Wall clock time and date at job start Tue Mar 31 2020 20:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47521 * 2 1 4 4 C 1.53006 * 109.47102 * 240.00231 * 2 1 3 5 5 C 1.52997 * 109.47127 * 175.00294 * 4 2 1 6 6 N 1.46496 * 109.47294 * 179.97438 * 5 4 2 7 7 C 1.36935 * 120.00627 * 179.97438 * 6 5 4 8 8 H 1.08012 * 119.99691 * 359.97438 * 7 6 5 9 9 C 1.38805 * 120.00809 * 180.02562 * 7 6 5 10 10 N 1.31623 * 119.99595 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00541 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47128 * 89.99754 * 11 9 7 13 13 H 1.48501 * 109.47310 * 209.99768 * 11 9 7 14 14 H 1.48501 * 109.46818 * 329.99523 * 11 9 7 15 15 N 1.46497 * 109.47340 * 120.00250 * 2 1 3 16 16 C 1.34778 * 119.99887 * 274.99893 * 15 2 1 17 17 O 1.21281 * 119.99825 * 359.97438 * 16 15 2 18 18 C 1.50704 * 120.00163 * 179.97438 * 16 15 2 19 19 C 1.52991 * 110.43504 * 180.02562 * 18 16 15 20 20 C 1.54887 * 110.75774 * 172.63202 * 19 18 16 21 21 C 1.54269 * 104.19817 * 203.74295 * 20 19 18 22 22 C 1.53869 * 106.59921 * 23.60501 * 21 20 19 23 23 C 1.54266 * 106.59836 * 0.02562 * 22 21 20 24 24 C 1.54631 * 110.48356 * 57.46073 * 18 16 15 25 25 C 1.54827 * 101.60452 * 266.08164 * 24 18 16 26 26 N 1.46769 * 105.49672 * 334.56828 * 25 24 18 27 27 C 1.34420 * 111.29773 * 17.03681 * 26 25 24 28 28 O 1.21281 * 124.94326 * 179.63206 * 27 26 25 29 29 H 1.09002 * 109.46922 * 300.00404 * 1 2 3 30 30 H 1.09006 * 109.46822 * 59.99692 * 1 2 3 31 31 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47002 * 294.99868 * 4 2 1 33 33 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 34 34 H 1.09001 * 109.47289 * 299.99953 * 5 4 2 35 35 H 1.09004 * 109.47261 * 59.99697 * 5 4 2 36 36 H 0.97006 * 119.99755 * 359.97438 * 6 5 4 37 37 H 0.97000 * 120.00324 * 180.02562 * 10 9 7 38 38 H 0.97001 * 120.00293 * 94.99036 * 15 2 1 39 39 H 1.09005 * 110.67590 * 296.06286 * 19 18 16 40 40 H 1.09000 * 110.48175 * 322.41817 * 20 19 18 41 41 H 1.08999 * 110.49018 * 85.06336 * 20 19 18 42 42 H 1.09000 * 110.02849 * 264.32126 * 21 20 19 43 43 H 1.08998 * 110.07601 * 142.91530 * 21 20 19 44 44 H 1.09004 * 110.03502 * 240.71783 * 22 21 20 45 45 H 1.09000 * 110.07633 * 119.30778 * 22 21 20 46 46 H 1.09001 * 110.48901 * 217.70674 * 23 22 21 47 47 H 1.08999 * 110.48876 * 95.06634 * 23 22 21 48 48 H 1.09005 * 110.96973 * 24.23693 * 24 18 16 49 49 H 1.08997 * 110.96844 * 147.99841 * 24 18 16 50 50 H 1.08998 * 110.21807 * 215.57100 * 25 24 18 51 51 H 1.09008 * 110.25492 * 93.58305 * 25 24 18 52 52 H 0.97000 * 124.34931 * 197.06070 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0532 -1.3044 -2.5096 7 6 5.3952 -1.3405 -2.7795 8 1 6.0936 -0.8590 -2.1109 9 6 5.8579 -1.9948 -3.9128 10 7 5.0068 -2.5810 -4.7279 11 14 7.6887 -2.0446 -4.2807 12 1 8.2887 -3.2454 -3.6455 13 1 7.8970 -2.1054 -5.7497 14 1 8.3357 -0.8226 -3.7391 15 7 2.0183 -0.6906 1.1961 16 6 2.1471 -0.0183 2.3571 17 8 1.8591 1.1586 2.4114 18 6 2.6489 -0.7288 3.5877 19 6 2.7087 0.2352 4.7741 20 6 3.0452 -0.5237 6.0817 21 6 2.4846 0.3805 7.1989 22 6 1.3804 1.2387 6.5573 23 6 1.3080 0.8257 5.0727 24 6 4.0401 -1.3504 3.3242 25 6 3.6623 -2.7905 2.8991 26 7 2.3594 -3.0540 3.5213 27 6 1.7656 -1.9133 3.9125 28 8 0.6798 -1.8437 4.4485 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7715 -1.2057 33 1 1.6054 -0.2617 -2.1370 34 1 3.8532 0.4369 -1.3573 35 1 3.9994 -1.0729 -0.4260 36 1 3.4259 -1.7365 -3.1102 37 1 5.3301 -3.0386 -5.5197 38 1 2.2489 -1.6318 1.1526 39 1 3.4316 1.0297 4.5884 40 1 2.5536 -1.4964 6.0955 41 1 4.1238 -0.6387 6.1893 42 1 3.2741 1.0209 7.5923 43 1 2.0658 -0.2296 7.9992 44 1 1.6339 2.2957 6.6392 45 1 0.4251 1.0452 7.0453 46 1 1.1190 1.6954 4.4435 47 1 0.5357 0.0710 4.9239 48 1 4.5553 -0.8264 2.5190 49 1 4.6430 -1.3563 4.2322 50 1 4.4055 -3.4986 3.2657 51 1 3.5820 -2.8548 1.8139 52 1 1.9763 -3.9377 3.6359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699110488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:09 Heat of formation + Delta-G solvation = -78.090108 kcal Electronic energy + Delta-G solvation = -31347.294705 eV Core-core repulsion = 27345.976346 eV Total energy + Delta-G solvation = -4001.318359 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83718 -39.15428 -37.77499 -36.67467 -36.46732 -34.38654 -32.66663 -31.78020 -30.55217 -29.07208 -28.68964 -27.90565 -26.57797 -24.12626 -23.14486 -22.18983 -21.72121 -21.03325 -20.50387 -20.23013 -19.13399 -17.86226 -17.68776 -17.03011 -16.50898 -15.78568 -15.54159 -15.07848 -14.96641 -14.69319 -14.57413 -14.18031 -13.93645 -13.84615 -13.60206 -13.36814 -13.27378 -13.20700 -13.00685 -12.86417 -12.54455 -12.37654 -11.95786 -11.86497 -11.50660 -11.26402 -11.21692 -11.18323 -11.07364 -10.95413 -10.83204 -10.70873 -10.69047 -10.59997 -10.50703 -10.09348 -9.89439 -9.75265 -9.50296 -9.42664 -9.06033 -8.91031 -6.98105 -5.81831 -3.10956 2.16010 2.51442 2.97077 3.14634 3.39086 3.44837 3.46608 3.96010 4.08077 4.22789 4.47416 4.51484 4.56656 4.65433 4.72450 4.85511 4.98369 5.13933 5.22269 5.23142 5.32999 5.37594 5.42140 5.49813 5.51030 5.53949 5.58421 5.61922 5.69387 5.69663 5.74219 5.75840 5.90330 5.90485 6.00691 6.02165 6.17415 6.18960 6.24738 6.29712 6.38606 6.41782 6.44919 6.51275 6.73821 6.74102 6.80625 7.45080 7.64482 7.92051 8.15848 8.36982 9.48125 10.05644 10.40121 11.41000 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015800 B = 0.002898 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.756101 B = 9659.906860 C =10275.934754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.091 0.909 4 C -0.136 4.136 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.717 5.717 16 C 0.537 3.463 17 O -0.521 6.521 18 C -0.109 4.109 19 C -0.054 4.054 20 C -0.122 4.122 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.133 4.133 24 C -0.126 4.126 25 C 0.091 3.909 26 N -0.730 5.730 27 C 0.537 3.463 28 O -0.510 6.510 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.019 0.981 35 H 0.016 0.984 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.101 0.899 49 H 0.098 0.902 50 H 0.092 0.908 51 H 0.081 0.919 52 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.895 1.144 21.417 22.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.109 0.891 4 C -0.174 4.174 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 N -0.369 5.369 16 C 0.321 3.679 17 O -0.396 6.396 18 C -0.115 4.115 19 C -0.073 4.073 20 C -0.159 4.159 21 C -0.158 4.158 22 C -0.160 4.160 23 C -0.170 4.170 24 C -0.164 4.164 25 C -0.033 4.033 26 N -0.387 5.387 27 C 0.321 3.679 28 O -0.385 6.385 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.037 0.963 35 H 0.034 0.966 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.233 0.767 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.096 0.904 47 H 0.109 0.891 48 H 0.120 0.880 49 H 0.116 0.884 50 H 0.110 0.890 51 H 0.099 0.901 52 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -6.464 2.192 21.708 22.755 hybrid contribution 0.931 -1.225 -0.578 1.644 sum -5.533 0.967 21.130 21.863 Atomic orbital electron populations 1.22162 0.95347 1.02048 1.02424 1.21029 0.93693 0.97744 0.83511 0.89075 1.22079 0.98125 1.00747 0.96447 1.20620 0.90268 0.95671 0.90670 1.42371 1.05394 1.64882 1.25147 1.19213 0.83797 1.28544 1.05577 0.91229 1.24746 0.97701 1.00897 0.97622 1.69658 1.32811 1.40590 1.15146 0.86196 0.85086 0.77673 0.77279 1.21708 1.21749 1.20724 1.46230 1.66946 1.14075 1.09686 1.19640 0.77690 0.87132 0.83394 1.90682 1.49116 1.15430 1.84379 1.21701 0.96963 0.96159 0.96723 1.21770 0.99724 0.95546 0.90293 1.22497 1.00322 0.98833 0.94262 1.22060 0.98172 0.97918 0.97610 1.22103 0.98404 0.99171 0.96350 1.22730 0.96756 1.02379 0.95101 1.22906 0.94697 0.94337 1.04500 1.22316 0.84836 0.97440 0.98724 1.46245 1.21462 1.09200 1.61754 1.20248 0.85528 0.84877 0.77216 1.90706 1.20277 1.85363 1.42170 0.92295 0.91401 0.92633 0.91493 0.90072 0.96334 0.96578 0.78316 0.93480 0.76685 0.89164 0.91698 0.91578 0.91984 0.92107 0.92230 0.92202 0.90365 0.89102 0.88014 0.88392 0.89018 0.90085 0.74626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.48 37.16 0.35 -1.63 16 2 C 0.14 1.93 2.57 -67.93 -0.17 1.76 16 3 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 4 C -0.14 -2.01 4.87 -26.73 -0.13 -2.14 16 5 C 0.16 2.92 6.15 -4.05 -0.02 2.90 16 6 N -0.73 -17.83 5.60 -59.91 -0.34 -18.16 16 7 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 10 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 11 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 N -0.72 -8.95 4.33 -53.80 -0.23 -9.18 16 16 C 0.54 7.18 6.21 -10.98 -0.07 7.12 16 17 O -0.52 -8.38 13.87 5.56 0.08 -8.30 16 18 C -0.11 -1.18 0.41 -155.67 -0.06 -1.24 16 19 C -0.05 -0.59 1.97 -88.62 -0.17 -0.77 16 20 C -0.12 -1.13 5.42 -25.07 -0.14 -1.26 16 21 C -0.12 -1.08 6.80 -25.61 -0.17 -1.26 16 22 C -0.12 -1.26 6.80 -25.62 -0.17 -1.44 16 23 C -0.13 -1.65 5.22 -25.06 -0.13 -1.78 16 24 C -0.13 -1.02 6.02 -24.91 -0.15 -1.17 16 25 C 0.09 0.64 6.99 -2.93 -0.02 0.62 16 26 N -0.73 -5.97 6.24 -59.01 -0.37 -6.34 16 27 C 0.54 6.11 5.24 -10.86 -0.06 6.06 16 28 O -0.51 -7.48 15.01 5.56 0.08 -7.39 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.02 0.30 7.75 -51.93 -0.40 -0.11 16 36 H 0.38 9.82 7.67 -40.82 -0.31 9.50 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.40 4.49 6.13 -40.82 -0.25 4.24 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.67 6.37 -51.93 -0.33 0.34 16 41 H 0.07 0.50 7.56 -51.93 -0.39 0.11 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 1.10 6.77 -51.93 -0.35 0.75 16 47 H 0.09 1.32 5.25 -51.93 -0.27 1.05 16 48 H 0.10 0.87 7.89 -51.93 -0.41 0.46 16 49 H 0.10 0.63 6.78 -51.93 -0.35 0.28 16 50 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 51 H 0.08 0.61 6.82 -51.92 -0.35 0.26 16 52 H 0.41 2.73 8.96 -40.82 -0.37 2.37 16 LS Contribution 398.01 15.07 6.00 6.00 Total: -1.00 -33.09 398.01 -9.26 -42.35 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -8.81 Total: 12.50 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.37 Total: -1.39 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.21 Total: -60.56 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.16 Total: -15.70 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.09 -9.26 -42.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699110488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.741 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds