Wall clock time and date at job start Tue Mar 31 2020 20:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.51273 * 120.85196 * 2 1 4 4 C 1.53222 * 108.53878 * 128.62452 * 3 2 1 5 5 C 1.52958 * 109.40659 * 54.62735 * 4 3 2 6 6 C 1.50697 * 109.41667 * 176.29793 * 5 4 3 7 7 O 1.21281 * 120.00454 * 120.35016 * 6 5 4 8 8 N 1.34781 * 119.99848 * 300.35080 * 6 5 4 9 9 C 1.46494 * 120.00193 * 180.02562 * 8 6 5 10 10 H 1.08995 * 109.47360 * 34.60538 * 9 8 6 11 11 C 1.53011 * 109.47051 * 274.60448 * 9 8 6 12 12 C 1.53000 * 109.47479 * 154.60879 * 9 8 6 13 13 N 1.46903 * 109.46647 * 305.18342 * 12 9 8 14 14 C 1.46901 * 111.00127 * 163.93541 * 13 12 9 15 15 C 1.46896 * 111.00241 * 287.89153 * 13 12 9 16 16 C 1.50696 * 109.47532 * 170.00223 * 15 13 12 17 17 O 1.21295 * 120.00027 * 359.97438 * 16 15 13 18 18 N 1.34772 * 120.00186 * 179.97438 * 16 15 13 19 19 C 1.37097 * 119.99941 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00271 * 0.02562 * 19 18 16 21 21 C 1.38955 * 120.00276 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00457 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99658 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47197 * 89.99892 * 23 21 19 25 25 H 1.48502 * 109.46878 * 210.00173 * 23 21 19 26 26 H 1.48504 * 109.47156 * 329.99832 * 23 21 19 27 27 C 1.52962 * 109.81579 * 296.40170 * 5 4 3 28 28 C 1.51269 * 120.85016 * 179.97438 * 2 1 3 29 29 H 1.07999 * 119.99594 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.00079 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.62389 * 248.34024 * 3 2 1 32 32 H 1.09002 * 109.62397 * 8.90492 * 3 2 1 33 33 H 1.09001 * 109.48306 * 174.60912 * 4 3 2 34 34 H 1.09007 * 109.48360 * 294.64617 * 4 3 2 35 35 H 1.08994 * 109.35531 * 56.46781 * 5 4 3 36 36 H 0.97006 * 119.99841 * 0.02562 * 8 6 5 37 37 H 1.08997 * 109.46930 * 179.97438 * 11 9 8 38 38 H 1.08995 * 109.47111 * 300.00242 * 11 9 8 39 39 H 1.08997 * 109.46806 * 60.00455 * 11 9 8 40 40 H 1.08994 * 109.47211 * 65.18067 * 12 9 8 41 41 H 1.08994 * 109.47454 * 185.18869 * 12 9 8 42 42 H 1.09002 * 109.46824 * 54.89321 * 14 13 12 43 43 H 1.08997 * 109.47281 * 174.89814 * 14 13 12 44 44 H 1.09000 * 109.46946 * 294.89718 * 14 13 12 45 45 H 1.09009 * 109.46753 * 290.00198 * 15 13 12 46 46 H 1.08996 * 109.47157 * 49.99676 * 15 13 12 47 47 H 0.97001 * 120.00532 * 359.97438 * 18 16 15 48 48 H 0.97003 * 119.99928 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.48118 * 303.61796 * 27 5 4 50 50 H 1.08998 * 109.48188 * 183.58117 * 27 5 4 51 51 H 1.09005 * 109.62156 * 351.08948 * 28 2 1 52 52 H 1.08997 * 109.62556 * 111.46594 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0858 1.2987 0.0000 4 6 3.1141 1.2519 1.1349 5 6 3.9804 0.0003 0.9845 6 6 5.0496 0.0005 2.0465 7 8 5.1118 -0.9105 2.8447 8 7 5.9369 1.0131 2.1092 9 6 6.9766 1.0131 3.1412 10 1 7.2949 -0.0109 3.3364 11 6 6.4193 1.6278 4.4268 12 6 8.1732 1.8361 2.6596 13 7 8.6309 1.3214 1.3621 14 6 9.5074 2.2906 0.6908 15 6 9.3021 0.0240 1.5173 16 6 9.5373 -0.5857 0.1594 17 8 9.1805 0.0025 -0.8395 18 7 10.1442 -1.7845 0.0549 19 6 10.3577 -2.3393 -1.1804 20 1 10.0399 -1.8156 -2.0699 21 6 10.9829 -3.5756 -1.2882 22 7 11.1880 -4.1072 -2.4724 23 14 11.5319 -4.4818 0.2503 24 1 10.4320 -5.3578 0.7278 25 1 12.7243 -5.3100 -0.0621 26 1 11.8758 -3.4980 1.3081 27 6 3.1141 -1.2513 1.1357 28 6 2.0857 -1.2987 0.0006 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 2.5988 1.4186 -0.9542 32 1 1.4027 2.1331 0.1589 33 1 3.7459 2.1389 1.0898 34 1 2.5963 1.2226 2.0937 35 1 4.4477 0.0006 -0.0001 36 1 5.8869 1.7420 1.4710 37 1 7.1928 1.6274 5.1947 38 1 6.1010 2.6518 4.2316 39 1 5.5669 1.0415 4.7699 40 1 7.8771 2.8795 2.5526 41 1 8.9822 1.7605 3.3862 42 1 10.3312 2.5553 1.3537 43 1 9.9041 1.8493 -0.2235 44 1 8.9372 3.1862 0.4443 45 1 10.2578 0.1675 2.0217 46 1 8.6745 -0.6410 2.1105 47 1 10.4300 -2.2548 0.8537 48 1 11.6241 -4.9704 -2.5475 49 1 2.5962 -1.2213 2.0944 50 1 3.7459 -2.1383 1.0912 51 1 1.4026 -2.1330 0.1600 52 1 2.5960 -1.4207 -0.9548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699459119.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:16 Heat of formation + Delta-G solvation = -62.761227 kcal Electronic energy + Delta-G solvation = -30405.167636 eV Core-core repulsion = 26404.513987 eV Total energy + Delta-G solvation = -4000.653649 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.25197 -38.91123 -38.02183 -36.89170 -34.74837 -33.81339 -33.08255 -31.66080 -31.33961 -30.70297 -28.25663 -27.03105 -26.79279 -24.61129 -23.16565 -22.85844 -22.00806 -20.70891 -20.02618 -19.30735 -18.54551 -18.24939 -17.20961 -16.25303 -16.17380 -15.38830 -15.05513 -15.01194 -14.99000 -14.81442 -14.28867 -14.21891 -14.01952 -13.75468 -13.53848 -13.32999 -13.21362 -13.04142 -12.84370 -12.51225 -12.46895 -12.22718 -12.19425 -11.98215 -11.82961 -11.74082 -11.58270 -11.45536 -11.29021 -11.19724 -11.11039 -10.74798 -10.65174 -10.57148 -10.31855 -9.96598 -9.59231 -9.52142 -9.17064 -8.91079 -8.56116 -8.16759 -8.00929 -6.30087 -3.81165 2.08471 2.81972 3.04178 3.09642 3.16942 3.27715 3.74814 3.91679 4.12026 4.41092 4.55709 4.58892 4.71328 4.86940 4.88040 4.96473 5.05469 5.12555 5.17993 5.24647 5.26688 5.28869 5.35551 5.41728 5.46634 5.54788 5.56392 5.58863 5.63407 5.67579 5.69881 5.76926 5.82985 5.85565 5.90118 5.91193 5.96962 5.99952 6.07886 6.11302 6.22773 6.41928 6.49101 6.62425 6.71478 7.11805 7.24488 7.59547 7.68419 8.15478 8.41101 8.61373 8.96299 9.43940 9.84648 10.82983 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009679 B = 0.003274 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.058079 B = 8550.880138 C =10039.509242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.086 4.086 4 C -0.103 4.103 5 C -0.108 4.108 6 C 0.522 3.478 7 O -0.548 6.548 8 N -0.705 5.705 9 C 0.144 3.856 10 H 0.086 0.914 11 C -0.160 4.160 12 C 0.043 3.957 13 N -0.515 5.515 14 C 0.023 3.977 15 C 0.040 3.960 16 C 0.455 3.545 17 O -0.560 6.560 18 N -0.591 5.591 19 C -0.303 4.303 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.882 5.882 23 Si 0.878 3.122 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.094 4.094 28 C -0.089 4.089 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.403 0.597 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.047 0.953 42 H 0.014 0.986 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.067 0.933 50 H 0.075 0.925 51 H 0.071 0.929 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.806 13.011 12.063 23.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.115 4.115 3 C -0.123 4.123 4 C -0.141 4.141 5 C -0.129 4.129 6 C 0.309 3.691 7 O -0.426 6.426 8 N -0.356 5.356 9 C 0.039 3.961 10 H 0.104 0.896 11 C -0.219 4.219 12 C -0.085 4.085 13 N -0.238 5.238 14 C -0.125 4.125 15 C -0.092 4.092 16 C 0.240 3.760 17 O -0.442 6.442 18 N -0.230 5.230 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.522 5.522 23 Si 0.704 3.296 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.132 4.132 28 C -0.126 4.126 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.237 0.763 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.033 0.967 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.106 0.894 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.086 0.914 50 H 0.094 0.906 51 H 0.089 0.911 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.301 12.510 11.523 22.878 hybrid contribution 1.300 -0.445 1.330 1.913 sum -14.000 12.065 12.854 22.512 Atomic orbital electron populations 1.23591 0.94983 1.01661 1.03787 1.22023 0.95070 0.95984 0.98437 1.20824 0.97442 0.94834 0.99196 1.21506 0.97004 0.96385 0.99224 1.21325 0.94924 0.97325 0.99347 1.20545 0.82177 0.81373 0.85053 1.90671 1.73750 1.35821 1.42323 1.45766 1.30675 1.25290 1.33831 1.20934 0.87140 1.00809 0.87252 0.89602 1.22139 1.01798 1.00935 0.97028 1.22490 0.96218 0.98885 0.90942 1.61538 1.40576 1.02440 1.19274 1.22531 0.94352 0.95368 1.00225 1.21951 0.97736 0.92155 0.97314 1.19588 0.83442 0.82882 0.90049 1.90517 1.53881 1.61793 1.38004 1.42222 1.54133 1.18275 1.08414 1.19408 1.36433 1.02342 0.85025 0.86288 1.25025 0.97500 0.96665 0.96897 1.69620 1.42271 1.18159 1.22121 0.86697 0.79453 0.80569 0.82838 1.19521 1.20189 1.19564 1.21323 0.96444 0.96942 0.98447 1.20875 0.97624 0.94611 0.99515 0.88661 0.88566 0.90380 0.91107 0.91208 0.91455 0.87993 0.76270 0.91819 0.92479 0.91908 0.90200 0.93478 0.96741 0.88628 0.91982 0.93416 0.89372 0.79766 0.91635 0.91404 0.90632 0.91069 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.73 13.99 29.01 0.41 -1.32 16 2 C -0.12 -1.07 5.35 -100.51 -0.54 -1.61 16 3 C -0.09 -0.71 6.03 -27.49 -0.17 -0.88 16 4 C -0.10 -0.91 5.14 -26.64 -0.14 -1.05 16 5 C -0.11 -1.23 2.42 -91.81 -0.22 -1.45 16 6 C 0.52 7.22 7.12 -10.98 -0.08 7.14 16 7 O -0.55 -9.52 15.60 5.56 0.09 -9.43 16 8 N -0.71 -8.35 4.66 -53.81 -0.25 -8.60 16 9 C 0.14 1.65 2.52 -67.93 -0.17 1.48 16 10 H 0.09 1.20 6.22 -51.93 -0.32 0.88 16 11 C -0.16 -1.49 9.49 37.16 0.35 -1.14 16 12 C 0.04 0.47 4.53 -3.82 -0.02 0.45 16 13 N -0.51 -7.57 4.17 -244.38 -1.02 -8.59 16 14 C 0.02 0.33 9.19 60.07 0.55 0.88 16 15 C 0.04 0.67 5.30 -4.98 -0.03 0.65 16 16 C 0.45 10.29 7.42 -10.99 -0.08 10.21 16 17 O -0.56 -14.55 13.96 5.54 0.08 -14.47 16 18 N -0.59 -14.27 5.09 -10.96 -0.06 -14.32 16 19 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 20 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 21 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 22 N -0.88 -25.91 13.96 55.50 0.77 -25.14 16 23 Si 0.88 19.77 27.74 -169.99 -4.71 15.05 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.27 -5.56 6.52 56.52 0.37 -5.19 16 27 C -0.09 -1.10 4.54 -26.63 -0.12 -1.22 16 28 C -0.09 -0.90 6.03 -27.48 -0.17 -1.06 16 29 H 0.10 0.71 7.92 -52.49 -0.42 0.29 16 30 H 0.10 0.76 7.92 -52.49 -0.42 0.35 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 33 H 0.07 0.52 7.43 -51.93 -0.39 0.13 16 34 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.40 4.19 7.95 -40.82 -0.32 3.86 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.72 7.99 -51.93 -0.42 0.31 16 41 H 0.05 0.47 8.05 -51.93 -0.42 0.05 16 42 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 43 H 0.10 1.75 5.79 -51.93 -0.30 1.45 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.72 8.12 -51.92 -0.42 0.30 16 46 H 0.09 1.43 6.50 -51.93 -0.34 1.10 16 47 H 0.37 7.99 5.76 -40.82 -0.24 7.75 16 48 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.07 1.02 7.99 -51.93 -0.42 0.60 16 51 H 0.07 0.66 7.89 -51.93 -0.41 0.25 16 52 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 411.19 15.07 6.20 6.20 Total: -1.00 -33.55 411.19 -8.58 -42.13 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -9.01 Total: 13.80 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -0.66 Total: 3.38 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.55 Total: -56.65 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: 0.16 Total: -23.90 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.71 Total: 15.05 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.55 -8.58 -42.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699459119.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.633 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds