Wall clock time and date at job start Tue Mar 31 2020 20:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47337 * 2 1 4 4 C 1.53006 * 109.47055 * 120.00163 * 2 1 3 5 5 C 1.50698 * 109.46492 * 294.99949 * 4 2 1 6 6 O 1.21282 * 120.00824 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99610 * 179.97438 * 5 4 2 8 8 C 1.47745 * 125.82385 * 4.98934 * 7 5 4 9 9 C 1.54908 * 104.84462 * 155.82821 * 8 7 5 10 10 C 1.55159 * 101.57819 * 37.09358 * 9 8 7 11 11 C 1.47020 * 125.65169 * 185.08172 * 7 5 4 12 12 H 1.09002 * 109.88326 * 300.59898 * 11 7 5 13 13 C 1.53004 * 109.88275 * 61.60781 * 11 7 5 14 14 N 1.46898 * 109.47293 * 183.28579 * 13 11 7 15 15 C 1.46904 * 111.00068 * 175.08773 * 14 13 11 16 16 C 1.50694 * 109.47035 * 179.97438 * 15 14 13 17 17 O 1.21291 * 120.00399 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99797 * 180.27620 * 16 15 14 19 19 C 1.37097 * 119.99989 * 179.72540 * 18 16 15 20 20 H 1.08009 * 120.00124 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00261 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99943 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00259 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47076 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46872 * 120.00045 * 23 21 19 26 26 H 1.48496 * 109.47182 * 239.99875 * 23 21 19 27 27 C 1.52996 * 109.47455 * 240.00081 * 2 1 3 28 28 C 1.53000 * 117.50305 * 128.62368 * 27 2 1 29 29 C 1.52998 * 117.50013 * 60.00016 * 27 2 1 30 30 H 1.08990 * 109.47436 * 300.00310 * 1 2 3 31 31 H 1.09008 * 109.47016 * 60.00472 * 1 2 3 32 32 H 1.09002 * 109.47070 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46894 * 175.00272 * 4 2 1 34 34 H 1.08993 * 109.46930 * 55.00089 * 4 2 1 35 35 H 1.09008 * 110.28739 * 37.02360 * 8 7 5 36 36 H 1.09000 * 110.53055 * 274.75814 * 8 7 5 37 37 H 1.08998 * 111.00344 * 279.02280 * 9 8 7 38 38 H 1.09004 * 111.03624 * 155.18293 * 9 8 7 39 39 H 1.09000 * 110.71864 * 206.13001 * 10 9 8 40 40 H 1.09002 * 110.71736 * 82.86481 * 10 9 8 41 41 H 1.08999 * 109.47110 * 63.27731 * 13 11 7 42 42 H 1.09011 * 109.46766 * 303.28414 * 13 11 7 43 43 H 1.00890 * 111.00395 * 51.13027 * 14 13 11 44 44 H 1.09001 * 109.47011 * 59.99337 * 15 14 13 45 45 H 1.08999 * 109.46538 * 299.99766 * 15 14 13 46 46 H 0.96997 * 120.00207 * 359.72236 * 18 16 15 47 47 H 0.97003 * 120.00363 * 180.02562 * 22 21 19 48 48 H 1.09004 * 115.55095 * 274.33105 * 27 2 1 49 49 H 1.09004 * 117.49534 * 359.97438 * 28 27 2 50 50 H 1.08998 * 117.50322 * 145.01868 * 28 27 2 51 51 H 1.09000 * 117.50151 * 214.98220 * 29 27 2 52 52 H 1.08996 * 117.49817 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4765 6 8 1.0108 1.0870 2.3633 7 7 1.9843 -0.3919 3.7002 8 6 2.8334 -1.5673 3.9833 9 6 3.4216 -1.3021 5.3916 10 6 2.2238 -0.6224 6.1063 11 6 1.5736 0.2065 4.9787 12 1 1.9178 1.2393 5.0322 13 6 0.0499 0.1585 5.1101 14 7 -0.3557 0.8284 6.3529 15 6 -1.8191 0.9047 6.4563 16 6 -2.1965 1.5958 7.7412 17 8 -1.3316 1.9860 8.4967 18 7 -3.4953 1.7750 8.0537 19 6 -3.8387 2.3988 9.2252 20 1 -3.0684 2.7462 9.8980 21 6 -5.1776 2.5840 9.5472 22 7 -6.1147 2.1617 8.7285 23 14 -5.6455 3.4332 11.1439 24 1 -4.4141 3.8108 11.8830 25 1 -6.4351 4.6542 10.8421 26 1 -6.4592 2.5104 11.9754 27 6 2.0400 -0.7212 -1.2492 28 6 3.0742 0.0052 -2.1116 29 6 1.6358 -0.1495 -2.6096 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1263 -0.7995 1.2056 34 1 1.6054 -1.7198 1.2951 35 1 3.6330 -1.6423 3.2462 36 1 2.2356 -2.4787 3.9873 37 1 4.2772 -0.6290 5.3372 38 1 3.6922 -2.2357 5.8848 39 1 2.5720 0.0262 6.9102 40 1 1.5272 -1.3696 6.4866 41 1 -0.2803 -0.8800 5.1324 42 1 -0.4042 0.6660 4.2588 43 1 0.0599 1.7451 6.4220 44 1 -2.2369 -0.1020 6.4493 45 1 -2.2141 1.4678 5.6108 46 1 -4.1870 1.4627 7.4497 47 1 -7.0494 2.2913 8.9530 48 1 2.1268 -1.8045 -1.1642 49 1 3.3909 0.9971 -1.7892 50 1 3.8417 -0.6001 -2.5940 51 1 1.4570 -0.8565 -3.4196 52 1 1.0062 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699766652.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:49 Heat of formation + Delta-G solvation = -78.649584 kcal Electronic energy + Delta-G solvation = -29163.446602 eV Core-core repulsion = 25162.103982 eV Total energy + Delta-G solvation = -4001.342620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.38229 -40.19367 -39.30288 -38.24162 -36.63743 -35.81209 -34.13042 -33.30740 -32.63315 -31.35081 -28.77434 -28.17995 -26.39526 -25.24667 -24.38197 -23.25386 -23.08905 -21.85739 -21.21603 -20.64878 -20.05098 -19.73713 -18.15154 -17.98347 -17.31920 -16.95717 -16.57518 -16.43907 -16.23881 -15.95949 -15.84138 -15.36847 -15.18697 -14.90422 -14.73830 -14.48787 -14.23253 -14.04554 -13.88287 -13.72895 -13.51428 -13.26268 -13.22575 -12.98243 -12.87441 -12.67763 -12.44302 -12.42809 -12.28354 -12.12091 -12.10605 -11.92898 -11.82180 -11.71888 -11.57595 -11.53804 -11.17470 -10.80029 -10.68006 -10.40618 -10.04763 -9.66271 -9.44465 -8.48900 -5.98249 1.35432 1.40555 1.55428 1.63829 1.92033 2.00485 2.28079 2.90334 2.94496 3.17637 3.40451 3.53302 3.70403 3.71644 3.80734 3.89745 4.02877 4.08689 4.20347 4.22863 4.26800 4.31813 4.37169 4.40032 4.46680 4.49500 4.51174 4.61363 4.66935 4.72349 4.73950 4.82527 4.84533 4.92122 5.00734 5.05574 5.07530 5.07710 5.18133 5.23381 5.30005 5.35770 5.38966 5.41605 5.45886 5.50637 5.78799 6.02184 6.24075 6.56308 6.57991 7.09264 7.20299 7.51814 8.06551 8.68873 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.002001 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.771067 B =13989.367878 C =15425.279447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.042 4.042 3 H 0.054 0.946 4 C -0.118 4.118 5 C 0.518 3.482 6 O -0.580 6.580 7 N -0.616 5.616 8 C 0.096 3.904 9 C -0.127 4.127 10 C -0.112 4.112 11 C 0.139 3.861 12 H 0.052 0.948 13 C 0.061 3.939 14 N -0.666 5.666 15 C 0.066 3.934 16 C 0.440 3.560 17 O -0.620 6.620 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.081 0.919 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.996 3.004 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.269 1.269 27 C -0.145 4.145 28 C -0.179 4.179 29 C -0.185 4.185 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.020 0.980 43 H 0.341 0.659 44 H 0.105 0.895 45 H 0.055 0.945 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.123 0.877 49 H 0.085 0.915 50 H 0.108 0.892 51 H 0.104 0.896 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.184 -13.669 -20.819 32.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.061 4.061 3 H 0.072 0.928 4 C -0.158 4.158 5 C 0.309 3.691 6 O -0.461 6.461 7 N -0.350 5.350 8 C -0.025 4.025 9 C -0.164 4.164 10 C -0.151 4.151 11 C 0.035 3.965 12 H 0.070 0.930 13 C -0.069 4.069 14 N -0.298 5.298 15 C -0.067 4.067 16 C 0.227 3.773 17 O -0.506 6.506 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.099 0.901 21 C -0.215 4.215 22 N -0.562 5.562 23 Si 0.820 3.180 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.194 1.194 27 C -0.163 4.163 28 C -0.216 4.216 29 C -0.222 4.222 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.126 0.874 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.038 0.962 43 H 0.159 0.841 44 H 0.123 0.877 45 H 0.072 0.928 46 H 0.230 0.770 47 H 0.088 0.912 48 H 0.141 0.859 49 H 0.104 0.896 50 H 0.126 0.874 51 H 0.123 0.877 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 20.249 -13.418 -20.080 31.516 hybrid contribution -1.361 1.477 -0.093 2.010 sum 18.889 -11.941 -20.173 30.105 Atomic orbital electron populations 1.21866 0.95469 1.01734 1.01427 1.20388 0.95487 0.98169 0.92060 0.92780 1.21718 1.04324 1.00124 0.89588 1.21144 0.78441 0.85095 0.84464 1.90689 1.42322 1.26450 1.86590 1.48818 1.50949 1.30980 1.04284 1.22692 0.94115 0.87522 0.98188 1.22837 0.96903 1.02433 0.94276 1.22526 0.97651 0.99140 0.95734 1.21393 0.92912 0.97645 0.84552 0.92998 1.22236 0.95868 0.99484 0.89309 1.60109 1.06633 1.26664 1.36395 1.21514 0.90037 1.01370 0.93747 1.20710 0.82614 0.84275 0.89676 1.90481 1.49706 1.56333 1.54068 1.41935 1.06090 1.52480 1.20464 1.19736 0.92625 1.35511 0.98505 0.90149 1.26104 0.94726 0.98006 1.02617 1.69687 1.01186 1.47034 1.38289 0.84823 0.78137 0.77976 0.77087 1.19689 1.19634 1.19405 1.22313 1.03754 0.99749 0.90533 1.23085 0.92680 1.01948 1.03913 1.22981 0.98275 1.03395 0.97573 0.93738 0.93000 0.92064 0.86453 0.86612 0.87865 0.89559 0.90410 0.87432 0.90640 0.90307 0.90229 0.96196 0.84096 0.87657 0.92751 0.77049 0.91248 0.85932 0.89604 0.87404 0.87721 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.77 71.98 0.63 -2.26 16 2 C -0.04 -0.68 2.19 -10.79 -0.02 -0.70 16 3 H 0.05 1.13 7.71 -2.38 -0.02 1.11 16 4 C -0.12 -1.54 4.26 29.85 0.13 -1.41 16 5 C 0.52 11.37 7.30 87.66 0.64 12.01 16 6 O -0.58 -18.39 13.15 -3.04 -0.04 -18.43 16 7 N -0.62 -11.71 3.08 -787.24 -2.42 -14.13 16 8 C 0.10 0.96 6.67 86.79 0.58 1.54 16 9 C -0.13 -1.38 7.09 31.99 0.23 -1.15 16 10 C -0.11 -2.13 6.24 31.78 0.20 -1.93 16 11 C 0.14 3.32 2.98 45.34 0.14 3.45 16 12 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 13 C 0.06 1.74 5.08 86.30 0.44 2.18 16 14 N -0.67 -23.15 5.91 -517.92 -3.06 -26.21 16 15 C 0.07 2.51 6.16 85.55 0.53 3.03 16 16 C 0.44 22.04 7.82 87.65 0.69 22.73 16 17 O -0.62 -35.49 15.78 -3.06 -0.05 -35.54 16 18 N -0.57 -30.67 5.29 -306.99 -1.62 -32.29 16 19 C -0.33 -19.54 9.68 84.04 0.81 -18.73 16 20 H 0.08 4.99 7.16 -2.91 -0.02 4.97 16 21 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 22 N -0.92 -50.96 13.05 21.66 0.28 -50.67 16 23 Si 1.00 43.82 29.55 68.60 2.03 45.85 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 C -0.15 -1.65 5.15 -10.80 -0.06 -1.71 16 28 C -0.18 -1.95 10.18 30.59 0.31 -1.64 16 29 C -0.19 -2.21 9.73 30.59 0.30 -1.92 16 30 H 0.04 1.17 5.95 -2.39 -0.01 1.15 16 31 H 0.05 0.98 7.29 -2.38 -0.02 0.97 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.12 0.95 7.78 -2.39 -0.02 0.93 16 34 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.10 0.51 7.53 -2.38 -0.02 0.49 16 36 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.08 1.59 7.80 -2.39 -0.02 1.57 16 41 H 0.08 2.10 8.07 -2.39 -0.02 2.08 16 42 H 0.02 0.65 6.91 -2.38 -0.02 0.64 16 43 H 0.34 12.75 8.36 -89.70 -0.75 12.00 16 44 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 45 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.40 20.24 7.90 -92.71 -0.73 19.51 16 47 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 48 H 0.12 0.97 8.11 -2.38 -0.02 0.95 16 49 H 0.09 1.07 8.05 -2.39 -0.02 1.05 16 50 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.08 1.18 7.61 -2.39 -0.02 1.16 16 Total: -1.00 -74.83 416.03 0.55 -74.28 By element: Atomic # 1 Polarization: 44.55 SS G_CDS: -0.56 Total: 43.99 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 6.00 Total: 13.15 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -6.82 Total: -123.31 kcal Atomic # 8 Polarization: -53.88 SS G_CDS: -0.09 Total: -53.97 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -74.83 0.55 -74.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699766652.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.368 kcal (2) G-P(sol) polarization free energy of solvation -74.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds