Wall clock time and date at job start Tue Mar 31 2020 20:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47105 * 2 1 4 4 N 1.46499 * 109.46826 * 119.99928 * 2 1 3 5 5 C 1.36936 * 120.00102 * 274.99894 * 4 2 1 6 6 H 1.08000 * 119.99534 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00179 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99971 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00073 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47181 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47130 * 120.00003 * 9 7 5 12 12 H 1.48503 * 109.47001 * 239.99713 * 9 7 5 13 13 C 1.53000 * 109.46998 * 239.99829 * 2 1 3 14 14 H 1.08993 * 109.49572 * 184.93630 * 13 2 1 15 15 C 1.53035 * 109.52473 * 64.85432 * 13 2 1 16 16 C 1.53041 * 109.53928 * 178.66604 * 15 13 2 17 17 C 1.52758 * 109.38228 * 61.24299 * 16 15 13 18 18 N 1.46922 * 109.00798 * 305.58783 * 17 16 15 19 19 C 1.34777 * 120.63498 * 233.58440 * 18 17 16 20 20 O 1.21283 * 120.00401 * 179.71937 * 19 18 17 21 21 C 1.50709 * 119.99760 * 359.72012 * 19 18 17 22 22 N 1.46497 * 109.47273 * 179.97438 * 21 19 18 23 23 C 1.46496 * 120.00129 * 270.00327 * 22 21 19 24 24 C 1.34777 * 119.99525 * 89.99834 * 22 21 19 25 25 O 1.21283 * 120.00463 * 0.02562 * 24 22 21 26 26 C 1.50700 * 119.99675 * 179.72583 * 24 22 21 27 27 C 1.53002 * 117.49942 * 249.02519 * 26 24 22 28 28 C 1.53005 * 117.50073 * 180.36469 * 26 24 22 29 29 C 1.46928 * 118.73794 * 53.31011 * 18 17 16 30 30 H 1.09000 * 109.47608 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46986 * 300.00317 * 1 2 3 32 32 H 1.09005 * 109.47004 * 60.00001 * 1 2 3 33 33 H 0.97003 * 119.99808 * 94.99907 * 4 2 1 34 34 H 0.97003 * 120.00168 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46481 * 298.68768 * 15 13 2 36 36 H 1.08999 * 109.45926 * 58.64775 * 15 13 2 37 37 H 1.08999 * 109.49860 * 181.31686 * 16 15 13 38 38 H 1.08999 * 109.49890 * 301.38438 * 16 15 13 39 39 H 1.08998 * 109.51150 * 185.70961 * 17 16 15 40 40 H 1.08998 * 109.43459 * 65.42167 * 17 16 15 41 41 H 1.09000 * 109.46880 * 60.00029 * 21 19 18 42 42 H 1.09001 * 109.46663 * 299.99913 * 21 19 18 43 43 H 1.08997 * 109.47115 * 269.99822 * 23 22 21 44 44 H 1.08995 * 109.47364 * 30.00213 * 23 22 21 45 45 H 1.09002 * 109.47090 * 149.99764 * 23 22 21 46 46 H 1.09001 * 115.55204 * 34.69144 * 26 24 22 47 47 H 1.09008 * 117.49817 * 359.97438 * 27 26 24 48 48 H 1.09000 * 117.50215 * 145.01570 * 27 26 24 49 49 H 1.08994 * 117.50196 * 214.97848 * 28 26 24 50 50 H 1.09009 * 117.49229 * 359.97438 * 28 26 24 51 51 H 1.09000 * 109.58748 * 66.43454 * 29 18 17 52 52 H 1.09003 * 109.58676 * 186.71422 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8918 1.0403 2.4243 7 6 2.6122 -0.6617 3.5090 8 7 2.9251 -1.9388 3.4500 9 14 2.7912 0.2704 5.1180 10 1 2.3774 1.6828 4.9205 11 1 1.9309 -0.3580 6.1525 12 1 4.2083 0.2275 5.5598 13 6 2.0400 -0.7213 -1.2492 14 1 3.1263 -0.7987 -1.2065 15 6 1.6326 0.0662 -2.4966 16 6 2.1710 -0.6374 -3.7445 17 6 1.5671 -2.0374 -3.8376 18 7 1.8254 -2.7544 -2.5815 19 6 2.4193 -3.9642 -2.5909 20 8 2.6316 -4.5438 -1.5468 21 6 2.8195 -4.5970 -3.8988 22 7 3.4408 -5.8986 -3.6418 23 6 4.8881 -5.9914 -3.4352 24 6 2.6806 -7.0105 -3.5952 25 8 1.4824 -6.9337 -3.7666 26 6 3.3205 -8.3503 -3.3369 27 6 3.3470 -9.3548 -4.4908 28 6 2.4051 -9.5759 -3.3045 29 6 1.4294 -2.1248 -1.3143 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.2489 -1.6318 1.1526 34 1 3.2484 -2.3961 4.2420 35 1 0.5454 0.1221 -2.5519 36 1 2.0454 1.0734 -2.4410 37 1 1.9006 -0.0636 -4.6309 38 1 3.2563 -0.7151 -3.6786 39 1 2.0246 -2.5768 -4.6669 40 1 0.4920 -1.9586 -3.9989 41 1 3.5309 -3.9504 -4.4125 42 1 1.9357 -4.7325 -4.5223 43 1 5.3825 -6.1492 -4.3937 44 1 5.2512 -5.0666 -2.9870 45 1 5.1075 -6.8275 -2.7712 46 1 4.1733 -8.3410 -2.6582 47 1 2.9012 -9.0467 -5.4366 48 1 4.2170 -10.0065 -4.5709 49 1 2.6559 -10.3730 -2.6047 50 1 1.3400 -9.4130 -3.4696 51 1 0.3429 -2.0533 -1.2657 52 1 1.7939 -2.7232 -0.4794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698928673.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:28 Heat of formation + Delta-G solvation = -25.557117 kcal Electronic energy + Delta-G solvation = -30520.763767 eV Core-core repulsion = 26521.723410 eV Total energy + Delta-G solvation = -3999.040358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.64707 -39.74041 -37.87491 -36.38178 -35.49915 -35.39567 -32.95529 -31.87361 -30.22958 -29.14694 -27.71784 -26.78892 -25.38167 -24.51648 -23.52113 -23.09944 -22.67058 -21.18141 -19.73300 -18.92604 -18.56545 -17.71316 -17.47740 -16.98006 -16.48518 -15.61172 -15.41554 -15.17491 -14.79976 -14.65751 -14.52720 -14.18036 -13.89122 -13.73632 -13.44850 -13.18301 -13.12331 -12.88863 -12.86459 -12.65483 -12.44990 -12.42476 -12.01508 -11.86114 -11.79161 -11.50709 -11.12996 -10.98683 -10.84576 -10.84142 -10.73077 -10.59997 -10.41542 -10.20379 -10.19961 -9.98898 -9.93626 -9.77443 -9.50988 -8.86670 -8.77666 -8.39132 -6.89694 -5.68865 -2.98517 2.28186 2.65786 2.76494 3.20896 3.46769 3.51744 3.54514 3.62596 4.24816 4.48284 4.52971 4.62258 4.63381 4.72132 4.76985 4.87404 4.94776 4.99051 5.02060 5.14093 5.25618 5.28749 5.29911 5.38061 5.42917 5.46956 5.58633 5.62634 5.68543 5.70575 5.78771 5.85596 5.88773 5.89618 5.98322 6.09010 6.14046 6.16191 6.27645 6.39989 6.45091 6.61261 6.68112 6.80598 6.93473 7.12486 7.16483 7.54244 7.75944 8.01049 8.34571 8.48640 9.59524 10.18126 10.52154 11.53268 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011850 B = 0.002917 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.290784 B = 9595.780940 C =11236.875308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.180 3.820 3 H 0.049 0.951 4 N -0.725 5.725 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.103 4.103 14 H 0.073 0.927 15 C -0.114 4.114 16 C -0.134 4.134 17 C 0.107 3.893 18 N -0.610 5.610 19 C 0.493 3.507 20 O -0.521 6.521 21 C 0.099 3.901 22 N -0.597 5.597 23 C 0.082 3.918 24 C 0.551 3.449 25 O -0.538 6.538 26 C -0.192 4.192 27 C -0.152 4.152 28 C -0.148 4.148 29 C 0.116 3.884 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.385 0.615 34 H 0.254 0.746 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.127 0.873 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.107 0.893 51 H 0.070 0.930 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.373 -7.559 -23.448 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.070 3.930 3 H 0.067 0.933 4 N -0.367 5.367 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.577 5.577 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.220 1.220 13 C -0.123 4.123 14 H 0.091 0.909 15 C -0.152 4.152 16 C -0.172 4.172 17 C -0.016 4.016 18 N -0.345 5.345 19 C 0.279 3.721 20 O -0.396 6.396 21 C -0.028 4.028 22 N -0.329 5.329 23 C -0.060 4.060 24 C 0.340 3.660 25 O -0.415 6.415 26 C -0.213 4.213 27 C -0.190 4.190 28 C -0.185 4.185 29 C -0.005 4.005 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.219 0.781 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.145 0.855 47 H 0.116 0.884 48 H 0.122 0.878 49 H 0.122 0.878 50 H 0.126 0.874 51 H 0.088 0.912 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.882 -7.725 -22.823 24.168 hybrid contribution 0.311 0.425 1.100 1.220 sum 2.193 -7.301 -21.722 23.021 Atomic orbital electron populations 1.22581 0.99557 1.00913 0.99929 1.20172 0.91810 0.95234 0.85804 0.93348 1.42512 1.78091 1.10820 1.05321 1.19259 1.36455 0.93831 0.87386 0.91213 1.24755 1.02307 0.95951 0.98013 1.69692 1.50792 1.08581 1.28669 0.86158 0.77245 0.78744 0.84284 1.20637 1.21942 1.21974 1.21770 1.00883 0.94324 0.95288 0.90885 1.21604 1.01117 0.98930 0.93570 1.21850 1.01048 0.95389 0.98946 1.21645 1.00905 0.93241 0.85839 1.48187 1.60229 1.18058 1.08026 1.21069 0.77981 0.81263 0.91790 1.90765 1.53615 1.61626 1.33584 1.21357 1.00826 0.84983 0.95638 1.47300 1.08407 1.05658 1.71502 1.21845 0.79003 1.03956 1.01234 1.19646 0.86286 0.84760 0.75316 1.90684 1.14656 1.86598 1.49568 1.22209 1.04395 0.89294 1.05421 1.22939 1.02532 1.00206 0.93293 1.22979 0.98254 0.96840 1.00444 1.21834 0.99330 0.93733 0.85614 0.93225 0.92894 0.94321 0.78089 0.93593 0.91480 0.91615 0.90879 0.91595 0.90424 0.91230 0.87615 0.87111 0.92268 0.90779 0.90517 0.85495 0.88370 0.87776 0.87810 0.87416 0.91215 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 8.77 37.16 0.33 -2.73 16 2 C 0.18 3.56 2.67 -67.93 -0.18 3.38 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 N -0.73 -18.55 5.06 -53.43 -0.27 -18.82 16 5 C -0.24 -6.73 9.93 -15.06 -0.15 -6.88 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 8 N -0.93 -29.12 13.06 55.49 0.72 -28.40 16 9 Si 0.90 22.93 29.55 -169.99 -5.02 17.90 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 13 C -0.10 -1.68 2.27 -90.50 -0.21 -1.89 16 14 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 15 C -0.11 -1.38 4.89 -26.69 -0.13 -1.51 16 16 C -0.13 -1.27 6.06 -26.83 -0.16 -1.43 16 17 C 0.11 1.05 6.31 -3.94 -0.02 1.03 16 18 N -0.61 -8.79 2.98 -173.03 -0.52 -9.31 16 19 C 0.49 7.87 7.77 -10.98 -0.09 7.78 16 20 O -0.52 -10.96 15.84 5.55 0.09 -10.87 16 21 C 0.10 1.13 4.23 -5.19 -0.02 1.11 16 22 N -0.60 -7.13 2.36 -182.96 -0.43 -7.56 16 23 C 0.08 0.71 10.26 59.84 0.61 1.33 16 24 C 0.55 7.53 7.46 -10.98 -0.08 7.44 16 25 O -0.54 -9.23 15.84 5.55 0.09 -9.14 16 26 C -0.19 -1.95 5.28 -91.77 -0.48 -2.44 16 27 C -0.15 -1.15 10.24 -26.69 -0.27 -1.43 16 28 C -0.15 -1.38 10.05 -26.69 -0.27 -1.65 16 29 C 0.12 2.01 5.18 -3.71 -0.02 1.99 16 30 H 0.05 0.91 6.23 -51.93 -0.32 0.59 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.04 0.57 6.59 -51.93 -0.34 0.22 16 33 H 0.38 10.69 6.47 -40.82 -0.26 10.43 16 34 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.07 0.78 6.63 -51.93 -0.34 0.43 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.55 5.93 -51.93 -0.31 0.25 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.11 0.83 7.61 -51.93 -0.40 0.43 16 42 H 0.11 1.22 7.23 -51.93 -0.38 0.85 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 45 H 0.08 0.61 6.00 -51.93 -0.31 0.30 16 46 H 0.13 1.10 6.45 -51.93 -0.33 0.77 16 47 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 48 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.11 1.18 7.67 -51.92 -0.40 0.78 16 51 H 0.07 1.18 6.06 -51.93 -0.31 0.87 16 52 H 0.10 2.15 5.82 -51.93 -0.30 1.84 16 LS Contribution 405.30 15.07 6.11 6.11 Total: -1.00 -37.34 405.30 -9.11 -46.44 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -8.63 Total: 10.04 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -1.25 Total: 3.60 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: -0.49 Total: -64.08 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.18 Total: -20.01 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.34 -9.11 -46.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698928673.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.887 kcal (2) G-P(sol) polarization free energy of solvation -37.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds