 * 119.99987 * 5.61679 * 23 21 20 26 26 H 1.48499 * 109.46892 * 265.15946 * 25 23 21 27 27 H 1.48504 * 109.46999 * 25.15365 * 25 23 21 28 28 H 1.48490 * 109.47529 * 145.15726 * 25 23 21 29 29 H 1.09004 * 109.47286 * 299.99365 * 1 2 3 30 30 H 1.08995 * 109.47468 * 59.99922 * 1 2 3 31 31 H 1.09007 * 109.46628 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46843 * 297.94640 * 4 2 1 33 33 H 1.09000 * 109.46840 * 57.94414 * 4 2 1 34 34 H 1.08998 * 109.46899 * 90.97883 * 6 5 4 35 35 H 1.09003 * 109.47040 * 210.97903 * 6 5 4 36 36 H 1.08995 * 109.47048 * 330.97613 * 6 5 4 37 37 H 1.09004 * 110.67028 * 290.81338 * 10 9 7 38 38 H 1.09000 * 110.48492 * 322.41970 * 11 10 9 39 39 H 1.09001 * 110.48836 * 85.06536 * 11 10 9 40 40 H 1.08998 * 110.03226 * 264.32307 * 12 11 10 41 41 H 1.08996 * 110.07105 * 142.91561 * 12 11 10 42 42 H 1.09009 * 110.03219 * 240.71562 * 13 12 11 43 43 H 1.09006 * 110.07081 * 119.30926 * 13 12 11 44 44 H 1.09001 * 110.48562 * 217.71361 * 14 13 12 45 45 H 1.08998 * 110.48768 * 95.06849 * 14 13 12 46 46 H 1.09003 * 110.96613 * 24.24071 * 15 9 7 47 47 H 1.08997 * 110.97111 * 147.96496 * 15 9 7 48 48 H 1.09001 * 110.24665 * 93.58296 * 16 15 9 49 49 H 1.08996 * 110.24873 * 215.49832 * 16 15 9 50 50 H 0.97009 * 124.34781 * 196.99357 * 17 16 15 51 51 H 0.96999 * 120.00263 * 264.06974 * 20 2 1 52 52 H 0.97005 * 120.00256 * 180.27904 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5042 -0.7643 1.2247 6 6 4.2789 0.3821 1.7063 7 6 4.1385 -1.8585 0.7590 8 8 3.4995 -2.7755 0.2884 9 6 5.6418 -1.9423 0.8229 10 6 6.1268 -1.7513 2.2614 11 6 7.6190 -2.1446 2.3943 12 6 7.7871 -2.4920 3.8880 13 6 6.3914 -2.8766 4.4095 14 6 5.4241 -2.7501 3.2145 15 6 6.2828 -0.8877 -0.1088 16 6 6.4991 -1.7015 -1.4040 17 7 6.6016 -3.1010 -0.9744 18 6 6.1222 -3.2662 0.2705 19 8 6.0815 -4.3226 0.8647 20 7 2.0183 -0.6906 -1.1961 21 6 2.1310 -0.0122 -2.3804 22 1 1.9445 1.0511 -2.4135 23 6 2.4848 -0.6911 -3.5383 24 7 2.6956 -0.0248 -4.6535 25 14 2.6540 -2.5513 -3.5156 26 1 4.0751 -2.9162 -3.2867 27 1 1.8172 -3.1112 -2.4239 28 1 2.2043 -3.1053 -4.8178 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 1.7071 -0.1866 2.1388 33 1 1.6469 -1.7377 1.2678 34 1 4.4900 0.2575 2.7684 35 1 5.2167 0.4446 1.1543 36 1 3.7064 1.2971 1.5545 37 1 5.9644 -0.7245 2.5891 38 1 7.8416 -3.0124 1.7734 39 1 8.2603 -1.3059 2.1232 40 1 8.1637 -1.6262 4.4326 41 1 8.4727 -3.3316 4.0019 42 1 6.0907 -2.1973 5.2073 43 1 6.3989 -3.9030 4.7764 44 1 4.4633 -2.3528 3.5418 45 1 5.2923 -3.7158 2.7265 46 1 5.6019 -0.0541 -0.2810 47 1 7.2323 -0.5362 0.2948 48 1 5.6500 -1.5743 -2.0756 49 1 7.4194 -1.3885 -1.8969 50 1 6.9680 -3.8153 -1.5190 51 1 2.2618 -1.6283 -1.1494 52 1 2.9389 -0.4996 -5.4637 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676365204.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:15 Heat of formation + Delta-G solvation = -75.993369 kcal Electronic energy + Delta-G solvation = -33315.985136 eV Core-core repulsion = 29314.757698 eV Total energy + Delta-G solvation = -4001.227438 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.79010 -40.22090 -38.56360 -37.75827 -37.49999 -36.09659 -34.18243 -33.14472 -31.15171 -29.94185 -29.53606 -28.30966 -27.73689 -26.55338 -25.37076 -23.41684 -22.94234 -21.76537 -21.19957 -20.72465 -19.99253 -19.56166 -18.54364 -18.15541 -17.44418 -16.83152 -16.78739 -16.43862 -16.26014 -16.03517 -15.53518 -15.19845 -15.01940 -14.73680 -14.70160 -14.56484 -14.46105 -14.19181 -14.00913 -13.85996 -13.64997 -13.39563 -13.17800 -13.04505 -12.90793 -12.70107 -12.51976 -12.37912 -12.29875 -12.13314 -12.05930 -11.94057 -11.83606 -11.80011 -11.75826 -11.59218 -11.21254 -11.01880 -10.76560 -10.58216 -10.16990 -9.55600 -9.22516 -8.04890 -5.29854 1.22296 1.27312 1.33109 1.42268 1.59325 2.11880 2.36437 2.41447 3.02541 3.28200 3.30498 3.38620 3.59462 3.67944 3.81799 3.86512 4.01561 4.10138 4.21165 4.32530 4.40417 4.45682 4.53818 4.58244 4.60055 4.61644 4.65798 4.68318 4.71281 4.74836 4.79836 4.86597 4.88987 4.96043 5.00712 5.02392 5.07419 5.12466 5.24752 5.26250 5.32553 5.44784 5.48363 5.55072 5.66931 5.70947 5.82347 5.92471 6.22199 6.40328 7.10479 7.13637 7.19706 7.94086 8.10650 9.16979 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.005402 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.159534 B = 5182.201470 C = 6228.706252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.065 0.935 4 C 0.111 3.889 5 N -0.594 5.594 6 C 0.050 3.950 7 C 0.537 3.463 8 O -0.587 6.587 9 C -0.102 4.102 10 C -0.069 4.069 11 C -0.121 4.121 12 C -0.116 4.116 13 C -0.116 4.116 14 C -0.135 4.135 15 C -0.122 4.122 16 C 0.090 3.910 17 N -0.727 5.727 18 C 0.543 3.457 19 O -0.558 6.558 20 N -0.753 5.753 21 C -0.202 4.202 22 H 0.073 0.927 23 C -0.040 4.040 24 N -0.972 5.972 25 Si 0.920 3.080 26 H -0.284 1.284 27 H -0.289 1.289 28 H -0.302 1.302 29 H 0.085 0.915 30 H 0.036 0.964 31 H 0.033 0.967 32 H 0.127 0.873 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.134 0.866 38 H 0.040 0.960 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.047 0.953 46 H 0.107 0.893 47 H 0.141 0.859 48 H 0.038 0.962 49 H 0.123 0.877 50 H 0.413 0.587 51 H 0.365 0.635 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.302 4.433 20.425 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.042 3.958 3 H 0.083 0.917 4 C -0.012 4.012 5 N -0.324 5.324 6 C -0.091 4.091 7 C 0.325 3.675 8 O -0.467 6.467 9 C -0.109 4.109 10 C -0.088 4.088 11 C -0.158 4.158 12 C -0.153 4.153 13 C -0.154 4.154 14 C -0.172 4.172 15 C -0.159 4.159 16 C -0.034 4.034 17 N -0.381 5.381 18 C 0.329 3.671 19 O -0.436 6.436 20 N -0.397 5.397 21 C -0.334 4.334 22 H 0.091 0.909 23 C -0.232 4.232 24 N -0.624 5.624 25 Si 0.752 3.248 26 H -0.211 1.211 27 H -0.215 1.215 28 H -0.229 1.229 29 H 0.104 0.896 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.145 0.855 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.151 0.849 38 H 0.059 0.941 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.125 0.875 47 H 0.159 0.841 48 H 0.056 0.944 49 H 0.141 0.859 50 H 0.252 0.748 51 H 0.199 0.801 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.889 3.691 20.443 23.935 hybrid contribution -0.385 -2.304 -1.531 2.793 sum 11.504 1.387 18.912 22.180 Atomic orbital electron populations 1.22256 0.97319 1.00614 1.01602 1.20962 0.92957 0.96149 0.85697 0.91739 1.21896 0.79170 1.01448 0.98714 1.47560 1.06810 1.16073 1.61991 1.22619 0.97664 0.87847 1.00927 1.20079 0.88909 0.82105 0.76428 1.90699 1.68762 1.40625 1.46639 1.21615 0.92736 0.95846 1.00683 1.22377 0.96233 1.02362 0.87809 1.22520 0.94562 1.01291 0.97439 1.22068 0.96479 1.01882 0.94877 1.22059 0.94830 1.01296 0.97170 1.22550 0.98590 0.99407 0.96700 1.23109 1.04235 0.96454 0.92084 1.22300 1.03437 0.79759 0.97908 1.46221 1.63308 1.12292 1.16296 1.20371 0.75250 0.89762 0.81752 1.90635 1.57439 1.31668 1.63862 1.43132 1.79021 1.10733 1.06835 1.19093 1.35398 0.93098 0.85774 0.90939 1.24935 1.03858 0.98597 0.95816 1.69792 1.57034 1.34910 1.00659 0.85950 0.77977 0.85608 0.75224 1.21082 1.21537 1.22911 0.89640 0.94494 0.94736 0.85530 0.92605 0.89255 0.89056 0.89141 0.84887 0.94124 0.88266 0.89019 0.92515 0.89797 0.93205 0.92165 0.93459 0.87523 0.84080 0.94401 0.85911 0.74790 0.80070 0.93635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.16 9.48 71.98 0.68 -4.47 16 2 C 0.15 5.32 3.16 44.99 0.14 5.46 16 3 H 0.06 2.16 8.09 -2.39 -0.02 2.14 16 4 C 0.11 3.17 5.06 86.38 0.44 3.61 16 5 N -0.59 -16.21 2.73 -846.77 -2.32 -18.53 16 6 C 0.05 0.80 8.49 127.77 1.09 1.88 16 7 C 0.54 18.73 5.17 87.66 0.45 19.19 16 8 O -0.59 -27.56 13.77 -3.02 -0.04 -27.60 16 9 C -0.10 -2.83 0.13 -52.93 -0.01 -2.84 16 10 C -0.07 -1.39 1.79 -9.49 -0.02 -1.41 16 11 C -0.12 -2.13 5.53 31.67 0.18 -1.96 16 12 C -0.12 -1.78 6.80 31.32 0.21 -1.56 16 13 C -0.12 -2.12 6.80 31.32 0.21 -1.91 16 14 C -0.13 -3.32 5.32 31.68 0.17 -3.15 16 15 C -0.12 -2.65 4.82 31.65 0.15 -2.49 16 16 C 0.09 2.48 7.78 86.83 0.68 3.15 16 17 N -0.73 -22.62 6.24 -459.82 -2.87 -25.48 16 18 C 0.54 18.98 4.78 87.90 0.42 19.40 16 19 O -0.56 -23.23 15.05 -3.02 -0.05 -23.27 16 20 N -0.75 -35.92 4.47 -322.94 -1.44 -37.36 16 21 C -0.20 -11.27 10.40 84.03 0.87 -10.39 16 22 H 0.07 4.25 8.06 -2.91 -0.02 4.22 16 23 C -0.04 -2.39 5.50 84.86 0.47 -1.92 16 24 N -0.97 -61.42 13.97 21.65 0.30 -61.11 16 25 Si 0.92 51.12 27.69 68.60 1.90 53.02 16 26 H -0.28 -15.47 7.10 99.48 0.71 -14.76 16 27 H -0.29 -16.67 6.62 99.48 0.66 -16.01 16 28 H -0.30 -16.81 7.11 99.48 0.71 -16.10 16 29 H 0.08 2.01 8.14 -2.38 -0.02 2.00 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.13 2.37 8.12 -2.39 -0.02 2.35 16 33 H 0.06 1.93 7.30 -2.39 -0.02 1.92 16 34 H 0.09 0.89 6.93 -2.39 -0.02 0.87 16 35 H 0.09 1.29 3.73 -2.39 -0.01 1.28 16 36 H 0.09 1.24 8.06 -2.39 -0.02 1.22 16 37 H 0.13 1.71 4.89 -2.38 -0.01 1.70 16 38 H 0.04 0.98 5.97 -2.39 -0.01 0.97 16 39 H 0.10 1.11 7.73 -2.39 -0.02 1.09 16 40 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 44 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 45 H 0.05 1.63 5.76 -2.39 -0.01 1.61 16 46 H 0.11 2.42 5.88 -2.39 -0.01 2.40 16 47 H 0.14 1.73 7.11 -2.39 -0.02 1.71 16 48 H 0.04 1.42 8.13 -2.39 -0.02 1.40 16 49 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 50 H 0.41 11.73 8.96 -92.70 -0.83 10.90 16 51 H 0.37 18.96 3.58 -92.71 -0.33 18.63 16 52 H 0.25 15.58 8.31 -92.70 -0.77 14.81 16 Total: -1.00 -86.54 385.65 1.35 -85.20 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: -0.27 Total: 34.55 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 6.13 Total: 20.60 kcal Atomic # 7 Polarization: -136.17 SS G_CDS: -6.33 Total: -142.49 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -0.09 Total: -50.87 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 1.90 Total: 53.02 kcal Total: -86.54 1.35 -85.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676365204.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.202 kcal (2) G-P(sol) polarization free energy of solvation -86.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds