Wall clock time and date at job start Tue Mar 31 2020 20:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47521 * 2 1 4 4 C 1.53006 * 109.47102 * 240.00231 * 2 1 3 5 5 C 1.52997 * 109.47127 * 175.00294 * 4 2 1 6 6 N 1.46496 * 109.47294 * 179.97438 * 5 4 2 7 7 C 1.36935 * 120.00627 * 179.97438 * 6 5 4 8 8 H 1.08012 * 119.99691 * 359.97438 * 7 6 5 9 9 C 1.38805 * 120.00809 * 180.02562 * 7 6 5 10 10 N 1.31623 * 119.99595 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00541 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47128 * 89.99754 * 11 9 7 13 13 H 1.48501 * 109.47310 * 209.99768 * 11 9 7 14 14 H 1.48501 * 109.46818 * 329.99523 * 11 9 7 15 15 N 1.46497 * 109.47340 * 120.00250 * 2 1 3 16 16 C 1.34778 * 119.99887 * 274.99893 * 15 2 1 17 17 O 1.21281 * 119.99825 * 359.97438 * 16 15 2 18 18 C 1.50704 * 120.00163 * 179.97438 * 16 15 2 19 19 C 1.52991 * 110.43504 * 180.02562 * 18 16 15 20 20 C 1.54887 * 110.75774 * 172.63202 * 19 18 16 21 21 C 1.54269 * 104.19817 * 203.74295 * 20 19 18 22 22 C 1.53869 * 106.59921 * 23.60501 * 21 20 19 23 23 C 1.54266 * 106.59836 * 0.02562 * 22 21 20 24 24 C 1.54631 * 110.48356 * 57.46073 * 18 16 15 25 25 C 1.54827 * 101.60452 * 266.08164 * 24 18 16 26 26 N 1.46769 * 105.49672 * 334.56828 * 25 24 18 27 27 C 1.34420 * 111.29773 * 17.03681 * 26 25 24 28 28 O 1.21281 * 124.94326 * 179.63206 * 27 26 25 29 29 H 1.09002 * 109.46922 * 300.00404 * 1 2 3 30 30 H 1.09006 * 109.46822 * 59.99692 * 1 2 3 31 31 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47002 * 294.99868 * 4 2 1 33 33 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 34 34 H 1.09001 * 109.47289 * 299.99953 * 5 4 2 35 35 H 1.09004 * 109.47261 * 59.99697 * 5 4 2 36 36 H 0.97006 * 119.99755 * 359.97438 * 6 5 4 37 37 H 0.97000 * 120.00324 * 180.02562 * 10 9 7 38 38 H 0.97001 * 120.00293 * 94.99036 * 15 2 1 39 39 H 1.09005 * 110.67590 * 296.06286 * 19 18 16 40 40 H 1.09000 * 110.48175 * 322.41817 * 20 19 18 41 41 H 1.08999 * 110.49018 * 85.06336 * 20 19 18 42 42 H 1.09000 * 110.02849 * 264.32126 * 21 20 19 43 43 H 1.08998 * 110.07601 * 142.91530 * 21 20 19 44 44 H 1.09004 * 110.03502 * 240.71783 * 22 21 20 45 45 H 1.09000 * 110.07633 * 119.30778 * 22 21 20 46 46 H 1.09001 * 110.48901 * 217.70674 * 23 22 21 47 47 H 1.08999 * 110.48876 * 95.06634 * 23 22 21 48 48 H 1.09005 * 110.96973 * 24.23693 * 24 18 16 49 49 H 1.08997 * 110.96844 * 147.99841 * 24 18 16 50 50 H 1.08998 * 110.21807 * 215.57100 * 25 24 18 51 51 H 1.09008 * 110.25492 * 93.58305 * 25 24 18 52 52 H 0.97000 * 124.34931 * 197.06070 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0532 -1.3044 -2.5096 7 6 5.3952 -1.3405 -2.7795 8 1 6.0936 -0.8590 -2.1109 9 6 5.8579 -1.9948 -3.9128 10 7 5.0068 -2.5810 -4.7279 11 14 7.6887 -2.0446 -4.2807 12 1 8.2887 -3.2454 -3.6455 13 1 7.8970 -2.1054 -5.7497 14 1 8.3357 -0.8226 -3.7391 15 7 2.0183 -0.6906 1.1961 16 6 2.1471 -0.0183 2.3571 17 8 1.8591 1.1586 2.4114 18 6 2.6489 -0.7288 3.5877 19 6 2.7087 0.2352 4.7741 20 6 3.0452 -0.5237 6.0817 21 6 2.4846 0.3805 7.1989 22 6 1.3804 1.2387 6.5573 23 6 1.3080 0.8257 5.0727 24 6 4.0401 -1.3504 3.3242 25 6 3.6623 -2.7905 2.8991 26 7 2.3594 -3.0540 3.5213 27 6 1.7656 -1.9133 3.9125 28 8 0.6798 -1.8437 4.4485 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7715 -1.2057 33 1 1.6054 -0.2617 -2.1370 34 1 3.8532 0.4369 -1.3573 35 1 3.9994 -1.0729 -0.4260 36 1 3.4259 -1.7365 -3.1102 37 1 5.3301 -3.0386 -5.5197 38 1 2.2489 -1.6318 1.1526 39 1 3.4316 1.0297 4.5884 40 1 2.5536 -1.4964 6.0955 41 1 4.1238 -0.6387 6.1893 42 1 3.2741 1.0209 7.5923 43 1 2.0658 -0.2296 7.9992 44 1 1.6339 2.2957 6.6392 45 1 0.4251 1.0452 7.0453 46 1 1.1190 1.6954 4.4435 47 1 0.5357 0.0710 4.9239 48 1 4.5553 -0.8264 2.5190 49 1 4.6430 -1.3563 4.2322 50 1 4.4055 -3.4986 3.2657 51 1 3.5820 -2.8548 1.8139 52 1 1.9763 -3.9377 3.6359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699110488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:08 Heat of formation + Delta-G solvation = -101.424085 kcal Electronic energy + Delta-G solvation = -31348.306542 eV Core-core repulsion = 27345.976346 eV Total energy + Delta-G solvation = -4002.330196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.71738 -40.20354 -38.63934 -37.73735 -37.54244 -36.07604 -33.71058 -33.25427 -31.90198 -29.81906 -29.51908 -29.40349 -27.40916 -25.87077 -24.14790 -23.16622 -22.94780 -22.16910 -21.58341 -21.05151 -20.03722 -19.21955 -18.61128 -18.45498 -17.57880 -16.73960 -16.55794 -16.38936 -16.06576 -15.83147 -15.52797 -15.40300 -15.19285 -15.02921 -14.91422 -14.67819 -14.35514 -14.21016 -14.05849 -13.82916 -13.55675 -13.24211 -13.12212 -12.92664 -12.86169 -12.63567 -12.40649 -12.30266 -12.25991 -12.01295 -12.00312 -11.97967 -11.95099 -11.79948 -11.64844 -11.54760 -11.27519 -10.93244 -10.87261 -10.49173 -10.15647 -10.14327 -8.98095 -7.93247 -5.22040 1.22998 1.50207 1.51603 1.53454 1.59954 2.05540 2.33061 2.57873 3.17738 3.30920 3.39830 3.41100 3.59178 3.74642 3.77275 3.87840 3.99025 4.03917 4.12064 4.22650 4.36544 4.41518 4.53110 4.57213 4.61738 4.62625 4.69731 4.72856 4.75804 4.78429 4.80978 4.83656 4.90053 4.94815 4.99936 5.04271 5.12361 5.19195 5.21554 5.23431 5.31210 5.38357 5.46395 5.51651 5.52300 5.54689 5.71847 5.95945 6.28886 6.41925 7.08685 7.16367 7.35888 8.11079 8.34392 9.30205 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015800 B = 0.002898 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.756101 B = 9659.906860 C =10275.934754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.151 3.849 3 H 0.077 0.923 4 C -0.120 4.120 5 C 0.156 3.844 6 N -0.745 5.745 7 C -0.243 4.243 8 H 0.076 0.924 9 C -0.074 4.074 10 N -0.969 5.969 11 Si 0.971 3.029 12 H -0.283 1.283 13 H -0.299 1.299 14 H -0.271 1.271 15 N -0.712 5.712 16 C 0.532 3.468 17 O -0.554 6.554 18 C -0.108 4.108 19 C -0.055 4.055 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.133 4.133 24 C -0.123 4.123 25 C 0.090 3.910 26 N -0.714 5.714 27 C 0.534 3.466 28 O -0.549 6.549 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.009 0.991 35 H 0.031 0.969 36 H 0.374 0.626 37 H 0.251 0.749 38 H 0.405 0.595 39 H 0.089 0.911 40 H 0.054 0.946 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.068 0.932 48 H 0.098 0.902 49 H 0.121 0.879 50 H 0.123 0.877 51 H 0.078 0.922 52 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.168 0.282 22.731 23.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.047 3.953 3 H 0.095 0.905 4 C -0.158 4.158 5 C 0.029 3.971 6 N -0.388 5.388 7 C -0.375 4.375 8 H 0.094 0.906 9 C -0.266 4.266 10 N -0.620 5.620 11 Si 0.800 3.200 12 H -0.210 1.210 13 H -0.226 1.226 14 H -0.196 1.196 15 N -0.365 5.365 16 C 0.318 3.682 17 O -0.431 6.431 18 C -0.115 4.115 19 C -0.074 4.074 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.161 4.161 23 C -0.171 4.171 24 C -0.161 4.161 25 C -0.033 4.033 26 N -0.370 5.370 27 C 0.319 3.681 28 O -0.427 6.427 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.027 0.973 35 H 0.048 0.952 36 H 0.206 0.794 37 H 0.060 0.940 38 H 0.242 0.758 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.117 0.883 49 H 0.140 0.860 50 H 0.141 0.859 51 H 0.097 0.903 52 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -4.714 1.308 23.048 23.562 hybrid contribution 0.338 -0.902 -0.972 1.369 sum -4.375 0.405 22.076 22.509 Atomic orbital electron populations 1.22092 0.94268 1.02556 1.02375 1.20870 0.94415 0.96822 0.83243 0.90514 1.21901 0.95298 1.01455 0.97124 1.20750 0.92827 0.94417 0.89075 1.42570 1.04521 1.65181 1.26529 1.19606 0.85204 1.27355 1.05302 0.90647 1.25534 1.01804 1.01409 0.97888 1.69808 1.34583 1.41991 1.15634 0.85178 0.80327 0.78077 0.76420 1.21001 1.22558 1.19586 1.46192 1.66631 1.14329 1.09317 1.20140 0.77027 0.86903 0.84156 1.90670 1.50501 1.16997 1.84970 1.21689 0.98560 0.95958 0.95283 1.21784 0.98446 0.95803 0.91361 1.22466 1.01765 0.97946 0.93008 1.22080 0.98030 0.97942 0.97566 1.22110 0.99108 0.99907 0.94927 1.22626 0.97417 1.00760 0.96266 1.22998 0.93033 0.94449 1.05582 1.22489 0.84704 0.97550 0.98603 1.46202 1.21599 1.08851 1.60366 1.20324 0.85065 0.85721 0.77018 1.90692 1.21917 1.85955 1.44159 0.93666 0.90133 0.91810 0.90647 0.90092 0.97287 0.95154 0.79384 0.94034 0.75828 0.89253 0.92682 0.89037 0.90341 0.91580 0.91632 0.92494 0.92825 0.91378 0.88337 0.86044 0.85857 0.90343 0.73530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.48 71.98 0.68 -3.02 16 2 C 0.15 3.97 2.57 44.99 0.12 4.08 16 3 H 0.08 2.27 7.58 -2.38 -0.02 2.26 16 4 C -0.12 -3.43 4.87 30.60 0.15 -3.28 16 5 C 0.16 5.70 6.15 86.38 0.53 6.23 16 6 N -0.75 -35.76 5.60 -343.46 -1.92 -37.69 16 7 C -0.24 -12.97 9.99 84.03 0.84 -12.13 16 8 H 0.08 3.86 7.83 -2.90 -0.02 3.84 16 9 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 10 N -0.97 -57.50 13.06 21.65 0.28 -57.21 16 11 Si 0.97 44.38 29.55 68.60 2.03 46.41 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 14 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 15 N -0.71 -17.31 4.33 -442.52 -1.92 -19.23 16 16 C 0.53 14.21 6.21 87.66 0.54 14.76 16 17 O -0.55 -18.38 13.87 -3.03 -0.04 -18.42 16 18 C -0.11 -2.25 0.41 -52.94 -0.02 -2.27 16 19 C -0.05 -1.16 1.97 -9.50 -0.02 -1.18 16 20 C -0.11 -1.89 5.42 31.67 0.17 -1.72 16 21 C -0.12 -1.94 6.80 31.32 0.21 -1.72 16 22 C -0.12 -2.51 6.80 31.32 0.21 -2.30 16 23 C -0.13 -3.45 5.22 31.68 0.17 -3.28 16 24 C -0.12 -1.67 6.02 31.77 0.19 -1.48 16 25 C 0.09 1.00 6.99 86.95 0.61 1.60 16 26 N -0.71 -10.21 6.24 -459.19 -2.87 -13.07 16 27 C 0.53 11.72 5.24 87.90 0.46 12.18 16 28 O -0.55 -16.28 15.01 -3.03 -0.05 -16.32 16 29 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.03 1.04 7.75 -2.38 -0.02 1.03 16 36 H 0.37 19.14 7.67 -92.70 -0.71 18.42 16 37 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 38 H 0.40 8.57 6.13 -92.71 -0.57 8.01 16 39 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.05 1.04 6.37 -2.39 -0.02 1.02 16 41 H 0.09 1.05 7.56 -2.39 -0.02 1.03 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.05 1.61 6.77 -2.39 -0.02 1.59 16 47 H 0.07 2.09 5.25 -2.39 -0.01 2.08 16 48 H 0.10 1.46 7.89 -2.38 -0.02 1.44 16 49 H 0.12 1.10 6.78 -2.39 -0.02 1.09 16 50 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.08 0.96 6.82 -2.38 -0.02 0.95 16 52 H 0.42 4.69 8.96 -92.71 -0.83 3.86 16 Total: -1.00 -72.23 398.01 -0.34 -72.56 By element: Atomic # 1 Polarization: 41.30 SS G_CDS: -1.17 Total: 40.13 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 5.31 Total: 2.83 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -6.42 Total: -127.20 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -0.09 Total: -34.74 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -72.23 -0.34 -72.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699110488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.859 kcal (2) G-P(sol) polarization free energy of solvation -72.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds