Wall clock time and date at job start Tue Mar 31 2020 20:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.51268 * 120.85409 * 2 1 4 4 C 1.53228 * 108.53936 * 231.32756 * 3 2 1 5 5 C 1.52957 * 109.40236 * 305.37511 * 4 3 2 6 6 C 1.50700 * 109.41097 * 183.70463 * 5 4 3 7 7 O 1.21282 * 120.00266 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00094 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00178 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.46945 * 322.90435 * 9 8 6 11 11 C 1.53002 * 109.47221 * 82.90569 * 9 8 6 12 12 C 1.52994 * 109.47025 * 202.90879 * 9 8 6 13 13 N 1.46896 * 109.47374 * 55.13576 * 12 9 8 14 14 C 1.46903 * 110.99966 * 198.96597 * 13 12 9 15 15 C 1.46899 * 110.99926 * 75.01745 * 13 12 9 16 16 C 1.50697 * 109.47291 * 190.00095 * 15 13 12 17 17 O 1.21288 * 120.00067 * 359.97438 * 16 15 13 18 18 N 1.34783 * 120.00194 * 179.97438 * 16 15 13 19 19 C 1.37096 * 119.99985 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00121 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99712 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00159 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99661 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47465 * 59.99654 * 23 21 19 25 25 H 1.48509 * 109.46883 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47099 * 299.99404 * 23 21 19 27 27 C 1.52953 * 109.82037 * 63.59477 * 5 4 3 28 28 C 1.51272 * 120.84736 * 179.97438 * 2 1 3 29 29 H 1.08000 * 119.99763 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99957 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.62631 * 111.60717 * 3 2 1 32 32 H 1.08999 * 109.62268 * 351.04239 * 3 2 1 33 33 H 1.08998 * 109.48107 * 185.38995 * 4 3 2 34 34 H 1.09007 * 109.47991 * 65.35104 * 4 3 2 35 35 H 1.09004 * 109.41455 * 303.55627 * 5 4 3 36 36 H 0.96998 * 119.99438 * 359.97438 * 8 6 5 37 37 H 1.09000 * 109.46913 * 59.99736 * 11 9 8 38 38 H 1.09000 * 109.46804 * 180.02562 * 11 9 8 39 39 H 1.09000 * 109.46852 * 300.00052 * 11 9 8 40 40 H 1.09005 * 109.46836 * 295.13793 * 12 9 8 41 41 H 1.09001 * 109.47130 * 175.14271 * 12 9 8 42 42 H 1.09000 * 109.47532 * 289.97954 * 14 13 12 43 43 H 1.09000 * 109.47201 * 49.97917 * 14 13 12 44 44 H 1.09005 * 109.46801 * 169.97778 * 14 13 12 45 45 H 1.09007 * 109.46781 * 309.99851 * 15 13 12 46 46 H 1.08999 * 109.47577 * 69.99933 * 15 13 12 47 47 H 0.97004 * 119.99836 * 359.97438 * 18 16 15 48 48 H 0.97002 * 120.00382 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.48056 * 56.38300 * 27 5 4 50 50 H 1.09003 * 109.48080 * 176.41900 * 27 5 4 51 51 H 1.08999 * 109.62411 * 248.38797 * 28 2 1 52 52 H 1.09001 * 109.62284 * 8.77052 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0858 1.2986 0.0000 4 6 3.1150 1.2513 -1.1342 5 6 3.9811 -0.0003 -0.9826 6 6 5.0511 -0.0005 -2.0438 7 8 5.1137 0.9104 -2.8421 8 7 5.9386 -1.0130 -2.1057 9 6 6.9792 -1.0129 -3.1370 10 1 6.5717 -0.6103 -4.0642 11 6 8.1531 -0.1461 -2.6770 12 6 7.4639 -2.4448 -3.3724 13 7 6.3173 -3.3022 -3.7010 14 6 6.6438 -4.7196 -3.4950 15 6 5.8574 -3.0623 -5.0753 16 6 4.5444 -3.7683 -5.2961 17 8 4.0415 -4.4087 -4.3971 18 7 3.9289 -3.6881 -6.4925 19 6 2.7347 -4.3308 -6.6934 20 1 2.2870 -4.9010 -5.8930 21 6 2.1005 -4.2485 -7.9270 22 7 2.6451 -3.5542 -8.9008 23 14 0.4730 -5.1236 -8.2006 24 1 -0.5359 -4.6035 -7.2431 25 1 0.0077 -4.8805 -9.5898 26 1 0.6531 -6.5820 -7.9864 27 6 3.1148 -1.2518 -1.1338 28 6 2.0857 -1.2987 0.0006 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 2.5981 1.4190 0.9545 32 1 1.4029 2.1330 -0.1599 33 1 3.7468 2.1383 -1.0890 34 1 2.5978 1.2215 -2.0933 35 1 4.4478 -0.0008 0.0024 36 1 5.8888 -1.7413 -1.4670 37 1 8.5605 -0.5488 -1.7496 38 1 8.9270 -0.1457 -3.4445 39 1 7.8076 0.8740 -2.5093 40 1 7.9492 -2.8170 -2.4701 41 1 8.1750 -2.4565 -4.1985 42 1 7.3560 -5.0426 -4.2543 43 1 7.0825 -4.8514 -2.5059 44 1 5.7350 -5.3166 -3.5719 45 1 5.7252 -1.9918 -5.2325 46 1 6.5978 -3.4441 -5.7782 47 1 4.3309 -3.1756 -7.2113 48 1 2.2022 -3.4964 -9.7619 49 1 2.5977 -1.2223 -2.0929 50 1 3.7467 -2.1389 -1.0883 51 1 2.5981 -1.4187 0.9551 52 1 1.4023 -2.1334 -0.1556 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699459121.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:19 Heat of formation + Delta-G solvation = -91.966845 kcal Electronic energy + Delta-G solvation = -30652.864651 eV Core-core repulsion = 26650.944551 eV Total energy + Delta-G solvation = -4001.920100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.25979 -40.35196 -39.00582 -38.09075 -36.11081 -35.51793 -33.93462 -33.27452 -32.18258 -31.55717 -29.59140 -27.95443 -27.61059 -26.60508 -24.06260 -23.83208 -23.08483 -21.77035 -21.04300 -20.83015 -19.85049 -19.29678 -18.26006 -17.77657 -17.29387 -16.64091 -16.60430 -16.12509 -15.97513 -15.74827 -15.57912 -15.34654 -15.17290 -15.02180 -14.93882 -14.48695 -14.38621 -14.09461 -13.74233 -13.53322 -13.39437 -13.34122 -13.23539 -13.06423 -12.90828 -12.83330 -12.61613 -12.54019 -12.46791 -12.39397 -12.32665 -12.14459 -11.96749 -11.69920 -11.55629 -11.43806 -11.09751 -10.66110 -10.26210 -10.00561 -9.93165 -9.87458 -9.19322 -8.46584 -5.95234 1.37381 1.37933 1.39269 1.50373 1.74263 2.05782 2.26590 2.35471 2.79693 3.20210 3.37819 3.63803 3.73391 3.82233 3.88898 4.08863 4.11688 4.17326 4.20884 4.33140 4.35055 4.39242 4.45386 4.48171 4.50861 4.58759 4.60698 4.66632 4.73171 4.79189 4.82136 4.84307 4.87344 5.01330 5.05084 5.09455 5.13925 5.20555 5.23346 5.25581 5.31324 5.36736 5.39885 5.65441 5.78323 5.88015 6.00078 6.06759 6.22707 6.60014 6.71097 7.12695 7.40129 7.56372 8.11757 8.70997 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.007867 B = 0.003894 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.313059 B = 7188.942838 C = 9490.621879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.077 4.077 4 C -0.093 4.093 5 C -0.095 4.095 6 C 0.511 3.489 7 O -0.592 6.592 8 N -0.696 5.696 9 C 0.143 3.857 10 H 0.050 0.950 11 C -0.150 4.150 12 C 0.049 3.951 13 N -0.527 5.527 14 C 0.029 3.971 15 C 0.058 3.942 16 C 0.444 3.556 17 O -0.606 6.606 18 N -0.579 5.579 19 C -0.330 4.330 20 H 0.081 0.919 21 C -0.015 4.015 22 N -0.924 5.924 23 Si 0.992 3.008 24 H -0.274 1.274 25 H -0.271 1.271 26 H -0.268 1.268 27 C -0.098 4.098 28 C -0.080 4.080 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.036 0.964 35 H 0.128 0.872 36 H 0.412 0.588 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.024 0.976 43 H 0.091 0.909 44 H 0.054 0.946 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.392 0.608 48 H 0.277 0.723 49 H 0.029 0.971 50 H 0.077 0.923 51 H 0.099 0.901 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.072 6.623 18.699 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.132 4.132 3 C -0.114 4.114 4 C -0.131 4.131 5 C -0.116 4.116 6 C 0.299 3.701 7 O -0.473 6.473 8 N -0.346 5.346 9 C 0.038 3.962 10 H 0.068 0.932 11 C -0.208 4.208 12 C -0.079 4.079 13 N -0.251 5.251 14 C -0.119 4.119 15 C -0.073 4.073 16 C 0.231 3.769 17 O -0.491 6.491 18 N -0.216 5.216 19 C -0.459 4.459 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.565 5.565 23 Si 0.815 3.185 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.193 1.193 27 C -0.137 4.137 28 C -0.117 4.117 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.146 0.854 36 H 0.248 0.752 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.129 0.871 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.110 0.890 44 H 0.073 0.927 45 H 0.105 0.895 46 H 0.084 0.916 47 H 0.225 0.775 48 H 0.086 0.914 49 H 0.048 0.952 50 H 0.096 0.904 51 H 0.117 0.883 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.369 6.960 18.842 21.760 hybrid contribution -0.305 -0.629 -1.646 1.789 sum 8.063 6.331 17.196 20.020 Atomic orbital electron populations 1.23784 0.95233 1.02311 1.02893 1.22175 0.95428 0.96369 0.99220 1.20815 0.97076 0.94563 0.98979 1.21291 0.96834 0.96678 0.98307 1.21297 0.94145 0.97121 0.99008 1.21090 0.82146 0.81427 0.85461 1.90652 1.74732 1.38159 1.43732 1.45771 1.30707 1.24316 1.33829 1.20972 0.88474 0.95696 0.91107 0.93155 1.22037 0.96954 0.98926 1.02926 1.22570 0.91084 0.91216 1.02994 1.61481 1.34711 1.06813 1.22113 1.22449 1.00285 0.87758 1.01409 1.21727 0.93893 1.00337 0.91347 1.20689 0.88485 0.85074 0.82609 1.90439 1.68578 1.46711 1.43381 1.41971 1.20783 1.46633 1.12238 1.19610 0.98751 1.29067 0.98478 0.90152 1.26044 1.02867 0.97940 0.94577 1.69677 1.41258 1.41411 1.04157 0.85011 0.77322 0.78598 0.77555 1.19887 1.19583 1.19340 1.21406 0.97395 0.96560 0.98292 1.20798 0.97150 0.94717 0.98999 0.87660 0.88509 0.88620 0.90583 0.91074 0.94467 0.85404 0.75200 0.90243 0.90295 0.93845 0.87104 0.91822 0.95724 0.89017 0.92711 0.89506 0.91642 0.77452 0.91410 0.95239 0.90446 0.88256 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.24 13.99 67.77 0.95 -3.29 16 2 C -0.13 -2.76 5.35 -16.13 -0.09 -2.84 16 3 C -0.08 -1.43 6.03 30.10 0.18 -1.24 16 4 C -0.09 -2.23 4.54 30.66 0.14 -2.09 16 5 C -0.09 -2.14 2.42 -11.57 -0.03 -2.17 16 6 C 0.51 14.66 7.09 87.66 0.62 15.29 16 7 O -0.59 -22.01 15.62 -3.04 -0.05 -22.06 16 8 N -0.70 -16.52 4.69 -442.54 -2.08 -18.60 16 9 C 0.14 3.29 2.55 44.99 0.11 3.41 16 10 H 0.05 1.53 6.41 -2.39 -0.02 1.52 16 11 C -0.15 -2.65 9.46 71.98 0.68 -1.97 16 12 C 0.05 0.98 4.54 86.30 0.39 1.37 16 13 N -0.53 -15.31 4.16 -927.05 -3.86 -19.16 16 14 C 0.03 0.80 9.19 127.69 1.17 1.97 16 15 C 0.06 2.08 5.28 85.56 0.45 2.53 16 16 C 0.44 21.42 7.54 87.65 0.66 22.08 16 17 O -0.61 -32.61 13.88 -3.05 -0.04 -32.65 16 18 N -0.58 -30.74 5.29 -306.98 -1.62 -32.36 16 19 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 20 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 21 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 22 N -0.92 -51.64 13.05 21.66 0.28 -51.35 16 23 Si 0.99 44.01 29.55 68.60 2.03 46.04 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 C -0.10 -2.48 5.14 30.66 0.16 -2.32 16 28 C -0.08 -1.63 6.03 30.11 0.18 -1.45 16 29 H 0.11 1.91 7.92 -2.91 -0.02 1.89 16 30 H 0.10 1.97 7.92 -2.91 -0.02 1.94 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.32 7.89 -2.39 -0.02 1.30 16 33 H 0.07 1.68 8.00 -2.39 -0.02 1.67 16 34 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.13 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.41 8.12 7.93 -92.71 -0.74 7.39 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.04 0.96 8.12 -2.39 -0.02 0.94 16 40 H 0.11 1.57 7.75 -2.38 -0.02 1.55 16 41 H 0.06 1.14 8.01 -2.39 -0.02 1.12 16 42 H 0.02 0.63 8.06 -2.39 -0.02 0.61 16 43 H 0.09 1.90 7.83 -2.39 -0.02 1.88 16 44 H 0.05 2.03 6.01 -2.38 -0.01 2.01 16 45 H 0.09 3.11 6.67 -2.38 -0.02 3.09 16 46 H 0.07 2.10 8.06 -2.39 -0.02 2.08 16 47 H 0.39 20.24 7.90 -92.71 -0.73 19.51 16 48 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 49 H 0.03 0.98 8.14 -2.38 -0.02 0.97 16 50 H 0.08 1.91 7.44 -2.39 -0.02 1.89 16 51 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.07 1.45 7.89 -2.39 -0.02 1.43 16 Total: -1.00 -73.95 414.17 0.98 -72.97 By element: Atomic # 1 Polarization: 47.12 SS G_CDS: -0.55 Total: 46.56 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 6.87 Total: 10.62 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -7.27 Total: -121.48 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -0.09 Total: -54.71 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -73.95 0.98 -72.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699459121.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.000 kcal (2) G-P(sol) polarization free energy of solvation -73.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds