Wall clock time and date at job start Tue Mar 31 2020 20:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47359 * 2 1 4 4 N 1.46504 * 109.47205 * 239.99755 * 2 1 3 5 5 C 1.36935 * 119.99807 * 85.00425 * 4 2 1 6 6 H 1.08001 * 120.00018 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99992 * 180.02562 * 5 4 2 8 8 N 1.31623 * 119.99618 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00100 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47242 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47468 * 119.99828 * 9 7 5 12 12 H 1.48498 * 109.47268 * 239.99844 * 9 7 5 13 13 C 1.53003 * 109.47016 * 119.99982 * 2 1 3 14 14 H 1.08993 * 109.49640 * 60.06262 * 13 2 1 15 15 C 1.53045 * 109.49562 * 299.99817 * 13 2 1 16 16 C 1.53039 * 109.53694 * 178.68194 * 15 13 2 17 17 C 1.53196 * 109.33748 * 61.35198 * 16 15 13 18 18 N 1.46931 * 108.77131 * 305.41286 * 17 16 15 19 19 C 1.34773 * 120.60493 * 233.53550 * 18 17 16 20 20 O 1.21287 * 120.00452 * 180.02562 * 19 18 17 21 21 C 1.50706 * 120.00032 * 0.02562 * 19 18 17 22 22 N 1.46500 * 109.47114 * 179.97438 * 21 19 18 23 23 C 1.46505 * 120.00158 * 270.00188 * 22 21 19 24 24 C 1.34776 * 120.00093 * 89.99945 * 22 21 19 25 25 O 1.21287 * 119.99795 * 359.97438 * 24 22 21 26 26 C 1.50695 * 120.00333 * 179.97438 * 24 22 21 27 27 C 1.52998 * 117.49853 * 248.74998 * 26 24 22 28 28 C 1.52998 * 117.50074 * 180.09107 * 26 24 22 29 29 C 1.46928 * 118.76737 * 53.55408 * 18 17 16 30 30 H 1.09004 * 109.46733 * 60.00298 * 1 2 3 31 31 H 1.08998 * 109.47359 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47197 * 300.00521 * 1 2 3 33 33 H 0.96999 * 119.99837 * 264.99730 * 4 2 1 34 34 H 0.97003 * 119.99574 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.45732 * 58.66499 * 15 13 2 36 36 H 1.08998 * 109.45082 * 298.69655 * 15 13 2 37 37 H 1.09002 * 109.49756 * 181.31922 * 16 15 13 38 38 H 1.09000 * 109.49883 * 301.38665 * 16 15 13 39 39 H 1.08996 * 109.58760 * 65.17188 * 17 16 15 40 40 H 1.09001 * 109.58519 * 185.59185 * 17 16 15 41 41 H 1.08994 * 109.46960 * 300.00074 * 21 19 18 42 42 H 1.08998 * 109.46748 * 60.00294 * 21 19 18 43 43 H 1.08991 * 109.47220 * 89.99797 * 23 22 21 44 44 H 1.08999 * 109.46870 * 210.00256 * 23 22 21 45 45 H 1.09002 * 109.46593 * 330.00113 * 23 22 21 46 46 H 1.08998 * 115.54741 * 34.41716 * 26 24 22 47 47 H 1.09001 * 117.49971 * 359.97438 * 27 26 24 48 48 H 1.09004 * 117.50204 * 145.02129 * 27 26 24 49 49 H 1.09003 * 117.49860 * 214.98083 * 28 26 24 50 50 H 1.08992 * 117.50179 * 359.97338 * 28 26 24 51 51 H 1.08997 * 109.58597 * 186.62384 * 29 18 17 52 52 H 1.09004 * 109.58075 * 66.20134 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4243 7 6 2.6114 -0.6621 -3.5092 8 7 2.9244 -1.9392 -3.4501 9 14 2.7893 0.2696 -5.1185 10 1 2.3756 1.6821 -4.9210 11 1 4.2060 0.2266 -5.5615 12 1 1.9282 -0.3590 -6.1522 13 6 2.0400 -0.7213 1.2493 14 1 1.6778 -1.7493 1.2491 15 6 1.5301 -0.0002 2.4992 16 6 2.0125 -0.7398 3.7492 17 6 3.5441 -0.7375 3.7807 18 7 4.0438 -1.2970 2.5172 19 6 4.9189 -2.3219 2.5192 20 8 5.3247 -2.7750 1.4699 21 6 5.3935 -2.9050 3.8254 22 7 6.3314 -3.9987 3.5598 23 6 5.8353 -5.3690 3.4100 24 6 7.6506 -3.7442 3.4533 25 8 8.0613 -2.6097 3.5768 26 6 8.6155 -4.8692 3.1807 27 6 9.5780 -5.2620 4.3033 28 6 10.1002 -4.5160 3.0729 29 6 3.5719 -0.7181 1.2519 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.2491 -1.6318 -1.1525 34 1 3.2477 -2.3964 -4.2421 35 1 0.4404 0.0205 2.4874 36 1 1.9127 1.0204 2.5109 37 1 1.6296 -0.2392 4.6386 38 1 1.6506 -1.7677 3.7261 39 1 3.9057 0.2842 3.8957 40 1 3.8934 -1.3469 4.6142 41 1 5.8927 -2.1313 4.4086 42 1 4.5393 -3.2871 4.3843 43 1 5.6017 -5.5583 2.3624 44 1 6.5995 -6.0706 3.7444 45 1 4.9357 -5.4975 4.0118 46 1 8.2396 -5.6656 2.5383 47 1 9.5136 -4.7064 5.2388 48 1 9.8357 -6.3168 4.3992 49 1 10.7013 -5.0803 2.3598 50 1 10.3792 -3.4699 3.1987 51 1 3.9400 -1.3148 0.4174 52 1 3.9354 0.3055 1.1605 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698928670.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:18 Heat of formation + Delta-G solvation = -54.343233 kcal Electronic energy + Delta-G solvation = -30500.806681 eV Core-core repulsion = 26500.518063 eV Total energy + Delta-G solvation = -4000.288617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.69842 -40.78495 -39.10578 -37.22164 -36.96106 -36.47311 -34.68401 -33.13718 -31.73679 -30.54705 -29.38620 -27.60774 -26.58583 -25.82065 -24.75173 -23.94974 -23.33817 -22.33944 -21.10633 -20.40950 -19.74474 -19.18523 -18.55473 -18.40341 -17.52246 -16.82426 -16.64654 -16.47206 -16.15665 -15.61470 -15.55395 -15.50057 -15.32857 -15.01717 -14.71431 -14.28912 -14.19028 -14.02107 -13.90602 -13.85485 -13.56833 -13.41760 -13.28598 -13.03954 -12.90509 -12.83678 -12.55692 -12.45568 -12.36304 -12.12689 -12.00253 -11.83848 -11.68013 -11.59147 -11.45342 -11.40577 -11.22389 -11.07424 -10.98259 -10.95335 -9.77871 -9.63258 -9.00599 -7.94351 -5.22555 1.29078 1.41819 1.43969 1.53302 1.56817 1.79185 2.15605 2.53963 2.87295 3.39185 3.46387 3.49696 3.74005 3.79060 3.84929 3.95242 3.95927 4.05643 4.13007 4.18421 4.21240 4.25589 4.28574 4.32782 4.43413 4.59696 4.63144 4.63845 4.71161 4.77646 4.85327 4.86664 4.91472 4.92908 4.93869 4.99842 5.03320 5.06326 5.17429 5.19822 5.26758 5.31306 5.38538 5.48635 5.54184 5.55544 5.64107 6.21791 6.27096 6.41857 7.02160 7.16981 7.32054 8.10483 8.31809 9.29438 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010727 B = 0.003112 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.552742 B = 8994.037762 C =10935.047296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.170 3.830 3 H 0.043 0.957 4 N -0.737 5.737 5 C -0.231 4.231 6 H 0.077 0.923 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.970 3.030 10 H -0.263 1.263 11 H -0.299 1.299 12 H -0.292 1.292 13 C -0.086 4.086 14 H 0.053 0.947 15 C -0.111 4.111 16 C -0.125 4.125 17 C 0.096 3.904 18 N -0.608 5.608 19 C 0.481 3.519 20 O -0.589 6.589 21 C 0.105 3.895 22 N -0.599 5.599 23 C 0.075 3.925 24 C 0.537 3.463 25 O -0.587 6.587 26 C -0.208 4.208 27 C -0.119 4.119 28 C -0.163 4.163 29 C 0.131 3.869 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.367 0.633 34 H 0.247 0.753 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.155 0.845 43 H 0.038 0.962 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.140 0.860 47 H 0.097 0.903 48 H 0.138 0.862 49 H 0.122 0.878 50 H 0.082 0.918 51 H 0.044 0.956 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.399 -6.013 27.121 27.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.062 3.938 3 H 0.061 0.939 4 N -0.377 5.377 5 C -0.363 4.363 6 H 0.095 0.905 7 C -0.274 4.274 8 N -0.623 5.623 9 Si 0.799 3.201 10 H -0.187 1.187 11 H -0.227 1.227 12 H -0.220 1.220 13 C -0.106 4.106 14 H 0.072 0.928 15 C -0.148 4.148 16 C -0.163 4.163 17 C -0.025 4.025 18 N -0.341 5.341 19 C 0.269 3.731 20 O -0.468 6.468 21 C -0.022 4.022 22 N -0.330 5.330 23 C -0.067 4.067 24 C 0.328 3.672 25 O -0.468 6.468 26 C -0.229 4.229 27 C -0.156 4.156 28 C -0.200 4.200 29 C 0.008 3.992 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.198 0.802 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.131 0.869 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.172 0.828 43 H 0.057 0.943 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.158 0.842 47 H 0.115 0.885 48 H 0.156 0.844 49 H 0.140 0.860 50 H 0.100 0.900 51 H 0.063 0.937 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.797 -5.506 26.550 27.379 hybrid contribution 0.189 0.144 -2.167 2.180 sum 3.985 -5.362 24.382 25.281 Atomic orbital electron populations 1.22302 0.97120 1.00684 1.01044 1.20506 0.93201 0.94844 0.85263 0.93915 1.42690 1.78387 1.10119 1.06520 1.19643 1.34306 0.94068 0.88265 0.90549 1.25576 1.03347 0.96874 1.01615 1.69866 1.52940 1.10405 1.29097 0.85111 0.76534 0.78368 0.80043 1.18673 1.22698 1.21971 1.21573 0.93145 0.99722 0.96140 0.92819 1.21636 1.01826 0.99174 0.92213 1.21918 0.93833 1.01754 0.98770 1.22190 0.95598 1.00520 0.84159 1.48335 1.43868 1.33541 1.08386 1.22090 0.78428 0.79779 0.92800 1.90741 1.58088 1.62101 1.35912 1.21546 0.95625 0.92145 0.92864 1.47518 1.05502 1.09456 1.70489 1.22101 1.02378 0.80279 1.01914 1.20372 0.83102 0.89384 0.74379 1.90647 1.78741 1.24949 1.52457 1.22253 0.91899 1.00406 1.08329 1.23069 0.97557 1.02993 0.92029 1.23033 0.92807 1.01929 1.02277 1.21274 0.95017 0.97181 0.85746 0.94812 0.94312 0.89934 0.80154 0.94396 0.89687 0.91097 0.86915 0.91437 0.90242 0.86779 0.86496 0.82804 0.94274 0.87792 0.88007 0.84245 0.88496 0.84408 0.86005 0.89969 0.93734 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.23 9.14 71.98 0.66 -4.58 16 2 C 0.17 6.76 2.47 44.99 0.11 6.87 16 3 H 0.04 1.73 8.08 -2.39 -0.02 1.71 16 4 N -0.74 -39.10 4.52 -322.93 -1.46 -40.56 16 5 C -0.23 -13.41 9.93 84.03 0.83 -12.58 16 6 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 7 C -0.08 -5.02 5.50 84.86 0.47 -4.55 16 8 N -0.97 -63.91 13.06 21.65 0.28 -63.63 16 9 Si 0.97 48.98 29.55 68.60 2.03 51.00 16 10 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.30 -15.33 7.11 99.48 0.71 -14.63 16 12 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 13 C -0.09 -2.80 1.97 -10.71 -0.02 -2.82 16 14 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 15 C -0.11 -2.32 4.85 30.62 0.15 -2.17 16 16 C -0.12 -1.80 6.08 30.67 0.19 -1.61 16 17 C 0.10 1.62 6.34 86.36 0.55 2.17 16 18 N -0.61 -17.97 2.97 -818.87 -2.43 -20.41 16 19 C 0.48 16.13 7.77 87.66 0.68 16.81 16 20 O -0.59 -27.43 15.84 -3.05 -0.05 -27.48 16 21 C 0.10 2.28 4.28 85.63 0.37 2.65 16 22 N -0.60 -14.13 2.36 -851.13 -2.01 -16.14 16 23 C 0.07 1.19 10.05 127.77 1.28 2.47 16 24 C 0.54 15.17 7.46 87.66 0.65 15.83 16 25 O -0.59 -21.45 15.84 -3.05 -0.05 -21.50 16 26 C -0.21 -4.20 4.79 -11.54 -0.06 -4.26 16 27 C -0.12 -1.58 10.24 30.62 0.31 -1.27 16 28 C -0.16 -3.11 10.05 30.62 0.31 -2.80 16 29 C 0.13 4.97 5.47 86.36 0.47 5.44 16 30 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 2.12 6.40 -2.39 -0.02 2.10 16 33 H 0.37 21.67 7.62 -92.71 -0.71 20.97 16 34 H 0.25 15.82 8.31 -92.71 -0.77 15.05 16 35 H 0.08 1.58 6.36 -2.39 -0.02 1.56 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.11 1.12 5.93 -2.39 -0.01 1.10 16 41 H 0.12 2.45 7.22 -2.39 -0.02 2.43 16 42 H 0.15 1.78 7.44 -2.39 -0.02 1.77 16 43 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.10 1.06 6.64 -2.39 -0.02 1.04 16 45 H 0.10 0.99 7.89 -2.39 -0.02 0.97 16 46 H 0.14 2.38 7.27 -2.39 -0.02 2.36 16 47 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.08 1.99 7.67 -2.39 -0.02 1.97 16 51 H 0.04 2.24 6.52 -2.39 -0.02 2.23 16 52 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -91.38 410.75 3.47 -87.92 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: 0.20 Total: 35.21 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 6.96 Total: 15.60 kcal Atomic # 7 Polarization: -135.12 SS G_CDS: -5.62 Total: -140.74 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -0.10 Total: -48.98 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 2.03 Total: 51.00 kcal Total: -91.38 3.47 -87.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698928670.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.572 kcal (2) G-P(sol) polarization free energy of solvation -91.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds