Wall clock time and date at job start Tue Mar 31 2020 20:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47523 * 2 1 4 4 C 1.53002 * 109.47381 * 239.99702 * 2 1 3 5 5 C 1.50703 * 109.46742 * 65.00054 * 4 2 1 6 6 N 1.34784 * 119.99622 * 180.02562 * 5 4 2 7 7 O 1.21275 * 120.00145 * 0.02562 * 5 4 2 8 8 C 1.50704 * 109.46857 * 119.99871 * 2 1 3 9 9 O 1.21279 * 119.99806 * 94.67044 * 8 2 1 10 10 N 1.34771 * 120.00133 * 274.66913 * 8 2 1 11 11 C 1.46930 * 120.63072 * 4.99897 * 10 8 2 12 12 C 1.53621 * 108.53964 * 126.36934 * 11 10 8 13 13 C 1.53047 * 109.24330 * 54.85912 * 12 11 10 14 14 C 1.52999 * 109.44730 * 178.49582 * 13 12 11 15 15 H 1.08991 * 110.88883 * 60.76573 * 14 13 12 16 16 C 1.55155 * 111.00594 * 296.88080 * 14 13 12 17 17 C 1.54378 * 102.92102 * 206.45688 * 16 14 13 18 18 N 1.47020 * 107.28557 * 22.14167 * 17 16 14 19 19 C 1.36938 * 125.64290 * 181.05919 * 18 17 16 20 20 H 1.08004 * 119.99638 * 174.94309 * 19 18 17 21 21 C 1.38802 * 120.00360 * 354.93986 * 19 18 17 22 22 N 1.31619 * 120.00039 * 5.17318 * 21 19 18 23 23 Si 1.86803 * 120.00399 * 185.17169 * 21 19 18 24 24 H 1.48500 * 109.47150 * 94.99653 * 23 21 19 25 25 H 1.48498 * 109.47546 * 214.99906 * 23 21 19 26 26 H 1.48509 * 109.46869 * 334.99995 * 23 21 19 27 27 C 1.47423 * 108.70865 * 1.08810 * 18 17 16 28 28 C 1.53037 * 109.53533 * 298.51098 * 13 12 11 29 29 C 1.46928 * 120.63068 * 185.28664 * 10 8 2 30 30 H 1.08993 * 109.47172 * 174.75390 * 1 2 3 31 31 H 1.09002 * 109.46661 * 294.75706 * 1 2 3 32 32 H 1.09000 * 109.46705 * 54.75236 * 1 2 3 33 33 H 1.09007 * 109.46849 * 305.00719 * 4 2 1 34 34 H 1.08993 * 109.47457 * 185.00429 * 4 2 1 35 35 H 0.96992 * 119.99357 * 180.02562 * 6 5 4 36 36 H 0.97003 * 119.99708 * 359.72945 * 6 5 4 37 37 H 1.08999 * 109.58794 * 246.20170 * 11 10 8 38 38 H 1.08999 * 109.58357 * 6.63301 * 11 10 8 39 39 H 1.08997 * 109.63824 * 294.86915 * 12 11 10 40 40 H 1.08996 * 109.46040 * 174.74391 * 12 11 10 41 41 H 1.09005 * 109.45318 * 58.53095 * 13 12 11 42 42 H 1.09000 * 110.72169 * 324.79102 * 16 14 13 43 43 H 1.09002 * 110.72042 * 88.06458 * 16 14 13 44 44 H 1.08999 * 109.84780 * 262.73089 * 17 16 14 45 45 H 1.08997 * 110.02698 * 141.64775 * 17 16 14 46 46 H 0.97006 * 119.99944 * 180.02562 * 22 21 19 47 47 H 1.08990 * 110.37166 * 217.03493 * 27 18 17 48 48 H 1.09002 * 110.36227 * 94.71022 * 27 18 17 49 49 H 1.08993 * 109.50042 * 301.40656 * 28 13 12 50 50 H 1.09004 * 109.49366 * 181.31299 * 28 13 12 51 51 H 1.08994 * 109.58864 * 353.37214 * 29 10 8 52 52 H 1.09002 * 109.58862 * 113.65877 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 7 1.9846 -0.3920 -3.7002 7 8 1.0118 1.0873 -2.3633 8 6 2.0323 -0.7104 1.2305 9 8 2.3150 -1.8886 1.1775 10 7 2.1673 -0.0365 2.3898 11 6 1.7269 1.3610 2.4990 12 6 0.7699 1.4796 3.6948 13 6 1.4604 0.9388 4.9490 14 6 0.5251 1.0891 6.1504 15 1 -0.3952 0.5250 5.9995 16 6 0.2209 2.5837 6.4348 17 6 -0.0973 2.5899 7.9454 18 7 0.5240 1.3914 8.5276 19 6 0.4575 1.0171 9.8432 20 1 0.8798 0.0743 10.1583 21 6 -0.1525 1.8493 10.7716 22 7 -0.7562 2.9489 10.3732 23 14 -0.1167 1.4087 12.5866 24 1 1.0218 2.1013 13.2417 25 1 -1.3884 1.8343 13.2245 26 1 0.0449 -0.0600 12.7363 27 6 1.2310 0.6596 7.4608 28 6 1.7999 -0.5400 4.7490 29 6 2.7634 -0.6833 3.5667 30 1 -0.3633 -1.0233 -0.0940 31 1 -0.3633 0.4304 0.9333 32 1 -0.3633 0.5931 -0.8393 33 1 1.6053 -1.7199 -1.2951 34 1 3.1263 -0.7996 -1.2055 35 1 1.7283 0.1091 -4.4901 36 1 2.4916 -1.2141 -3.7905 37 1 2.5920 2.0057 2.6544 38 1 1.2100 1.6536 1.5851 39 1 -0.1337 0.9022 3.4995 40 1 0.5069 2.5263 3.8471 41 1 2.3769 1.5006 5.1297 42 1 1.0929 3.2021 6.2221 43 1 -0.6408 2.9186 5.8572 44 1 -1.1764 2.5587 8.0965 45 1 0.3162 3.4848 8.4103 46 1 -1.1822 3.5307 11.0221 47 1 1.1334 -0.4157 7.6094 48 1 2.2824 0.9463 7.4368 49 1 0.8866 -1.0984 4.5437 50 1 2.2706 -0.9305 5.6513 51 1 2.9307 -1.7398 3.3575 52 1 3.7125 -0.2035 3.8059 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699675421.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:33 Heat of formation + Delta-G solvation = -68.772844 kcal Electronic energy + Delta-G solvation = -30076.375019 eV Core-core repulsion = 26075.460687 eV Total energy + Delta-G solvation = -4000.914332 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.81787 -39.74283 -38.43423 -36.62346 -34.62729 -34.10843 -33.62597 -31.74880 -31.17637 -29.14259 -28.32970 -27.71269 -25.43612 -24.54303 -23.39495 -22.93695 -21.26239 -20.43654 -19.84707 -19.48662 -18.83283 -18.09709 -17.46555 -16.81202 -16.69503 -15.89266 -15.76250 -15.33917 -14.94991 -14.55307 -14.42827 -14.28313 -14.00795 -13.82114 -13.72463 -13.50308 -13.05776 -12.76949 -12.70251 -12.39585 -12.28924 -12.13422 -11.97690 -11.72506 -11.55233 -11.41242 -11.29324 -11.03053 -10.98366 -10.85376 -10.68966 -10.50930 -10.34892 -10.13394 -10.06456 -9.90623 -9.78902 -9.69526 -9.66362 -9.53790 -8.72750 -8.54748 -6.76776 -5.67868 -3.00186 2.22142 2.43845 2.72618 3.20443 3.42079 3.47127 3.49183 4.14341 4.38077 4.52686 4.57523 4.66026 4.69937 4.84749 4.87594 5.01332 5.07790 5.21191 5.27196 5.29086 5.33667 5.44389 5.51575 5.55730 5.60474 5.63712 5.71614 5.73235 5.74513 5.85963 5.93257 6.00960 6.02841 6.05838 6.18523 6.22967 6.33738 6.37409 6.46681 6.50210 6.61166 6.65534 6.81614 6.85481 7.05032 7.24939 7.61017 7.69779 7.82764 7.87472 7.99419 8.31426 9.26881 9.87787 10.54935 11.44107 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.033291 B = 0.002009 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.855658 B =13934.525917 C =14479.490608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 H 0.101 0.899 4 C -0.126 4.126 5 C 0.519 3.481 6 N -0.858 5.858 7 O -0.539 6.539 8 C 0.520 3.480 9 O -0.548 6.548 10 N -0.607 5.607 11 C 0.101 3.899 12 C -0.128 4.128 13 C -0.073 4.073 14 C -0.096 4.096 15 H 0.071 0.929 16 C -0.138 4.138 17 C 0.176 3.824 18 N -0.607 5.607 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.921 5.921 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.143 3.857 28 C -0.128 4.128 29 C 0.110 3.890 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.401 0.599 36 H 0.402 0.598 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.039 0.961 45 H 0.043 0.957 46 H 0.251 0.749 47 H 0.034 0.966 48 H 0.016 0.984 49 H 0.065 0.935 50 H 0.079 0.921 51 H 0.090 0.910 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.883 -5.545 -27.616 28.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 H 0.119 0.881 4 C -0.166 4.166 5 C 0.304 3.696 6 N -0.421 5.421 7 O -0.416 6.416 8 C 0.308 3.692 9 O -0.426 6.426 10 N -0.339 5.339 11 C -0.021 4.021 12 C -0.166 4.166 13 C -0.092 4.092 14 C -0.115 4.115 15 H 0.089 0.911 16 C -0.176 4.176 17 C 0.052 3.948 18 N -0.333 5.333 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.569 5.569 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.016 3.984 28 C -0.167 4.167 29 C -0.012 4.012 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.232 0.768 36 H 0.231 0.769 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.034 0.966 49 H 0.084 0.916 50 H 0.098 0.902 51 H 0.108 0.892 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.534 -5.452 -27.141 28.444 hybrid contribution 0.153 -0.299 0.711 0.786 sum 6.687 -5.751 -26.430 27.863 Atomic orbital electron populations 1.21908 0.91871 1.02948 1.03930 1.21026 0.98718 1.00671 0.91213 0.88092 1.21495 1.03409 1.00565 0.91137 1.20662 0.78375 0.85294 0.85253 1.43893 1.60140 1.29762 1.08315 1.90729 1.39632 1.24547 1.86713 1.20571 0.77217 0.86946 0.84428 1.90670 1.51193 1.15643 1.85110 1.48136 1.61081 1.13533 1.11186 1.22015 0.98604 0.81515 1.00004 1.22048 0.98257 1.02389 0.93930 1.21095 0.98763 0.95285 0.94088 1.22348 0.98012 0.97390 0.93795 0.91106 1.22902 0.99876 0.95002 0.99825 1.21142 0.97273 0.90195 0.86232 1.44493 1.59663 1.25000 1.04183 1.19072 1.32097 1.02210 0.82124 0.90547 1.24814 1.00600 0.97116 0.98056 1.69987 1.40319 1.14380 1.32215 0.86125 0.77031 0.77578 0.85211 1.21683 1.21800 1.20674 1.21551 0.94186 0.95239 0.87382 1.21975 0.99757 0.97264 0.97656 1.21670 0.95786 0.99269 0.84427 0.92373 0.91857 0.89524 0.87601 0.88416 0.76829 0.76930 0.91128 0.89407 0.91502 0.90173 0.91032 0.92638 0.92513 0.94239 0.93876 0.93858 0.94750 0.96590 0.91609 0.90211 0.89207 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.55 37.16 0.32 -1.02 16 2 C -0.09 -0.84 1.50 -91.77 -0.14 -0.97 16 3 H 0.10 0.86 6.54 -51.93 -0.34 0.52 16 4 C -0.13 -0.89 4.62 -27.88 -0.13 -1.02 16 5 C 0.52 3.87 7.84 -10.98 -0.09 3.79 16 6 N -0.86 -3.29 8.87 31.22 0.28 -3.02 16 7 O -0.54 -6.00 14.81 5.56 0.08 -5.92 16 8 C 0.52 5.84 6.80 -10.99 -0.07 5.76 16 9 O -0.55 -7.74 15.62 5.56 0.09 -7.65 16 10 N -0.61 -6.43 2.97 -172.50 -0.51 -6.94 16 11 C 0.10 0.92 5.95 -3.49 -0.02 0.90 16 12 C -0.13 -1.36 5.21 -26.38 -0.14 -1.49 16 13 C -0.07 -0.92 1.65 -90.58 -0.15 -1.07 16 14 C -0.10 -1.59 2.56 -88.47 -0.23 -1.82 16 15 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 16 C -0.14 -2.49 5.42 -24.87 -0.13 -2.63 16 17 C 0.18 4.32 5.38 -3.04 -0.02 4.30 16 18 N -0.61 -15.71 3.39 -170.04 -0.58 -16.28 16 19 C -0.23 -6.43 10.27 -15.06 -0.15 -6.58 16 20 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 21 C -0.01 -0.28 5.48 -17.43 -0.10 -0.38 16 22 N -0.92 -27.49 10.34 55.49 0.57 -26.91 16 23 Si 0.91 22.41 29.56 -169.99 -5.02 17.39 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.14 2.91 5.80 -2.53 -0.01 2.90 16 28 C -0.13 -1.54 5.21 -26.61 -0.14 -1.68 16 29 C 0.11 1.22 6.44 -3.71 -0.02 1.19 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.56 7.20 -51.93 -0.37 0.19 16 32 H 0.09 0.83 6.07 -51.93 -0.32 0.52 16 33 H 0.11 0.73 8.03 -51.93 -0.42 0.31 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.40 1.24 8.93 -40.82 -0.36 0.87 16 36 H 0.40 0.47 8.83 -40.82 -0.36 0.11 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.69 4.89 -51.93 -0.25 0.44 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.83 7.32 -51.93 -0.38 0.45 16 41 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16 42 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 43 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 44 H 0.04 1.07 7.53 -51.93 -0.39 0.68 16 45 H 0.04 1.17 7.36 -51.93 -0.38 0.79 16 46 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.03 0.69 8.02 -51.93 -0.42 0.28 16 48 H 0.02 0.33 8.03 -51.93 -0.42 -0.09 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.08 0.98 7.32 -51.93 -0.38 0.60 16 51 H 0.09 1.08 7.00 -51.93 -0.36 0.71 16 52 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 396.05 15.07 5.97 5.97 Total: -1.00 -35.05 396.05 -9.27 -44.32 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -8.92 Total: -1.13 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.22 Total: 0.17 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.24 Total: -53.15 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.17 Total: -13.57 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.05 -9.27 -44.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699675421.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.457 kcal (2) G-P(sol) polarization free energy of solvation -35.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds