Wall clock time and date at job start Tue Mar 31 2020 20:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47182 * 2 1 4 4 C 1.52996 * 109.46709 * 119.99944 * 2 1 3 5 5 C 1.53003 * 109.47006 * 184.99568 * 4 2 1 6 6 N 1.46895 * 109.47300 * 180.02562 * 5 4 2 7 7 C 1.46897 * 111.00087 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.47248 * 179.97438 * 7 6 5 9 9 O 1.21294 * 119.99743 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99780 * 179.97438 * 8 7 6 11 11 C 1.37104 * 119.99410 * 179.97438 * 10 8 7 12 12 H 1.07992 * 120.00404 * 0.02562 * 11 10 8 13 13 C 1.38954 * 119.99531 * 180.02562 * 11 10 8 14 14 N 1.31411 * 120.00495 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99825 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46988 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47160 * 119.99930 * 15 13 11 18 18 H 1.48494 * 109.46904 * 240.00261 * 15 13 11 19 19 N 1.46501 * 109.47101 * 239.99742 * 2 1 3 20 20 C 1.34774 * 120.00070 * 85.00268 * 19 2 1 21 21 O 1.21611 * 120.00064 * 359.97438 * 20 19 2 22 22 C 1.47097 * 120.00272 * 180.02562 * 20 19 2 23 23 C 1.31561 * 119.85556 * 179.97438 * 22 20 19 24 24 C 1.51412 * 120.29518 * 180.02562 * 23 22 20 25 25 C 1.53039 * 108.57137 * 288.41684 * 24 23 22 26 26 C 1.51779 * 110.81177 * 85.71265 * 25 24 23 27 27 C 1.51782 * 113.84160 * 293.05714 * 26 25 24 28 28 C 1.51455 * 119.88693 * 0.04060 * 22 20 19 29 29 H 1.08999 * 109.47361 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47300 * 300.00401 * 1 2 3 31 31 H 1.09002 * 109.47009 * 60.00141 * 1 2 3 32 32 H 1.09001 * 109.47521 * 304.99880 * 4 2 1 33 33 H 1.09004 * 109.47057 * 65.00148 * 4 2 1 34 34 H 1.09001 * 109.47236 * 300.00487 * 5 4 2 35 35 H 1.09004 * 109.46739 * 60.00385 * 5 4 2 36 36 H 1.00897 * 111.00150 * 56.04539 * 6 5 4 37 37 H 1.09001 * 109.46900 * 299.99429 * 7 6 5 38 38 H 1.09003 * 109.47631 * 59.99864 * 7 6 5 39 39 H 0.96997 * 120.00402 * 0.02562 * 10 8 7 40 40 H 0.96990 * 120.00316 * 179.97438 * 14 13 11 41 41 H 0.96999 * 120.00330 * 265.00442 * 19 2 1 42 42 H 1.08003 * 119.85222 * 0.04575 * 23 22 20 43 43 H 1.08998 * 109.62319 * 168.68679 * 24 23 22 44 44 H 1.09010 * 109.76974 * 48.22636 * 24 23 22 45 45 H 1.09000 * 109.20835 * 325.36465 * 25 24 23 46 46 H 1.08997 * 109.20684 * 206.05167 * 25 24 23 47 47 H 1.08997 * 108.61113 * 171.93101 * 26 25 24 48 48 H 1.09000 * 108.60928 * 54.18297 * 26 25 24 49 49 H 1.09002 * 109.21025 * 187.28294 * 27 26 25 50 50 H 1.08999 * 109.20670 * 306.64469 * 27 26 25 51 51 H 1.09005 * 109.66265 * 131.87083 * 28 22 20 52 52 H 1.09000 * 109.60208 * 11.30890 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5647 -0.6134 1.3137 6 7 4.0544 -1.3064 2.5128 7 6 5.5179 -1.2229 2.6083 8 6 5.9823 -1.9428 3.8482 9 8 5.1736 -2.4736 4.5800 10 7 7.2962 -1.9977 4.1433 11 6 7.7186 -2.6522 5.2715 12 1 6.9985 -3.1241 5.9236 13 6 9.0732 -2.7083 5.5760 14 7 9.9494 -2.1337 4.7830 15 14 9.6488 -3.6006 7.1129 16 1 8.4744 -4.1584 7.8305 17 1 10.5647 -4.7050 6.7303 18 1 10.3646 -2.6483 7.9993 19 7 2.0183 -0.6907 -1.1961 20 6 2.1471 -0.0184 -2.3571 21 8 1.8575 1.1615 -2.4119 22 6 2.6369 -0.7120 -3.5583 23 6 2.7610 -0.0530 -4.6902 24 6 3.2636 -0.7572 -5.9328 25 6 4.7573 -1.0424 -5.7609 26 6 4.9751 -2.3487 -5.0193 27 6 4.5173 -2.3165 -3.5725 28 6 2.9949 -2.1819 -3.4878 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6053 -0.2617 2.1370 33 1 1.7515 -1.7715 1.2056 34 1 3.9994 -1.0729 0.4260 35 1 3.8531 0.4369 1.3574 36 1 3.7450 -2.2666 2.5272 37 1 5.9663 -1.6862 1.7294 38 1 5.8196 -0.1768 2.6616 39 1 7.9429 -1.5736 3.5578 40 1 10.8948 -2.1726 4.9957 41 1 2.2490 -1.6318 -1.1526 42 1 2.5035 0.9950 -4.7332 43 1 3.1107 -0.1185 -6.8027 44 1 2.7251 -1.6953 -6.0683 45 1 5.2151 -0.2294 -5.1974 46 1 5.2258 -1.1052 -6.7431 47 1 6.0380 -2.5888 -5.0425 48 1 4.4318 -3.1382 -5.5386 49 1 4.8239 -3.2386 -3.0788 50 1 4.9810 -1.4685 -3.0685 51 1 2.5335 -2.7121 -4.3210 52 1 2.6422 -2.5993 -2.5446 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699093338.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:33 Heat of formation + Delta-G solvation = -107.482355 kcal Electronic energy + Delta-G solvation = -29023.643254 eV Core-core repulsion = 25021.050351 eV Total energy + Delta-G solvation = -4002.592903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.26491 -40.17311 -39.08191 -37.90568 -36.31704 -35.71457 -33.80036 -33.29175 -33.10745 -32.02837 -30.29862 -27.80537 -26.71070 -25.85621 -25.29518 -23.51826 -22.69015 -21.76611 -21.23042 -21.07186 -19.92692 -19.32901 -18.17517 -17.85266 -17.58080 -16.99034 -16.49971 -16.25408 -15.97104 -15.82781 -15.72628 -15.29469 -15.21113 -15.15269 -14.86024 -14.51475 -14.29219 -14.07292 -13.93338 -13.78760 -13.59679 -13.50066 -13.22891 -12.94651 -12.92973 -12.81836 -12.58719 -12.41875 -12.28408 -12.15235 -12.11247 -12.01928 -11.80244 -11.60626 -11.54438 -11.52102 -11.34121 -10.82818 -10.38266 -10.22485 -10.02715 -9.89885 -9.34075 -8.47531 -5.96477 0.44096 1.36465 1.41927 1.56268 2.03458 2.20816 2.28583 2.29233 2.86958 3.19627 3.47586 3.65768 3.74341 3.86884 3.97321 4.00097 4.09731 4.12248 4.17998 4.23370 4.29489 4.41387 4.44814 4.46471 4.51283 4.57570 4.59631 4.65996 4.73632 4.79428 4.82110 4.87367 4.93153 4.94073 5.07623 5.16665 5.22808 5.26285 5.27733 5.29256 5.32238 5.40635 5.49190 5.51040 5.58007 5.66613 5.87015 6.08218 6.41713 6.55816 6.58709 7.11546 7.23145 7.54789 8.09652 8.70168 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.002128 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.779910 B =13152.034050 C =14940.594362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.146 3.854 3 H 0.069 0.931 4 C -0.113 4.113 5 C 0.063 3.937 6 N -0.681 5.681 7 C 0.065 3.935 8 C 0.438 3.562 9 O -0.622 6.622 10 N -0.574 5.574 11 C -0.333 4.333 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.921 5.921 15 Si 0.994 3.006 16 H -0.273 1.273 17 H -0.270 1.270 18 H -0.272 1.272 19 N -0.709 5.709 20 C 0.548 3.452 21 O -0.591 6.591 22 C -0.191 4.191 23 C -0.067 4.067 24 C -0.091 4.091 25 C -0.113 4.113 26 C -0.120 4.120 27 C -0.117 4.117 28 C -0.074 4.074 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.064 0.936 36 H 0.347 0.653 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.410 0.590 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.049 0.951 46 H 0.081 0.919 47 H 0.060 0.940 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.046 0.954 51 H 0.095 0.905 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.653 0.109 -24.304 27.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.041 3.959 3 H 0.087 0.913 4 C -0.151 4.151 5 C -0.065 4.065 6 N -0.314 5.314 7 C -0.068 4.068 8 C 0.226 3.774 9 O -0.508 6.508 10 N -0.211 5.211 11 C -0.462 4.462 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.562 5.562 15 Si 0.817 3.183 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.197 1.197 19 N -0.361 5.361 20 C 0.338 3.662 21 O -0.473 6.473 22 C -0.194 4.194 23 C -0.087 4.087 24 C -0.128 4.128 25 C -0.151 4.151 26 C -0.158 4.158 27 C -0.155 4.155 28 C -0.111 4.111 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.166 0.834 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.249 0.751 42 H 0.125 0.875 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.068 0.932 46 H 0.100 0.900 47 H 0.079 0.921 48 H 0.092 0.908 49 H 0.093 0.907 50 H 0.065 0.935 51 H 0.113 0.887 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.279 1.114 -23.386 27.423 hybrid contribution 1.198 -0.702 0.054 1.390 sum -13.081 0.412 -23.332 26.752 Atomic orbital electron populations 1.22091 0.94112 1.02910 1.02243 1.20897 0.94706 0.96694 0.83577 0.91270 1.21770 0.94100 1.02130 0.97125 1.21991 0.95696 0.98993 0.89849 1.60035 1.08514 1.21878 1.40971 1.21517 0.89811 1.01127 0.94317 1.20843 0.82354 0.84819 0.89411 1.90487 1.54137 1.52045 1.54176 1.41952 1.06315 1.49220 1.23587 1.19712 0.92354 1.31929 1.02238 0.90235 1.26066 0.95184 0.98115 1.02009 1.69676 1.02951 1.44545 1.39039 0.84859 0.78078 0.78011 0.77323 1.19711 1.19481 1.19693 1.46060 1.66400 1.14559 1.09122 1.18869 0.76722 0.86061 0.84561 1.90755 1.52960 1.17671 1.85937 1.21284 1.06703 0.98207 0.93186 1.23498 0.91227 0.99479 0.94516 1.21005 0.96206 1.01135 0.94464 1.21260 0.94958 0.97676 1.01201 1.21147 1.01690 0.97837 0.95078 1.21316 0.94659 1.02009 0.97479 1.20803 0.96437 0.90231 1.03625 0.91085 0.90488 0.93795 0.89329 0.89828 0.94393 0.91705 0.83410 0.91597 0.88405 0.77015 0.91283 0.75146 0.87536 0.89637 0.88896 0.93223 0.90025 0.92086 0.90753 0.90668 0.93492 0.88704 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.48 71.98 0.68 -1.90 16 2 C 0.15 2.72 2.57 44.99 0.12 2.83 16 3 H 0.07 1.61 7.58 -2.39 -0.02 1.59 16 4 C -0.11 -2.05 5.01 30.59 0.15 -1.89 16 5 C 0.06 1.44 5.57 86.31 0.48 1.92 16 6 N -0.68 -20.88 6.12 -517.92 -3.17 -24.05 16 7 C 0.06 2.23 6.17 85.56 0.53 2.76 16 8 C 0.44 20.90 7.82 87.66 0.69 21.59 16 9 O -0.62 -34.41 15.78 -3.07 -0.05 -34.46 16 10 N -0.57 -29.57 5.29 -306.98 -1.62 -31.19 16 11 C -0.33 -18.95 9.68 84.04 0.81 -18.13 16 12 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 13 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 14 N -0.92 -49.81 13.05 21.66 0.28 -49.52 16 15 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 N -0.71 -12.36 4.49 -446.16 -2.00 -14.37 16 20 C 0.55 12.19 7.71 86.57 0.67 12.86 16 21 O -0.59 -18.02 15.84 -4.07 -0.06 -18.09 16 22 C -0.19 -3.18 5.10 -17.87 -0.09 -3.27 16 23 C -0.07 -1.07 8.92 25.34 0.23 -0.84 16 24 C -0.09 -0.89 5.62 30.09 0.17 -0.72 16 25 C -0.11 -1.15 5.66 30.21 0.17 -0.98 16 26 C -0.12 -1.18 5.27 29.79 0.16 -1.03 16 27 C -0.12 -1.39 5.66 30.22 0.17 -1.22 16 28 C -0.07 -0.81 5.38 30.11 0.16 -0.65 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.04 0.78 7.75 -2.39 -0.02 0.77 16 35 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.35 10.75 8.43 -89.70 -0.76 10.00 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.40 19.43 7.90 -92.71 -0.73 18.69 16 40 H 0.28 14.00 8.31 -92.72 -0.77 13.23 16 41 H 0.41 5.30 6.39 -92.71 -0.59 4.71 16 42 H 0.11 2.07 7.44 -2.91 -0.02 2.05 16 43 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.09 0.68 6.75 -2.38 -0.02 0.67 16 45 H 0.05 0.67 7.85 -2.39 -0.02 0.65 16 46 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.07 0.55 7.88 -2.39 -0.02 0.53 16 49 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.05 0.74 7.85 -2.39 -0.02 0.72 16 51 H 0.09 0.78 6.74 -2.38 -0.02 0.76 16 52 H 0.08 0.69 5.99 -2.39 -0.01 0.67 16 Total: -1.00 -72.59 414.30 -0.19 -72.78 By element: Atomic # 1 Polarization: 44.12 SS G_CDS: -1.15 Total: 42.97 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 5.56 Total: 11.03 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -6.51 Total: -119.14 kcal Atomic # 8 Polarization: -52.43 SS G_CDS: -0.11 Total: -52.55 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -72.59 -0.19 -72.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699093338.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.702 kcal (2) G-P(sol) polarization free energy of solvation -72.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds