Wall clock time and date at job start Tue Mar 31 2020 20:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47189 * 2 1 4 4 C 1.53006 * 109.47148 * 239.99882 * 2 1 3 5 5 C 1.50698 * 109.46492 * 65.00140 * 4 2 1 6 6 O 1.21282 * 120.00824 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99610 * 179.97438 * 5 4 2 8 8 C 1.47745 * 125.82385 * 4.98934 * 7 5 4 9 9 C 1.54908 * 104.84462 * 155.82821 * 8 7 5 10 10 C 1.55159 * 101.57819 * 37.09358 * 9 8 7 11 11 C 1.47020 * 125.65169 * 185.08172 * 7 5 4 12 12 H 1.09002 * 109.88326 * 300.59898 * 11 7 5 13 13 C 1.53004 * 109.88275 * 61.60781 * 11 7 5 14 14 N 1.46898 * 109.47293 * 183.28579 * 13 11 7 15 15 C 1.46904 * 111.00068 * 175.08773 * 14 13 11 16 16 C 1.50694 * 109.47035 * 179.97438 * 15 14 13 17 17 O 1.21291 * 120.00399 * 359.97438 * 16 15 14 18 18 N 1.34781 * 120.00133 * 180.27331 * 16 15 14 19 19 C 1.37097 * 120.00324 * 179.72539 * 18 16 15 20 20 H 1.07995 * 119.99997 * 359.97438 * 19 18 16 21 21 C 1.38943 * 119.99935 * 180.02562 * 19 18 16 22 22 N 1.31415 * 119.99864 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 120.00131 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46822 * 90.00464 * 23 21 19 25 25 H 1.48500 * 109.47227 * 210.00190 * 23 21 19 26 26 H 1.48498 * 109.47125 * 330.00394 * 23 21 19 27 27 C 1.53002 * 109.46636 * 120.00310 * 2 1 3 28 28 C 1.53002 * 117.49885 * 248.74154 * 27 2 1 29 29 C 1.53005 * 117.49331 * 180.08491 * 27 2 1 30 30 H 1.08994 * 109.47064 * 300.00185 * 1 2 3 31 31 H 1.09003 * 109.47047 * 59.99465 * 1 2 3 32 32 H 1.08996 * 109.47646 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46894 * 305.00464 * 4 2 1 34 34 H 1.08993 * 109.46930 * 185.00281 * 4 2 1 35 35 H 1.09008 * 110.28739 * 37.02360 * 8 7 5 36 36 H 1.09000 * 110.53055 * 274.75814 * 8 7 5 37 37 H 1.08998 * 111.00344 * 279.02280 * 9 8 7 38 38 H 1.09004 * 111.03624 * 155.18293 * 9 8 7 39 39 H 1.09000 * 110.71864 * 206.13001 * 10 9 8 40 40 H 1.09002 * 110.71736 * 82.86481 * 10 9 8 41 41 H 1.08999 * 109.47110 * 63.27731 * 13 11 7 42 42 H 1.09011 * 109.46766 * 303.28414 * 13 11 7 43 43 H 1.00890 * 111.00395 * 51.13027 * 14 13 11 44 44 H 1.09001 * 109.47011 * 59.99337 * 15 14 13 45 45 H 1.08999 * 109.46538 * 299.99766 * 15 14 13 46 46 H 0.97003 * 119.99557 * 359.72931 * 18 16 15 47 47 H 0.97003 * 119.99769 * 179.97438 * 22 21 19 48 48 H 1.08998 * 115.55525 * 34.42016 * 27 2 1 49 49 H 1.09005 * 117.49454 * 0.02562 * 28 27 2 50 50 H 1.08994 * 117.49968 * 145.01829 * 28 27 2 51 51 H 1.09000 * 117.49556 * 214.97946 * 29 27 2 52 52 H 1.08993 * 117.50119 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4765 6 8 1.0117 1.0875 -2.3633 7 7 1.9853 -0.3913 -3.7001 8 6 2.6575 -1.6739 -3.9936 9 6 2.2735 -1.9969 -5.4592 10 6 2.2856 -0.5850 -6.1027 11 6 1.7556 0.3166 -4.9680 12 1 0.6891 0.4959 -5.1045 13 6 2.5106 1.6474 -4.9652 14 7 2.2123 2.3822 -6.2017 15 6 2.8273 3.7162 -6.1827 16 6 2.5008 4.4381 -7.4646 17 8 1.8229 3.8947 -8.3110 18 7 2.9671 5.6853 -7.6732 19 6 2.6747 6.3400 -8.8418 20 1 2.0712 5.8561 -9.5953 21 6 3.1559 7.6256 -9.0570 22 7 2.8752 8.2532 -10.1769 23 14 4.2005 8.4623 -7.7538 24 1 5.6330 8.1534 -7.9943 25 1 3.9928 9.9311 -7.8208 26 1 3.8062 7.9673 -6.4104 27 6 2.0399 -0.7213 1.2493 28 6 2.7393 0.1229 2.3165 29 6 3.5550 -0.8264 1.4353 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6054 -1.7198 -1.2952 34 1 3.1263 -0.7995 -1.2056 35 1 2.2923 -2.4536 -3.3251 36 1 3.7383 -1.5695 -3.8988 37 1 1.2802 -2.4425 -5.5137 38 1 3.0163 -2.6448 -5.9246 39 1 1.6214 -0.5491 -6.9662 40 1 3.2992 -0.2974 -6.3823 41 1 3.5821 1.4571 -4.9050 42 1 2.1980 2.2405 -4.1056 43 1 1.2169 2.4451 -6.3538 44 1 3.9086 3.6164 -6.0875 45 1 2.4388 4.2833 -5.3368 46 1 3.5095 6.1198 -6.9965 47 1 3.2108 9.1509 -10.3270 48 1 1.4318 -1.5596 1.5893 49 1 2.8357 1.1923 2.1288 50 1 2.5914 -0.1600 3.3587 51 1 3.9434 -1.7336 1.8981 52 1 4.1883 -0.3821 0.6676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699766655.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:00 Heat of formation + Delta-G solvation = -49.461439 kcal Electronic energy + Delta-G solvation = -29281.442150 eV Core-core repulsion = 25281.365223 eV Total energy + Delta-G solvation = -4000.076927 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.60268 -38.77152 -38.34375 -37.46757 -35.31903 -33.86163 -33.45058 -31.92807 -31.63671 -30.38794 -28.10162 -26.92058 -24.86200 -24.06281 -23.19676 -22.73114 -22.45766 -21.19861 -20.14096 -19.43225 -19.01522 -18.24704 -17.38124 -16.76243 -16.15683 -15.92139 -15.62840 -15.30684 -15.01941 -14.92765 -14.60324 -14.12523 -13.99419 -13.81279 -13.68473 -13.44291 -13.16182 -13.14867 -12.92482 -12.63912 -12.50731 -12.16762 -12.01818 -11.96690 -11.76558 -11.69015 -11.65846 -11.56149 -11.39995 -11.16442 -11.14892 -10.89828 -10.88306 -10.57699 -10.56747 -10.34740 -9.94978 -9.85515 -9.54232 -8.89015 -8.52912 -8.16139 -8.09364 -6.28416 -3.79585 2.42952 2.66614 3.05699 3.09475 3.17295 3.39452 3.77882 4.04615 4.12759 4.23117 4.32523 4.33735 4.44893 4.52838 4.62248 4.68335 4.79090 4.86116 4.89807 4.92862 5.02332 5.13561 5.17069 5.20964 5.24788 5.26963 5.31470 5.35711 5.46499 5.50880 5.53327 5.60555 5.68267 5.71991 5.74092 5.74710 5.80346 5.82558 5.87003 5.90120 5.97584 6.04260 6.13846 6.17505 6.24000 7.09498 7.31333 7.59350 7.61714 7.98808 8.17457 8.62917 8.97828 9.45553 9.86078 10.84733 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013118 B = 0.002198 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.960935 B =12734.007422 C =14158.871772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 H 0.079 0.921 4 C -0.129 4.129 5 C 0.527 3.473 6 O -0.532 6.532 7 N -0.617 5.617 8 C 0.100 3.900 9 C -0.137 4.137 10 C -0.114 4.114 11 C 0.138 3.862 12 H 0.075 0.925 13 C 0.050 3.950 14 N -0.663 5.663 15 C 0.050 3.950 16 C 0.452 3.548 17 O -0.564 6.564 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.040 3.960 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C -0.149 4.149 28 C -0.178 4.178 29 C -0.183 4.183 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.040 0.960 43 H 0.350 0.650 44 H 0.086 0.914 45 H 0.045 0.955 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.104 0.896 49 H 0.095 0.905 50 H 0.092 0.908 51 H 0.093 0.907 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.152 -23.628 23.497 33.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.064 4.064 3 H 0.097 0.903 4 C -0.169 4.169 5 C 0.316 3.684 6 O -0.409 6.409 7 N -0.352 5.352 8 C -0.023 4.023 9 C -0.175 4.175 10 C -0.152 4.152 11 C 0.035 3.965 12 H 0.094 0.906 13 C -0.080 4.080 14 N -0.296 5.296 15 C -0.083 4.083 16 C 0.237 3.763 17 O -0.446 6.446 18 N -0.231 5.231 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.167 4.167 28 C -0.215 4.215 29 C -0.220 4.220 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.170 0.830 44 H 0.104 0.896 45 H 0.063 0.937 46 H 0.203 0.797 47 H 0.083 0.917 48 H 0.122 0.878 49 H 0.113 0.887 50 H 0.111 0.889 51 H 0.111 0.889 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.854 -23.498 22.575 32.638 hybrid contribution 0.449 1.271 1.621 2.109 sum 2.303 -22.226 24.196 32.936 Atomic orbital electron populations 1.21916 0.94191 1.01400 1.03218 1.20475 0.96614 0.98886 0.90406 0.90308 1.21719 1.02823 1.00140 0.92224 1.20421 0.78939 0.85729 0.83326 1.90699 1.39325 1.24980 1.85851 1.48706 1.59979 1.20696 1.05849 1.22394 0.97370 0.85256 0.97275 1.22835 1.02517 0.97989 0.94170 1.22597 1.03318 0.92403 0.96891 1.21523 0.99903 0.92217 0.82851 0.90647 1.22273 0.99991 0.94014 0.91734 1.60068 1.18671 1.16591 1.34243 1.21688 1.00520 0.89601 0.96535 1.19695 0.85053 0.82555 0.88951 1.90557 1.41400 1.66517 1.46136 1.42210 1.48166 1.14248 1.18475 1.19429 1.31576 0.97693 0.94543 0.86272 1.25039 0.97973 0.96399 0.96818 1.69626 1.44975 1.13617 1.24000 0.86670 0.81171 0.80131 0.81421 1.19614 1.20194 1.19515 1.22402 0.94660 1.01954 0.97683 1.23021 1.04488 0.97801 0.96222 1.22972 0.93861 1.01825 1.03327 0.92755 0.90505 0.93364 0.89045 0.88962 0.90706 0.91187 0.90697 0.89717 0.89437 0.89774 0.91208 0.94148 0.83041 0.89589 0.93728 0.79695 0.91651 0.87788 0.88701 0.88903 0.88856 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.92 37.16 0.33 -1.00 16 2 C -0.04 -0.36 2.19 -90.61 -0.20 -0.56 16 3 H 0.08 0.79 7.71 -51.93 -0.40 0.39 16 4 C -0.13 -0.95 4.19 -27.88 -0.12 -1.07 16 5 C 0.53 5.70 7.30 -10.99 -0.08 5.62 16 6 O -0.53 -7.77 13.15 5.56 0.07 -7.70 16 7 N -0.62 -5.99 3.08 -162.76 -0.50 -6.49 16 8 C 0.10 0.64 6.67 -2.35 -0.02 0.62 16 9 C -0.14 -0.89 7.09 -24.58 -0.17 -1.07 16 10 C -0.11 -1.08 6.24 -24.90 -0.16 -1.24 16 11 C 0.14 1.57 2.98 -66.96 -0.20 1.37 16 12 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 13 C 0.05 0.67 5.08 -3.82 -0.02 0.65 16 14 N -0.66 -10.73 5.91 -115.05 -0.68 -11.41 16 15 C 0.05 0.87 6.16 -4.98 -0.03 0.84 16 16 C 0.45 10.57 7.82 -10.99 -0.09 10.48 16 17 O -0.56 -15.41 15.78 5.55 0.09 -15.32 16 18 N -0.59 -14.50 5.09 -10.97 -0.06 -14.55 16 19 C -0.30 -8.76 10.16 -14.94 -0.15 -8.91 16 20 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -26.13 13.96 55.50 0.77 -25.36 16 23 Si 0.88 19.80 27.74 -169.99 -4.71 15.09 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.27 -5.59 6.52 56.52 0.37 -5.22 16 27 C -0.15 -0.96 5.15 -90.62 -0.47 -1.43 16 28 C -0.18 -1.14 10.18 -26.69 -0.27 -1.41 16 29 C -0.18 -1.06 9.68 -26.69 -0.26 -1.32 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.88 5.95 -51.93 -0.31 0.57 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.53 7.78 -51.93 -0.40 0.13 16 34 H 0.09 0.56 7.13 -51.93 -0.37 0.19 16 35 H 0.07 0.34 7.53 -51.92 -0.39 -0.05 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.08 0.86 7.80 -51.93 -0.40 0.45 16 41 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 42 H 0.04 0.61 6.91 -51.92 -0.36 0.25 16 43 H 0.35 5.99 8.36 -39.30 -0.33 5.66 16 44 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.37 8.02 5.76 -40.82 -0.24 7.79 16 47 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.10 0.61 8.11 -51.93 -0.42 0.19 16 49 H 0.09 0.65 8.05 -51.93 -0.42 0.23 16 50 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 52 H 0.09 0.55 7.59 -51.93 -0.39 0.16 16 LS Contribution 412.75 15.07 6.22 6.22 Total: -1.00 -34.21 412.75 -9.85 -44.06 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -9.06 Total: 12.84 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -1.99 Total: 2.62 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.46 Total: -57.81 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: 0.16 Total: -23.02 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.71 Total: 15.09 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.21 -9.85 -44.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699766655.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.406 kcal (2) G-P(sol) polarization free energy of solvation -34.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds