Wall clock time and date at job start Tue Mar 31 2020 20:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.51268 * 120.85409 * 2 1 4 4 C 1.53228 * 108.53936 * 231.32756 * 3 2 1 5 5 C 1.52957 * 109.40236 * 305.37511 * 4 3 2 6 6 C 1.50700 * 109.41097 * 183.70463 * 5 4 3 7 7 O 1.21282 * 120.00266 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00094 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00178 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.46945 * 322.90435 * 9 8 6 11 11 C 1.53002 * 109.47221 * 82.90569 * 9 8 6 12 12 C 1.52994 * 109.47025 * 202.90879 * 9 8 6 13 13 N 1.46896 * 109.47374 * 55.13576 * 12 9 8 14 14 C 1.46903 * 110.99966 * 198.96597 * 13 12 9 15 15 C 1.46899 * 110.99926 * 75.01745 * 13 12 9 16 16 C 1.50697 * 109.47291 * 190.00095 * 15 13 12 17 17 O 1.21288 * 120.00067 * 359.97438 * 16 15 13 18 18 N 1.34783 * 120.00194 * 179.97438 * 16 15 13 19 19 C 1.37096 * 119.99985 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00121 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99712 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00159 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99661 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47465 * 59.99654 * 23 21 19 25 25 H 1.48509 * 109.46883 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47099 * 299.99404 * 23 21 19 27 27 C 1.52953 * 109.82037 * 63.59477 * 5 4 3 28 28 C 1.51272 * 120.84736 * 179.97438 * 2 1 3 29 29 H 1.08000 * 119.99763 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99957 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.62631 * 111.60717 * 3 2 1 32 32 H 1.08999 * 109.62268 * 351.04239 * 3 2 1 33 33 H 1.08998 * 109.48107 * 185.38995 * 4 3 2 34 34 H 1.09007 * 109.47991 * 65.35104 * 4 3 2 35 35 H 1.09004 * 109.41455 * 303.55627 * 5 4 3 36 36 H 0.96998 * 119.99438 * 359.97438 * 8 6 5 37 37 H 1.09000 * 109.46913 * 59.99736 * 11 9 8 38 38 H 1.09000 * 109.46804 * 180.02562 * 11 9 8 39 39 H 1.09000 * 109.46852 * 300.00052 * 11 9 8 40 40 H 1.09005 * 109.46836 * 295.13793 * 12 9 8 41 41 H 1.09001 * 109.47130 * 175.14271 * 12 9 8 42 42 H 1.09000 * 109.47532 * 289.97954 * 14 13 12 43 43 H 1.09000 * 109.47201 * 49.97917 * 14 13 12 44 44 H 1.09005 * 109.46801 * 169.97778 * 14 13 12 45 45 H 1.09007 * 109.46781 * 309.99851 * 15 13 12 46 46 H 1.08999 * 109.47577 * 69.99933 * 15 13 12 47 47 H 0.97004 * 119.99836 * 359.97438 * 18 16 15 48 48 H 0.97002 * 120.00382 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.48056 * 56.38300 * 27 5 4 50 50 H 1.09003 * 109.48080 * 176.41900 * 27 5 4 51 51 H 1.08999 * 109.62411 * 248.38797 * 28 2 1 52 52 H 1.09001 * 109.62284 * 8.77052 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0858 1.2986 0.0000 4 6 3.1150 1.2513 -1.1342 5 6 3.9811 -0.0003 -0.9826 6 6 5.0511 -0.0005 -2.0438 7 8 5.1137 0.9104 -2.8421 8 7 5.9386 -1.0130 -2.1057 9 6 6.9792 -1.0129 -3.1370 10 1 6.5717 -0.6103 -4.0642 11 6 8.1531 -0.1461 -2.6770 12 6 7.4639 -2.4448 -3.3724 13 7 6.3173 -3.3022 -3.7010 14 6 6.6438 -4.7196 -3.4950 15 6 5.8574 -3.0623 -5.0753 16 6 4.5444 -3.7683 -5.2961 17 8 4.0415 -4.4087 -4.3971 18 7 3.9289 -3.6881 -6.4925 19 6 2.7347 -4.3308 -6.6934 20 1 2.2870 -4.9010 -5.8930 21 6 2.1005 -4.2485 -7.9270 22 7 2.6451 -3.5542 -8.9008 23 14 0.4730 -5.1236 -8.2006 24 1 -0.5359 -4.6035 -7.2431 25 1 0.0077 -4.8805 -9.5898 26 1 0.6531 -6.5820 -7.9864 27 6 3.1148 -1.2518 -1.1338 28 6 2.0857 -1.2987 0.0006 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 2.5981 1.4190 0.9545 32 1 1.4029 2.1330 -0.1599 33 1 3.7468 2.1383 -1.0890 34 1 2.5978 1.2215 -2.0933 35 1 4.4478 -0.0008 0.0024 36 1 5.8888 -1.7413 -1.4670 37 1 8.5605 -0.5488 -1.7496 38 1 8.9270 -0.1457 -3.4445 39 1 7.8076 0.8740 -2.5093 40 1 7.9492 -2.8170 -2.4701 41 1 8.1750 -2.4565 -4.1985 42 1 7.3560 -5.0426 -4.2543 43 1 7.0825 -4.8514 -2.5059 44 1 5.7350 -5.3166 -3.5719 45 1 5.7252 -1.9918 -5.2325 46 1 6.5978 -3.4441 -5.7782 47 1 4.3309 -3.1756 -7.2113 48 1 2.2022 -3.4964 -9.7619 49 1 2.5977 -1.2223 -2.0929 50 1 3.7467 -2.1389 -1.0883 51 1 2.5981 -1.4187 0.9551 52 1 1.4023 -2.1334 -0.1556 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699459121.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:20 Heat of formation + Delta-G solvation = -69.803582 kcal Electronic energy + Delta-G solvation = -30651.903580 eV Core-core repulsion = 26650.944551 eV Total energy + Delta-G solvation = -4000.959028 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.17207 -38.73315 -37.89448 -36.77072 -34.66669 -33.74170 -32.97241 -31.25333 -31.21216 -30.57803 -28.03940 -26.95398 -26.69897 -24.68209 -23.05351 -22.78399 -21.94458 -20.65616 -19.95606 -19.09518 -18.42584 -17.82161 -17.13824 -16.21913 -16.10183 -15.29872 -15.05852 -14.88437 -14.71875 -14.58631 -14.20291 -14.04958 -13.96066 -13.64740 -13.52162 -13.44711 -13.36876 -12.89580 -12.54844 -12.41979 -12.28799 -12.12673 -12.00502 -11.80129 -11.59528 -11.46863 -11.43515 -11.36132 -11.21433 -11.07041 -10.99889 -10.61907 -10.57602 -10.42279 -10.19102 -10.17952 -9.52820 -9.44406 -9.03986 -8.84462 -8.44776 -7.96222 -7.85232 -6.38723 -3.79517 2.22298 2.86092 3.21428 3.27172 3.31030 3.35185 3.93033 3.99364 4.24996 4.55119 4.67003 4.73907 4.85494 4.97518 5.05196 5.10367 5.15461 5.23579 5.27540 5.31381 5.32833 5.38551 5.43228 5.52678 5.56554 5.63241 5.67007 5.68739 5.75104 5.76163 5.83977 5.90117 5.90872 5.99297 6.04309 6.07491 6.12519 6.16660 6.23732 6.30451 6.36664 6.51620 6.62887 6.69134 6.84710 7.23247 7.34550 7.57258 7.74314 8.08600 8.46648 8.64639 9.20721 9.57548 10.09207 10.79040 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007867 B = 0.003894 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.313059 B = 7188.942838 C = 9490.621879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.096 4.096 5 C -0.103 4.103 6 C 0.520 3.480 7 O -0.548 6.548 8 N -0.705 5.705 9 C 0.146 3.854 10 H 0.085 0.915 11 C -0.160 4.160 12 C 0.043 3.957 13 N -0.514 5.514 14 C 0.023 3.977 15 C 0.044 3.956 16 C 0.446 3.554 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.106 4.106 28 C -0.083 4.083 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.402 0.598 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.015 0.985 43 H 0.056 0.944 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.391 0.609 48 H 0.272 0.728 49 H 0.074 0.926 50 H 0.077 0.923 51 H 0.071 0.929 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.644 6.808 16.754 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.120 4.120 3 C -0.122 4.122 4 C -0.134 4.134 5 C -0.124 4.124 6 C 0.306 3.694 7 O -0.425 6.425 8 N -0.355 5.355 9 C 0.040 3.960 10 H 0.103 0.897 11 C -0.219 4.219 12 C -0.086 4.086 13 N -0.238 5.238 14 C -0.124 4.124 15 C -0.087 4.087 16 C 0.232 3.768 17 O -0.462 6.462 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.200 1.200 27 C -0.144 4.144 28 C -0.120 4.120 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.237 0.763 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.033 0.967 43 H 0.075 0.925 44 H 0.115 0.885 45 H 0.104 0.896 46 H 0.065 0.935 47 H 0.224 0.776 48 H 0.082 0.918 49 H 0.092 0.908 50 H 0.095 0.905 51 H 0.090 0.910 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.908 7.164 16.878 19.594 hybrid contribution 0.091 -0.675 -1.072 1.270 sum 6.998 6.489 15.806 18.464 Atomic orbital electron populations 1.23627 0.95059 1.01757 1.03165 1.22008 0.95121 0.95905 0.98941 1.20830 0.97584 0.94885 0.98893 1.21346 0.96489 0.96453 0.99065 1.21292 0.95041 0.97886 0.98198 1.20580 0.81655 0.81717 0.85430 1.90674 1.73528 1.36362 1.41960 1.45771 1.31121 1.24695 1.33931 1.20915 0.87907 0.94719 0.92413 0.89696 1.22141 0.97800 1.00617 1.01379 1.22498 0.92340 0.92782 1.01018 1.61564 1.32268 1.05821 1.24116 1.22555 1.02035 0.88776 0.99070 1.21935 0.96646 1.01258 0.88869 1.19674 0.87181 0.86129 0.83857 1.90458 1.67330 1.45730 1.42723 1.41861 1.20851 1.46065 1.11288 1.19619 0.97165 1.27710 0.98286 0.88028 1.25246 0.99800 0.97560 0.95273 1.69603 1.40019 1.40841 1.03835 0.85944 0.81569 0.79609 0.77240 1.19902 1.20983 1.19952 1.21520 0.97117 0.96062 0.99704 1.20802 0.97664 0.94902 0.98668 0.88662 0.88449 0.91088 0.91180 0.91109 0.90975 0.89021 0.76328 0.92580 0.91808 0.91873 0.90397 0.93443 0.96651 0.92480 0.88454 0.89583 0.93548 0.77561 0.91841 0.90772 0.90481 0.91024 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.12 13.99 29.01 0.41 -1.71 16 2 C -0.12 -1.31 5.35 -100.51 -0.54 -1.84 16 3 C -0.08 -0.84 6.03 -27.49 -0.17 -1.01 16 4 C -0.10 -1.14 4.54 -26.64 -0.12 -1.26 16 5 C -0.10 -1.20 2.42 -91.82 -0.22 -1.42 16 6 C 0.52 7.41 7.09 -10.98 -0.08 7.33 16 7 O -0.55 -9.80 15.62 5.56 0.09 -9.72 16 8 N -0.70 -8.73 4.69 -53.81 -0.25 -8.99 16 9 C 0.15 1.78 2.55 -67.93 -0.17 1.61 16 10 H 0.09 1.28 6.41 -51.93 -0.33 0.95 16 11 C -0.16 -1.61 9.46 37.16 0.35 -1.26 16 12 C 0.04 0.49 4.54 -3.83 -0.02 0.47 16 13 N -0.51 -7.85 4.16 -244.37 -1.02 -8.86 16 14 C 0.02 0.35 9.19 60.07 0.55 0.90 16 15 C 0.04 0.79 5.28 -4.98 -0.03 0.77 16 16 C 0.45 10.45 7.54 -10.98 -0.08 10.36 16 17 O -0.58 -15.03 13.88 5.55 0.08 -14.95 16 18 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16 19 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 20 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.90 13.05 55.50 0.72 -24.18 16 23 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C -0.11 -1.33 5.14 -26.63 -0.14 -1.46 16 28 C -0.08 -0.90 6.03 -27.48 -0.17 -1.06 16 29 H 0.10 0.91 7.92 -52.49 -0.42 0.49 16 30 H 0.10 1.00 7.92 -52.49 -0.42 0.58 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.65 7.89 -51.93 -0.41 0.24 16 33 H 0.07 0.84 8.00 -51.93 -0.42 0.42 16 34 H 0.07 1.03 8.14 -51.92 -0.42 0.60 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.40 4.38 7.93 -40.82 -0.32 4.06 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 40 H 0.08 0.75 7.75 -51.93 -0.40 0.35 16 41 H 0.05 0.52 8.01 -51.93 -0.42 0.10 16 42 H 0.01 0.21 8.06 -51.93 -0.42 -0.21 16 43 H 0.06 0.69 7.83 -51.93 -0.41 0.28 16 44 H 0.10 1.81 6.01 -51.93 -0.31 1.49 16 45 H 0.09 1.52 6.67 -51.93 -0.35 1.17 16 46 H 0.05 0.77 8.06 -51.93 -0.42 0.35 16 47 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 48 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.08 0.96 7.44 -51.93 -0.39 0.57 16 51 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 52 H 0.07 0.82 7.89 -51.93 -0.41 0.41 16 LS Contribution 414.17 15.07 6.24 6.24 Total: -1.00 -32.18 414.17 -8.92 -41.10 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: -9.04 Total: 15.16 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -0.66 Total: 2.45 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.60 Total: -56.53 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: 0.16 Total: -24.67 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.18 -8.92 -41.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699459121.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.702 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds