Wall clock time and date at job start Tue Mar 31 2020 20:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50706 * 119.99494 * 2 1 4 4 C 1.32986 * 120.00329 * 180.02562 * 2 1 3 5 5 C 1.47106 * 120.00138 * 359.97438 * 4 2 1 6 6 O 1.21617 * 119.99629 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00040 * 180.02562 * 5 4 2 8 8 C 1.46506 * 119.99969 * 180.02562 * 7 5 4 9 9 H 1.09005 * 109.46722 * 324.72200 * 8 7 5 10 10 C 1.52995 * 109.47182 * 84.72073 * 8 7 5 11 11 C 1.52999 * 109.47091 * 204.72183 * 8 7 5 12 12 H 1.08995 * 109.50377 * 299.99636 * 11 8 7 13 13 C 1.53120 * 109.50183 * 60.07817 * 11 8 7 14 14 C 1.53125 * 109.15894 * 177.59714 * 13 11 8 15 15 C 1.53041 * 109.27462 * 302.34188 * 14 13 11 16 16 N 1.46844 * 109.52332 * 59.18126 * 15 14 13 17 17 C 1.46899 * 111.00101 * 174.15741 * 16 15 14 18 18 C 1.50696 * 109.47209 * 293.95575 * 17 16 15 19 19 O 1.21296 * 120.00275 * 359.97438 * 18 17 16 20 20 N 1.34780 * 120.00316 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00100 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99986 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99619 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00314 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 119.99766 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46986 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47007 * 119.99553 * 25 23 21 28 28 H 1.48494 * 109.47208 * 239.99770 * 25 23 21 29 29 C 1.46846 * 111.23227 * 298.27658 * 16 15 14 30 30 H 1.09001 * 109.46702 * 239.99520 * 1 2 3 31 31 H 1.08994 * 109.47701 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47047 * 120.00119 * 1 2 3 33 33 H 1.08994 * 109.47126 * 270.00329 * 3 2 1 34 34 H 1.09003 * 109.47057 * 30.00640 * 3 2 1 35 35 H 1.09002 * 109.46747 * 150.00163 * 3 2 1 36 36 H 1.07998 * 120.00321 * 179.97438 * 4 2 1 37 37 H 0.97005 * 120.00161 * 359.72096 * 7 5 4 38 38 H 1.09002 * 109.47097 * 180.02562 * 10 8 7 39 39 H 1.09007 * 109.47360 * 299.99766 * 10 8 7 40 40 H 1.08997 * 109.47379 * 60.00113 * 10 8 7 41 41 H 1.09001 * 109.52088 * 297.49652 * 13 11 8 42 42 H 1.08997 * 109.52560 * 57.62774 * 13 11 8 43 43 H 1.08993 * 109.50502 * 62.28403 * 14 13 11 44 44 H 1.08998 * 109.50230 * 182.36305 * 14 13 11 45 45 H 1.08998 * 109.46173 * 179.19383 * 15 14 13 46 46 H 1.08999 * 109.46513 * 299.16211 * 15 14 13 47 47 H 1.09003 * 109.47112 * 53.95371 * 17 16 15 48 48 H 1.09000 * 109.47024 * 173.95721 * 17 16 15 49 49 H 0.96996 * 119.99370 * 359.97438 * 20 18 17 50 50 H 0.96994 * 119.99961 * 180.02562 * 24 23 21 51 51 H 1.08999 * 109.43109 * 301.68215 * 29 16 15 52 52 H 1.09007 * 109.49456 * 181.71609 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 1.4366 -2.4257 -0.0005 6 8 0.2204 -2.4257 -0.0005 7 7 2.1105 -3.5928 -0.0005 8 6 1.3781 -4.8616 -0.0011 9 1 0.4696 -4.7569 0.5921 10 6 1.0087 -5.2366 -1.4376 11 6 2.2577 -5.9585 0.6023 12 1 3.1663 -6.0636 0.0095 13 6 2.6261 -5.5848 2.0407 14 6 3.4558 -6.7148 2.6568 15 6 2.6554 -8.0181 2.5997 16 7 2.3282 -8.3322 1.2031 17 6 1.6804 -9.6464 1.0970 18 6 2.6609 -10.7226 1.4863 19 8 3.7885 -10.4242 1.8189 20 7 2.2849 -12.0167 1.4648 21 6 3.1767 -12.9956 1.8195 22 1 4.1807 -12.7299 2.1157 23 6 2.7891 -14.3298 1.7968 24 7 1.5676 -14.6532 1.4360 25 14 4.0045 -15.6639 2.2794 26 1 5.3032 -15.0422 2.6430 27 1 3.4746 -16.4187 3.4432 28 1 4.2016 -16.5909 1.1363 29 6 1.4925 -7.2838 0.6039 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3634 1.0276 0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 2.4420 1.6199 -1.0276 34 1 1.6713 2.0648 0.5139 35 1 3.2129 1.1749 0.5138 36 1 3.2520 -1.1517 -0.0009 37 1 3.0806 -3.5928 -0.0046 38 1 0.4634 -6.1804 -1.4380 39 1 0.3820 -4.4552 -1.8675 40 1 1.9171 -5.3413 -2.0309 41 1 3.2091 -4.6638 2.0399 42 1 1.7167 -5.4398 2.6238 43 1 4.3832 -6.8325 2.0964 44 1 3.6857 -6.4734 3.6945 45 1 3.2489 -8.8276 3.0245 46 1 1.7347 -7.9042 3.1718 47 1 0.8187 -9.6817 1.7636 48 1 1.3524 -9.8080 0.0701 49 1 1.3830 -12.2552 1.1992 50 1 1.2969 -15.5845 1.4205 51 1 0.5768 -7.1739 1.1848 52 1 1.2417 -7.5596 -0.4204 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690492903.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:28 Heat of formation + Delta-G solvation = -90.890532 kcal Electronic energy + Delta-G solvation = -29355.444440 eV Core-core repulsion = 25353.571012 eV Total energy + Delta-G solvation = -4001.873427 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.22335 -40.52476 -39.40092 -37.16128 -36.08063 -35.79378 -34.06528 -33.22659 -32.91587 -30.00388 -29.06086 -28.67294 -28.47786 -26.46997 -25.16705 -23.87278 -22.70663 -21.58936 -21.00103 -20.76771 -19.87629 -19.50441 -17.99875 -17.72968 -17.03604 -16.68230 -16.47607 -16.24846 -16.02169 -15.72262 -15.41567 -15.23933 -15.05223 -14.88022 -14.85921 -14.60227 -14.42552 -14.04410 -13.89811 -13.61068 -13.50685 -13.39038 -13.26304 -13.16860 -13.00140 -12.67643 -12.63801 -12.55151 -12.47867 -12.39474 -12.34346 -12.11365 -11.89290 -11.60020 -11.53463 -11.30113 -11.23119 -10.54869 -10.25226 -10.21051 -9.98179 -9.77116 -9.18093 -8.45529 -5.93940 0.47269 1.36893 1.41926 1.56096 2.06978 2.24625 2.32476 2.38567 2.80089 3.21341 3.39308 3.63421 3.83789 3.86842 3.90479 3.96838 4.17324 4.26726 4.32830 4.37251 4.38472 4.40686 4.47786 4.50542 4.55407 4.61180 4.65935 4.71975 4.74442 4.82233 4.84188 4.88917 4.93215 4.96237 5.04372 5.06051 5.09662 5.19041 5.20688 5.30656 5.31381 5.42166 5.47597 5.57035 5.62405 5.68210 5.91980 6.11438 6.26921 6.62259 6.70122 7.14546 7.37708 7.58237 8.14125 8.72172 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.035904 B = 0.001799 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.672538 B =15564.077341 C =15976.231908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.032 4.032 3 C -0.125 4.125 4 C -0.247 4.247 5 C 0.537 3.463 6 O -0.581 6.581 7 N -0.711 5.711 8 C 0.159 3.841 9 H 0.069 0.931 10 C -0.160 4.160 11 C -0.079 4.079 12 H 0.087 0.913 13 C -0.104 4.104 14 C -0.106 4.106 15 C 0.052 3.948 16 N -0.528 5.528 17 C 0.057 3.943 18 C 0.443 3.557 19 O -0.612 6.612 20 N -0.576 5.576 21 C -0.331 4.331 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.271 1.271 29 C 0.062 3.938 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.151 0.849 37 H 0.412 0.588 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.025 0.975 47 H 0.062 0.938 48 H 0.111 0.889 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.036 0.964 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 29.170 -4.001 29.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.034 4.034 3 C -0.181 4.181 4 C -0.268 4.268 5 C 0.329 3.671 6 O -0.464 6.464 7 N -0.362 5.362 8 C 0.053 3.947 9 H 0.087 0.913 10 C -0.218 4.218 11 C -0.098 4.098 12 H 0.105 0.895 13 C -0.142 4.142 14 C -0.144 4.144 15 C -0.076 4.076 16 N -0.253 5.253 17 C -0.074 4.074 18 C 0.230 3.770 19 O -0.498 6.498 20 N -0.213 5.213 21 C -0.460 4.460 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.196 1.196 29 C -0.066 4.066 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.169 0.831 37 H 0.248 0.752 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.044 0.956 47 H 0.080 0.920 48 H 0.129 0.871 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.054 0.946 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.869 29.141 -4.049 29.434 hybrid contribution -0.428 -1.426 0.576 1.596 sum -1.297 27.715 -3.473 27.962 Atomic orbital electron populations 1.20972 0.91986 1.01610 1.02545 1.22860 0.96416 0.95837 0.88330 1.21078 1.00336 0.92763 1.03900 1.22514 1.01202 0.90828 1.12244 1.19034 0.87168 0.85349 0.75563 1.90766 1.15405 1.88245 1.51972 1.45867 1.10791 1.04779 1.74740 1.20721 0.94743 0.82482 0.96713 0.91272 1.22181 1.02061 1.01720 0.95874 1.21315 0.98968 0.92411 0.97094 0.89474 1.21562 0.99752 0.98066 0.94818 1.21479 0.98642 0.93030 1.01204 1.22170 0.98397 0.98983 0.88057 1.61437 1.44634 1.00469 1.18730 1.21719 0.94019 0.88458 1.03241 1.20741 0.89525 0.83789 0.82936 1.90461 1.23141 1.82459 1.53690 1.41946 1.14428 1.04901 1.60062 1.19694 0.95783 0.86784 1.43748 0.90284 1.26030 0.98618 0.99805 0.96889 1.69679 1.18467 1.19958 1.48178 0.84872 0.77825 0.77453 0.78184 1.19779 1.19709 1.19642 1.22207 0.93626 0.90520 1.00243 0.91910 0.91092 0.91874 0.89161 0.90115 0.89887 0.83117 0.75163 0.90801 0.93547 0.91499 0.90026 0.92641 0.92009 0.90774 0.92215 0.95648 0.92001 0.87148 0.77119 0.91382 0.94598 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 8.33 71.24 0.59 -1.27 16 2 C -0.03 -0.42 6.11 -17.61 -0.11 -0.53 16 3 C -0.12 -0.78 9.98 71.24 0.71 -0.07 16 4 C -0.25 -3.42 9.63 23.43 0.23 -3.20 16 5 C 0.54 10.60 7.69 86.57 0.67 11.26 16 6 O -0.58 -15.63 12.74 -4.09 -0.05 -15.68 16 7 N -0.71 -11.37 4.42 -446.13 -1.97 -13.34 16 8 C 0.16 2.95 2.15 44.99 0.10 3.05 16 9 H 0.07 1.58 7.58 -2.38 -0.02 1.56 16 10 C -0.16 -2.90 9.13 71.98 0.66 -2.25 16 11 C -0.08 -1.55 1.98 -10.74 -0.02 -1.57 16 12 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 13 C -0.10 -2.07 5.09 30.68 0.16 -1.91 16 14 C -0.11 -2.69 6.09 30.65 0.19 -2.50 16 15 C 0.05 1.69 5.11 86.33 0.44 2.13 16 16 N -0.53 -17.04 4.39 -900.94 -3.96 -20.99 16 17 C 0.06 2.01 5.45 85.56 0.47 2.47 16 18 C 0.44 21.25 7.46 87.65 0.65 21.90 16 19 O -0.61 -33.71 13.92 -3.08 -0.04 -33.76 16 20 N -0.58 -29.84 5.29 -306.98 -1.62 -31.46 16 21 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 24 N -0.92 -50.13 13.05 21.66 0.28 -49.84 16 25 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 29 C 0.06 1.47 4.37 86.33 0.38 1.85 16 30 H 0.06 1.28 7.22 -2.39 -0.02 1.26 16 31 H 0.07 0.82 7.94 -2.39 -0.02 0.80 16 32 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 33 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.08 0.39 8.05 -2.39 -0.02 0.37 16 35 H 0.08 0.35 8.07 -2.39 -0.02 0.33 16 36 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 37 H 0.41 4.55 8.39 -92.70 -0.78 3.77 16 38 H 0.07 1.27 6.45 -2.39 -0.02 1.25 16 39 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 41 H 0.08 1.30 7.54 -2.39 -0.02 1.28 16 42 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.06 2.48 5.80 -2.39 -0.01 2.46 16 46 H 0.03 0.78 8.14 -2.39 -0.02 0.77 16 47 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 48 H 0.11 3.41 7.98 -2.39 -0.02 3.39 16 49 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 50 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 51 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.09 1.94 6.35 -2.38 -0.02 1.93 16 Total: -1.00 -71.84 409.87 0.46 -71.39 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: -0.59 Total: 37.41 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 6.38 Total: 11.01 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -7.27 Total: -115.64 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -0.09 Total: -49.44 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -71.84 0.46 -71.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690492903.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.505 kcal (2) G-P(sol) polarization free energy of solvation -71.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds