Wall clock time and date at job start Tue Mar 31 2020 20:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47359 * 2 1 4 4 N 1.46504 * 109.47205 * 239.99755 * 2 1 3 5 5 C 1.36935 * 119.99807 * 85.00425 * 4 2 1 6 6 H 1.08001 * 120.00018 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99992 * 180.02562 * 5 4 2 8 8 N 1.31623 * 119.99618 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00100 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47242 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47468 * 119.99828 * 9 7 5 12 12 H 1.48498 * 109.47268 * 239.99844 * 9 7 5 13 13 C 1.53003 * 109.47016 * 119.99982 * 2 1 3 14 14 H 1.08993 * 109.49640 * 60.06262 * 13 2 1 15 15 C 1.53045 * 109.49562 * 299.99817 * 13 2 1 16 16 C 1.53039 * 109.53694 * 178.68194 * 15 13 2 17 17 C 1.53196 * 109.33748 * 61.35198 * 16 15 13 18 18 N 1.46931 * 108.77131 * 305.41286 * 17 16 15 19 19 C 1.34773 * 120.60493 * 233.53550 * 18 17 16 20 20 O 1.21287 * 120.00452 * 180.02562 * 19 18 17 21 21 C 1.50706 * 120.00032 * 0.02562 * 19 18 17 22 22 N 1.46500 * 109.47114 * 179.97438 * 21 19 18 23 23 C 1.46505 * 120.00158 * 270.00188 * 22 21 19 24 24 C 1.34776 * 120.00093 * 89.99945 * 22 21 19 25 25 O 1.21287 * 119.99795 * 359.97438 * 24 22 21 26 26 C 1.50695 * 120.00333 * 179.97438 * 24 22 21 27 27 C 1.52998 * 117.49853 * 248.74998 * 26 24 22 28 28 C 1.52998 * 117.50074 * 180.09107 * 26 24 22 29 29 C 1.46928 * 118.76737 * 53.55408 * 18 17 16 30 30 H 1.09004 * 109.46733 * 60.00298 * 1 2 3 31 31 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47197 * 300.00521 * 1 2 3 33 33 H 0.96999 * 119.99837 * 264.99730 * 4 2 1 34 34 H 0.97003 * 119.99574 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.45732 * 58.66499 * 15 13 2 36 36 H 1.08998 * 109.45082 * 298.69655 * 15 13 2 37 37 H 1.09002 * 109.49756 * 181.31922 * 16 15 13 38 38 H 1.09000 * 109.49883 * 301.38665 * 16 15 13 39 39 H 1.08996 * 109.58760 * 65.17188 * 17 16 15 40 40 H 1.09001 * 109.58519 * 185.59185 * 17 16 15 41 41 H 1.08994 * 109.46960 * 300.00074 * 21 19 18 42 42 H 1.08998 * 109.46748 * 60.00294 * 21 19 18 43 43 H 1.08991 * 109.47220 * 89.99797 * 23 22 21 44 44 H 1.08999 * 109.46870 * 210.00256 * 23 22 21 45 45 H 1.09002 * 109.46593 * 330.00113 * 23 22 21 46 46 H 1.08998 * 115.54741 * 34.41716 * 26 24 22 47 47 H 1.09001 * 117.49971 * 359.97438 * 27 26 24 48 48 H 1.09004 * 117.50204 * 145.02129 * 27 26 24 49 49 H 1.09003 * 117.49860 * 214.98083 * 28 26 24 50 50 H 1.08992 * 117.50179 * 359.97338 * 28 26 24 51 51 H 1.08997 * 109.58597 * 186.62384 * 29 18 17 52 52 H 1.09004 * 109.58075 * 66.20134 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4243 7 6 2.6114 -0.6621 -3.5092 8 7 2.9244 -1.9392 -3.4501 9 14 2.7893 0.2696 -5.1185 10 1 2.3756 1.6821 -4.9210 11 1 4.2060 0.2266 -5.5615 12 1 1.9282 -0.3590 -6.1522 13 6 2.0400 -0.7213 1.2493 14 1 1.6778 -1.7493 1.2491 15 6 1.5301 -0.0002 2.4992 16 6 2.0125 -0.7398 3.7492 17 6 3.5441 -0.7375 3.7807 18 7 4.0438 -1.2970 2.5172 19 6 4.9189 -2.3219 2.5192 20 8 5.3247 -2.7750 1.4699 21 6 5.3935 -2.9050 3.8254 22 7 6.3314 -3.9987 3.5598 23 6 5.8353 -5.3690 3.4100 24 6 7.6506 -3.7442 3.4533 25 8 8.0613 -2.6097 3.5768 26 6 8.6155 -4.8692 3.1807 27 6 9.5780 -5.2620 4.3033 28 6 10.1002 -4.5160 3.0729 29 6 3.5719 -0.7181 1.2519 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.2491 -1.6318 -1.1525 34 1 3.2477 -2.3964 -4.2421 35 1 0.4404 0.0205 2.4874 36 1 1.9127 1.0204 2.5109 37 1 1.6296 -0.2392 4.6386 38 1 1.6506 -1.7677 3.7261 39 1 3.9057 0.2842 3.8957 40 1 3.8934 -1.3469 4.6142 41 1 5.8927 -2.1313 4.4086 42 1 4.5393 -3.2871 4.3843 43 1 5.6017 -5.5583 2.3624 44 1 6.5995 -6.0706 3.7444 45 1 4.9357 -5.4975 4.0118 46 1 8.2396 -5.6656 2.5383 47 1 9.5136 -4.7064 5.2388 48 1 9.8357 -6.3168 4.3992 49 1 10.7013 -5.0803 2.3598 50 1 10.3792 -3.4699 3.1987 51 1 3.9400 -1.3148 0.4174 52 1 3.9354 0.3055 1.1605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698928670.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:19 Heat of formation + Delta-G solvation = -28.739931 kcal Electronic energy + Delta-G solvation = -30499.696438 eV Core-core repulsion = 26500.518063 eV Total energy + Delta-G solvation = -3999.178375 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.60392 -39.66855 -37.78464 -36.36745 -35.48807 -35.36576 -32.94513 -31.72466 -30.34596 -29.11611 -27.98451 -26.76511 -25.32072 -24.27619 -23.38596 -22.81509 -22.65294 -21.10475 -19.60969 -19.35867 -18.69721 -17.65448 -17.40429 -16.96993 -16.46419 -15.59050 -15.34282 -15.17041 -14.83354 -14.58408 -14.37148 -14.15011 -13.96518 -13.70694 -13.28157 -13.12455 -12.99251 -12.90767 -12.80804 -12.73565 -12.46210 -12.30666 -12.00619 -11.92863 -11.78361 -11.31833 -11.09093 -10.97397 -10.86033 -10.82902 -10.72271 -10.68473 -10.56223 -10.22397 -10.10614 -9.96623 -9.91196 -9.73058 -9.51505 -8.86059 -8.73718 -8.38066 -6.88018 -5.67994 -2.97056 2.29309 2.68221 2.80761 3.25079 3.48383 3.53463 3.56111 3.64218 4.25751 4.52279 4.54952 4.63663 4.64550 4.73964 4.80197 4.90070 4.92736 4.99994 5.03725 5.16779 5.26942 5.29162 5.30482 5.39774 5.44398 5.53187 5.60907 5.63858 5.69143 5.72714 5.81441 5.83129 5.89762 5.95220 6.03744 6.13647 6.16706 6.22379 6.25447 6.46937 6.52040 6.56587 6.76309 6.80474 6.95345 7.13606 7.14319 7.59637 7.77386 8.03038 8.39545 8.49570 9.60790 10.18716 10.53014 11.54314 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010727 B = 0.003112 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.552742 B = 8994.037762 C =10935.047296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.046 0.954 4 N -0.724 5.724 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.293 1.293 13 C -0.102 4.102 14 H 0.068 0.932 15 C -0.115 4.115 16 C -0.133 4.133 17 C 0.106 3.894 18 N -0.611 5.611 19 C 0.493 3.507 20 O -0.520 6.520 21 C 0.099 3.901 22 N -0.597 5.597 23 C 0.079 3.921 24 C 0.551 3.449 25 O -0.538 6.538 26 C -0.191 4.191 27 C -0.154 4.154 28 C -0.147 4.147 29 C 0.123 3.877 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.038 0.962 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.126 0.874 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.108 0.892 51 H 0.106 0.894 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.687 -6.115 23.418 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.069 3.931 3 H 0.064 0.936 4 N -0.365 5.365 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.220 1.220 13 C -0.122 4.122 14 H 0.087 0.913 15 C -0.153 4.153 16 C -0.171 4.171 17 C -0.017 4.017 18 N -0.346 5.346 19 C 0.279 3.721 20 O -0.395 6.395 21 C -0.028 4.028 22 N -0.329 5.329 23 C -0.063 4.063 24 C 0.340 3.660 25 O -0.414 6.414 26 C -0.212 4.212 27 C -0.191 4.191 28 C -0.185 4.185 29 C 0.002 3.998 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.144 0.856 47 H 0.116 0.884 48 H 0.122 0.878 49 H 0.122 0.878 50 H 0.126 0.874 51 H 0.124 0.876 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.156 -5.649 22.762 24.013 hybrid contribution -0.195 0.111 -1.078 1.101 sum 4.961 -5.538 21.685 22.924 Atomic orbital electron populations 1.22477 0.99335 1.00745 0.99859 1.20178 0.91798 0.95276 0.85839 0.93558 1.42453 1.78058 1.10733 1.05295 1.19235 1.36521 0.93780 0.87304 0.91260 1.24737 1.02247 0.95946 0.97994 1.69683 1.50773 1.08612 1.28646 0.86168 0.77290 0.78758 0.84281 1.20638 1.21935 1.22000 1.21750 0.94760 1.00364 0.95293 0.91307 1.21628 1.01013 0.99113 0.93556 1.21921 0.94825 1.01529 0.98870 1.21736 0.94795 0.99409 0.85775 1.48210 1.44466 1.34122 1.07817 1.21058 0.79180 0.80083 0.91809 1.90770 1.55664 1.59873 1.33156 1.21368 0.94091 0.91720 0.95582 1.47283 1.05832 1.08108 1.71717 1.21878 1.00180 0.81523 1.02765 1.19650 0.81980 0.89131 0.75243 1.90687 1.77745 1.22961 1.50050 1.22180 0.92264 1.00867 1.05890 1.22947 1.01202 1.01542 0.93410 1.22974 0.92986 1.02589 0.99906 1.21679 0.93699 0.98921 0.85502 0.92907 0.93655 0.94295 0.78227 0.93637 0.91204 0.91853 0.90968 0.91627 0.91255 0.90483 0.87182 0.87694 0.91714 0.90524 0.90999 0.85581 0.88355 0.87780 0.87804 0.87405 0.87624 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.14 37.16 0.34 -2.59 16 2 C 0.18 3.53 2.47 -67.93 -0.17 3.36 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 N -0.72 -18.33 4.52 -53.42 -0.24 -18.57 16 5 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 6 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -29.05 13.06 55.49 0.72 -28.32 16 9 Si 0.90 23.09 29.55 -169.99 -5.02 18.07 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 12 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 13 C -0.10 -1.66 1.97 -90.50 -0.18 -1.84 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 15 C -0.12 -1.39 4.85 -26.69 -0.13 -1.52 16 16 C -0.13 -1.27 6.08 -26.61 -0.16 -1.43 16 17 C 0.11 1.07 6.34 -3.71 -0.02 1.05 16 18 N -0.61 -9.06 2.97 -172.76 -0.51 -9.57 16 19 C 0.49 8.06 7.77 -10.98 -0.09 7.97 16 20 O -0.52 -11.22 15.84 5.55 0.09 -11.13 16 21 C 0.10 1.16 4.28 -5.19 -0.02 1.13 16 22 N -0.60 -7.24 2.36 -182.95 -0.43 -7.68 16 23 C 0.08 0.69 10.05 59.85 0.60 1.29 16 24 C 0.55 7.67 7.46 -10.99 -0.08 7.59 16 25 O -0.54 -9.41 15.84 5.55 0.09 -9.32 16 26 C -0.19 -1.98 4.79 -91.78 -0.44 -2.42 16 27 C -0.15 -1.18 10.24 -26.70 -0.27 -1.45 16 28 C -0.15 -1.41 10.05 -26.70 -0.27 -1.68 16 29 C 0.12 2.22 5.47 -3.71 -0.02 2.20 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.56 6.40 -51.93 -0.33 0.23 16 33 H 0.38 10.58 7.62 -40.82 -0.31 10.27 16 34 H 0.25 7.70 8.31 -40.82 -0.34 7.37 16 35 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.57 5.93 -51.93 -0.31 0.26 16 41 H 0.11 1.25 7.22 -51.93 -0.38 0.87 16 42 H 0.11 0.83 7.44 -51.93 -0.39 0.44 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.48 6.64 -51.93 -0.34 0.14 16 45 H 0.07 0.46 7.89 -51.93 -0.41 0.05 16 46 H 0.13 1.13 7.27 -51.93 -0.38 0.75 16 47 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.11 1.21 7.67 -51.93 -0.40 0.82 16 51 H 0.11 2.42 6.52 -51.93 -0.34 2.08 16 52 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 410.75 15.07 6.19 6.19 Total: -1.00 -37.25 410.75 -9.23 -46.48 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -8.95 Total: 9.49 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -1.16 Total: 4.36 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -0.46 Total: -64.14 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.18 Total: -20.45 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -37.25 -9.23 -46.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698928670.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.738 kcal (2) G-P(sol) polarization free energy of solvation -37.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds