Wall clock time and date at job start Tue Mar 31 2020 20:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47337 * 2 1 4 4 C 1.53006 * 109.47055 * 120.00163 * 2 1 3 5 5 C 1.50698 * 109.46492 * 294.99949 * 4 2 1 6 6 O 1.21282 * 120.00824 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99610 * 179.97438 * 5 4 2 8 8 C 1.47745 * 125.82385 * 4.98934 * 7 5 4 9 9 C 1.54908 * 104.84462 * 155.82821 * 8 7 5 10 10 C 1.55159 * 101.57819 * 37.09358 * 9 8 7 11 11 C 1.47020 * 125.65169 * 185.08172 * 7 5 4 12 12 H 1.09002 * 109.88326 * 300.59898 * 11 7 5 13 13 C 1.53004 * 109.88275 * 61.60781 * 11 7 5 14 14 N 1.46898 * 109.47293 * 183.28579 * 13 11 7 15 15 C 1.46904 * 111.00068 * 175.08773 * 14 13 11 16 16 C 1.50694 * 109.47035 * 179.97438 * 15 14 13 17 17 O 1.21291 * 120.00399 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99797 * 180.27620 * 16 15 14 19 19 C 1.37097 * 119.99989 * 179.72540 * 18 16 15 20 20 H 1.08009 * 120.00124 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00261 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99943 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00259 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47076 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46872 * 120.00045 * 23 21 19 26 26 H 1.48496 * 109.47182 * 239.99875 * 23 21 19 27 27 C 1.52996 * 109.47455 * 240.00081 * 2 1 3 28 28 C 1.53000 * 117.50305 * 128.62368 * 27 2 1 29 29 C 1.52998 * 117.50013 * 60.00016 * 27 2 1 30 30 H 1.08990 * 109.47436 * 300.00310 * 1 2 3 31 31 H 1.09008 * 109.47016 * 60.00472 * 1 2 3 32 32 H 1.09002 * 109.47070 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46894 * 175.00272 * 4 2 1 34 34 H 1.08993 * 109.46930 * 55.00089 * 4 2 1 35 35 H 1.09008 * 110.28739 * 37.02360 * 8 7 5 36 36 H 1.09000 * 110.53055 * 274.75814 * 8 7 5 37 37 H 1.08998 * 111.00344 * 279.02280 * 9 8 7 38 38 H 1.09004 * 111.03624 * 155.18293 * 9 8 7 39 39 H 1.09000 * 110.71864 * 206.13001 * 10 9 8 40 40 H 1.09002 * 110.71736 * 82.86481 * 10 9 8 41 41 H 1.08999 * 109.47110 * 63.27731 * 13 11 7 42 42 H 1.09011 * 109.46766 * 303.28414 * 13 11 7 43 43 H 1.00890 * 111.00395 * 51.13027 * 14 13 11 44 44 H 1.09001 * 109.47011 * 59.99337 * 15 14 13 45 45 H 1.08999 * 109.46538 * 299.99766 * 15 14 13 46 46 H 0.96997 * 120.00207 * 359.72236 * 18 16 15 47 47 H 0.97003 * 120.00363 * 180.02562 * 22 21 19 48 48 H 1.09004 * 115.55095 * 274.33105 * 27 2 1 49 49 H 1.09004 * 117.49534 * 359.97438 * 28 27 2 50 50 H 1.08998 * 117.50322 * 145.01868 * 28 27 2 51 51 H 1.09000 * 117.50151 * 214.98220 * 29 27 2 52 52 H 1.08996 * 117.49817 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4765 6 8 1.0108 1.0870 2.3633 7 7 1.9843 -0.3919 3.7002 8 6 2.8334 -1.5673 3.9833 9 6 3.4216 -1.3021 5.3916 10 6 2.2238 -0.6224 6.1063 11 6 1.5736 0.2065 4.9787 12 1 1.9178 1.2393 5.0322 13 6 0.0499 0.1585 5.1101 14 7 -0.3557 0.8284 6.3529 15 6 -1.8191 0.9047 6.4563 16 6 -2.1965 1.5958 7.7412 17 8 -1.3316 1.9860 8.4967 18 7 -3.4953 1.7750 8.0537 19 6 -3.8387 2.3988 9.2252 20 1 -3.0684 2.7462 9.8980 21 6 -5.1776 2.5840 9.5472 22 7 -6.1147 2.1617 8.7285 23 14 -5.6455 3.4332 11.1439 24 1 -4.4141 3.8108 11.8830 25 1 -6.4351 4.6542 10.8421 26 1 -6.4592 2.5104 11.9754 27 6 2.0400 -0.7212 -1.2492 28 6 3.0742 0.0052 -2.1116 29 6 1.6358 -0.1495 -2.6096 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1263 -0.7995 1.2056 34 1 1.6054 -1.7198 1.2951 35 1 3.6330 -1.6423 3.2462 36 1 2.2356 -2.4787 3.9873 37 1 4.2772 -0.6290 5.3372 38 1 3.6922 -2.2357 5.8848 39 1 2.5720 0.0262 6.9102 40 1 1.5272 -1.3696 6.4866 41 1 -0.2803 -0.8800 5.1324 42 1 -0.4042 0.6660 4.2588 43 1 0.0599 1.7451 6.4220 44 1 -2.2369 -0.1020 6.4493 45 1 -2.2141 1.4678 5.6108 46 1 -4.1870 1.4627 7.4497 47 1 -7.0494 2.2913 8.9530 48 1 2.1268 -1.8045 -1.1642 49 1 3.3909 0.9971 -1.7892 50 1 3.8417 -0.6001 -2.5940 51 1 1.4570 -0.8565 -3.4196 52 1 1.0062 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699766652.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:50 Heat of formation + Delta-G solvation = -56.634544 kcal Electronic energy + Delta-G solvation = -29162.491958 eV Core-core repulsion = 25162.103982 eV Total energy + Delta-G solvation = -4000.387976 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.54689 -38.69892 -38.16862 -37.44186 -35.21718 -33.80279 -33.42722 -31.85912 -31.20830 -30.26961 -27.95990 -26.76131 -24.88315 -24.27341 -23.21797 -22.60943 -22.42168 -21.08353 -20.04285 -19.42049 -18.86960 -17.83853 -17.30827 -16.81386 -16.06046 -15.83207 -15.54696 -15.19022 -15.13314 -14.70461 -14.41051 -14.11211 -13.83541 -13.82658 -13.56756 -13.45527 -13.34923 -13.16929 -12.99155 -12.47033 -12.27983 -12.14116 -11.93133 -11.72238 -11.63914 -11.57632 -11.47558 -11.45905 -11.29059 -11.06681 -11.02798 -10.84914 -10.81834 -10.63487 -10.31864 -10.24428 -10.19298 -9.81178 -9.48600 -8.84146 -8.39483 -8.00553 -7.91899 -6.38280 -3.79028 2.47321 2.71740 3.18803 3.28970 3.36501 3.44670 3.95275 4.07267 4.17697 4.31423 4.33872 4.48763 4.50646 4.57509 4.67184 4.68762 4.83613 4.94119 4.96269 5.06336 5.13938 5.19489 5.22961 5.26716 5.29012 5.30974 5.37622 5.41692 5.53197 5.55613 5.58851 5.64341 5.65614 5.77575 5.81521 5.84197 5.88117 5.92121 5.96498 6.04440 6.10846 6.18964 6.22489 6.27824 6.33775 7.22437 7.36350 7.58612 7.69587 8.03343 8.10167 8.65087 9.21398 9.58345 10.09804 10.79628 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.002001 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.771067 B =13989.367878 C =15425.279447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.044 4.044 3 H 0.078 0.922 4 C -0.128 4.128 5 C 0.527 3.473 6 O -0.531 6.531 7 N -0.617 5.617 8 C 0.100 3.900 9 C -0.137 4.137 10 C -0.114 4.114 11 C 0.139 3.861 12 H 0.075 0.925 13 C 0.051 3.949 14 N -0.663 5.663 15 C 0.052 3.948 16 C 0.443 3.557 17 O -0.583 6.583 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.149 4.149 28 C -0.182 4.182 29 C -0.178 4.178 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.040 0.960 43 H 0.349 0.651 44 H 0.085 0.915 45 H 0.044 0.956 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.103 0.897 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.092 0.908 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.020 -11.316 -19.973 29.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.063 4.063 3 H 0.096 0.904 4 C -0.168 4.168 5 C 0.316 3.684 6 O -0.408 6.408 7 N -0.352 5.352 8 C -0.023 4.023 9 C -0.175 4.175 10 C -0.152 4.152 11 C 0.035 3.965 12 H 0.093 0.907 13 C -0.080 4.080 14 N -0.296 5.296 15 C -0.081 4.081 16 C 0.228 3.772 17 O -0.467 6.467 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.181 4.181 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.167 4.167 28 C -0.219 4.219 29 C -0.215 4.215 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.168 0.832 44 H 0.103 0.897 45 H 0.062 0.938 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.121 0.879 49 H 0.112 0.888 50 H 0.110 0.890 51 H 0.111 0.889 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 19.074 -11.018 -19.210 29.227 hybrid contribution -0.997 0.724 -0.331 1.276 sum 18.077 -10.294 -19.541 28.541 Atomic orbital electron populations 1.21928 0.94206 1.01570 1.03116 1.20468 0.96568 0.98899 0.90396 0.90373 1.21699 1.02713 1.00128 0.92297 1.20387 0.79252 0.85435 0.83310 1.90702 1.40089 1.24137 1.85839 1.48703 1.51004 1.30226 1.05307 1.22392 0.93667 0.88618 0.97622 1.22834 0.98397 1.01714 0.94568 1.22594 0.96390 0.99608 0.96596 1.21525 0.94482 0.97985 0.82478 0.90717 1.22267 0.94183 0.99895 0.91651 1.60082 1.07904 1.27001 1.34589 1.21654 0.88669 1.00981 0.96760 1.19799 0.83567 0.85312 0.88491 1.90513 1.48877 1.54988 1.52336 1.41870 1.05312 1.52209 1.20765 1.19758 0.92320 1.33309 0.97355 0.87858 1.25268 0.95370 0.98005 0.99419 1.69625 1.00693 1.47052 1.36993 0.85797 0.78653 0.78659 0.81209 1.19224 1.20802 1.20767 1.22351 1.03674 0.99041 0.91666 1.23037 0.92535 1.02091 1.04258 1.22926 0.98034 1.03427 0.97075 0.90550 0.92824 0.93269 0.89058 0.88926 0.90730 0.91171 0.90736 0.89749 0.89502 0.89766 0.91240 0.94176 0.83236 0.89719 0.93843 0.77462 0.91959 0.87853 0.88794 0.88982 0.88923 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.77 37.16 0.33 -1.14 16 2 C -0.04 -0.38 2.19 -90.62 -0.20 -0.58 16 3 H 0.08 0.79 7.71 -51.93 -0.40 0.39 16 4 C -0.13 -0.99 4.26 -27.88 -0.12 -1.10 16 5 C 0.53 5.94 7.30 -10.99 -0.08 5.86 16 6 O -0.53 -8.02 13.15 5.56 0.07 -7.95 16 7 N -0.62 -6.26 3.08 -162.76 -0.50 -6.76 16 8 C 0.10 0.67 6.67 -2.35 -0.02 0.66 16 9 C -0.14 -0.94 7.09 -24.58 -0.17 -1.11 16 10 C -0.11 -1.13 6.24 -24.90 -0.16 -1.28 16 11 C 0.14 1.65 2.98 -66.96 -0.20 1.45 16 12 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 13 C 0.05 0.71 5.08 -3.82 -0.02 0.69 16 14 N -0.66 -11.27 5.91 -115.05 -0.68 -11.95 16 15 C 0.05 0.98 6.16 -4.98 -0.03 0.95 16 16 C 0.44 10.81 7.82 -10.99 -0.09 10.72 16 17 O -0.58 -16.15 15.78 5.55 0.09 -16.06 16 18 N -0.56 -14.76 5.29 -10.96 -0.06 -14.81 16 19 C -0.30 -8.49 9.68 -14.94 -0.14 -8.64 16 20 H 0.10 3.08 7.16 -52.48 -0.38 2.71 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -25.06 13.05 55.50 0.72 -24.33 16 23 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C -0.15 -1.01 5.15 -90.62 -0.47 -1.48 16 28 C -0.18 -1.16 10.18 -26.73 -0.27 -1.43 16 29 C -0.18 -1.18 9.73 -26.73 -0.26 -1.44 16 30 H 0.08 0.95 5.95 -51.93 -0.31 0.64 16 31 H 0.05 0.49 7.29 -51.92 -0.38 0.11 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.54 7.78 -51.93 -0.40 0.14 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.36 7.53 -51.92 -0.39 -0.03 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.90 7.80 -51.93 -0.40 0.49 16 41 H 0.07 0.94 8.07 -51.93 -0.42 0.53 16 42 H 0.04 0.64 6.91 -51.92 -0.36 0.28 16 43 H 0.35 6.22 8.36 -39.30 -0.33 5.89 16 44 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.39 9.83 7.90 -40.82 -0.32 9.51 16 47 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.10 0.61 8.11 -51.93 -0.42 0.18 16 49 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 50 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.09 0.67 7.61 -51.93 -0.39 0.28 16 LS Contribution 416.03 15.07 6.27 6.27 Total: -1.00 -33.14 416.03 -10.21 -43.35 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -9.11 Total: 13.25 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.99 Total: 2.60 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.51 Total: -57.86 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: 0.16 Total: -24.01 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.14 -10.21 -43.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699766652.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.280 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds