Wall clock time and date at job start Tue Mar 31 2020 20:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47315 * 2 1 4 4 C 1.53002 * 109.47006 * 239.99948 * 2 1 3 5 5 C 1.50697 * 109.47379 * 65.00302 * 4 2 1 6 6 N 1.34772 * 120.00163 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99905 * 359.97438 * 5 4 2 8 8 C 1.50702 * 109.47277 * 120.00073 * 2 1 3 9 9 O 1.21274 * 120.00257 * 106.42076 * 8 2 1 10 10 N 1.34778 * 119.99538 * 286.42834 * 8 2 1 11 11 C 1.47454 * 118.68853 * 353.17960 * 10 8 2 12 12 C 1.53994 * 112.21353 * 138.00029 * 11 10 8 13 13 C 1.50817 * 110.41644 * 319.22933 * 12 11 10 14 14 C 1.52848 * 109.44042 * 91.63785 * 13 12 11 15 15 C 1.46799 * 113.95431 * 275.86257 * 14 13 12 16 16 C 1.54723 * 112.84726 * 300.75044 * 15 14 13 17 17 C 1.54400 * 102.90860 * 273.43439 * 16 15 14 18 18 N 1.47056 * 107.28483 * 338.25272 * 17 16 15 19 19 C 1.36936 * 125.64192 * 178.89445 * 18 17 16 20 20 H 1.07999 * 120.00682 * 179.97438 * 19 18 17 21 21 C 1.38819 * 119.99820 * 359.97438 * 19 18 17 22 22 N 1.31616 * 119.99761 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00178 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47204 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47097 * 119.99631 * 23 21 19 26 26 H 1.48502 * 109.46815 * 239.99620 * 23 21 19 27 27 C 1.47521 * 108.72422 * 358.89388 * 18 17 16 28 28 C 1.44732 * 118.68151 * 173.20486 * 10 8 2 29 29 H 1.08998 * 109.47052 * 175.18898 * 1 2 3 30 30 H 1.08994 * 109.47376 * 295.19329 * 1 2 3 31 31 H 1.08999 * 109.46935 * 55.19102 * 1 2 3 32 32 H 1.09002 * 109.47055 * 184.99979 * 4 2 1 33 33 H 1.09000 * 109.47499 * 304.99499 * 4 2 1 34 34 H 0.97000 * 120.00071 * 359.97438 * 6 5 4 35 35 H 0.96998 * 120.00110 * 180.02562 * 6 5 4 36 36 H 1.09004 * 108.93223 * 17.29380 * 11 10 8 37 37 H 1.09004 * 108.93167 * 258.70575 * 11 10 8 38 38 H 1.09002 * 109.31693 * 198.94373 * 12 11 10 39 39 H 1.08994 * 109.31411 * 79.51954 * 12 11 10 40 40 H 1.09004 * 109.47666 * 331.65130 * 13 12 11 41 41 H 1.09001 * 109.48092 * 211.63532 * 13 12 11 42 42 H 1.08998 * 108.58609 * 154.70466 * 14 13 12 43 43 H 1.09004 * 108.47648 * 36.93885 * 14 13 12 44 44 H 1.08997 * 110.72786 * 155.08282 * 16 15 14 45 45 H 1.09000 * 110.72623 * 31.78612 * 16 15 14 46 46 H 1.08998 * 109.88026 * 218.83146 * 17 16 15 47 47 H 1.08993 * 109.88187 * 97.67547 * 17 16 15 48 48 H 0.97000 * 120.00153 * 179.97438 * 22 21 19 49 49 H 1.08998 * 110.37792 * 142.58710 * 27 18 17 50 50 H 1.09000 * 110.37128 * 264.92950 * 27 18 17 51 51 H 1.08999 * 109.52362 * 150.55885 * 28 10 8 52 52 H 1.08996 * 109.52738 * 30.35357 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0570 -2.4766 6 7 1.9845 -0.3920 -3.7002 7 8 1.0110 1.0869 -2.3634 8 6 2.0324 -0.7104 1.2305 9 8 2.5144 -1.8192 1.1362 10 7 1.9457 -0.1135 2.4357 11 6 1.4971 1.2897 2.5001 12 6 0.5144 1.5341 3.6602 13 6 -0.4564 0.3860 3.7781 14 6 0.0988 -0.6515 4.7537 15 6 1.0389 -1.5998 4.1441 16 6 0.4105 -2.4061 2.9826 17 6 -0.2454 -3.6011 3.7076 18 7 0.4261 -3.7454 5.0079 19 6 0.1230 -4.6783 5.9634 20 1 0.6777 -4.7026 6.8897 21 6 -0.8973 -5.5930 5.7413 22 7 -1.5737 -5.5631 4.6126 23 14 -1.3114 -6.8652 7.0449 24 1 -0.4116 -6.6881 8.2129 25 1 -2.7220 -6.6918 7.4755 26 1 -1.1294 -8.2275 6.4825 27 6 1.4804 -2.7189 5.1129 28 6 2.2973 -0.8753 3.6150 29 1 -0.3633 -1.0240 -0.0862 30 1 -0.3634 0.4374 0.9298 31 1 -0.3633 0.5866 -0.8438 32 1 3.1263 -0.7995 -1.2056 33 1 1.6054 -1.7199 -1.2952 34 1 2.4883 -1.2159 -3.7908 35 1 1.7282 0.1092 -4.4901 36 1 1.0072 1.5478 1.5612 37 1 2.3669 1.9334 2.6317 38 1 -0.0379 2.4557 3.4767 39 1 1.0728 1.6311 4.5912 40 1 -0.5962 -0.0737 2.7997 41 1 -1.4135 0.7555 4.1462 42 1 -0.7350 -1.2120 5.1764 43 1 0.6090 -0.1274 5.5619 44 1 1.1797 -2.7496 2.2910 45 1 -0.3402 -1.8115 2.4621 46 1 -0.1135 -4.5093 3.1195 47 1 -1.3071 -3.4058 3.8584 48 1 -2.2864 -6.2025 4.4573 49 1 1.5385 -2.3374 6.1323 50 1 2.4420 -3.1297 4.8052 51 1 2.6800 -0.2025 4.3825 52 1 3.0606 -1.6103 3.3598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699805031.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:46 Heat of formation + Delta-G solvation = -74.993333 kcal Electronic energy + Delta-G solvation = -32147.495152 eV Core-core repulsion = 28146.311079 eV Total energy + Delta-G solvation = -4001.184073 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.12381 -40.62248 -39.53855 -37.56946 -35.50869 -34.73995 -34.57891 -34.21188 -32.26148 -30.49513 -28.99919 -28.51649 -27.41498 -25.97660 -25.11614 -24.25423 -22.16918 -21.83100 -21.27360 -19.93698 -19.46430 -18.73855 -18.66932 -17.94895 -17.32644 -17.13041 -16.65887 -16.47560 -16.40723 -16.11172 -15.71416 -15.30071 -15.01004 -14.89355 -14.51638 -14.38099 -14.25454 -13.96838 -13.76275 -13.70059 -13.61856 -13.09657 -12.95085 -12.85929 -12.78201 -12.70146 -12.57783 -12.26048 -12.11963 -12.02473 -11.97668 -11.83765 -11.67421 -11.55598 -11.20703 -11.18286 -11.08714 -10.94773 -10.70928 -10.61745 -10.45227 -9.42400 -8.87816 -7.84092 -5.19877 1.42784 1.44819 1.55112 1.65297 1.68125 2.08082 2.48999 2.71285 3.33569 3.48870 3.57284 3.70786 3.79062 3.91366 4.00671 4.07023 4.09370 4.14360 4.21672 4.35868 4.42670 4.48268 4.53591 4.65597 4.66358 4.69879 4.72961 4.76483 4.79573 4.89683 4.91910 4.98042 5.06051 5.07888 5.10587 5.23733 5.24712 5.30287 5.36118 5.41016 5.45493 5.56486 5.62043 5.69211 5.80655 5.82721 5.96414 6.19119 6.45838 6.49428 7.09880 7.28610 7.38541 7.78337 8.44928 9.26493 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.003358 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.429094 B = 8337.428014 C = 9268.325704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 H 0.116 0.884 4 C -0.124 4.124 5 C 0.522 3.478 6 N -0.840 5.840 7 O -0.577 6.577 8 C 0.511 3.489 9 O -0.572 6.572 10 N -0.596 5.596 11 C 0.096 3.904 12 C -0.123 4.123 13 C -0.114 4.114 14 C -0.090 4.090 15 C -0.066 4.066 16 C -0.122 4.122 17 C 0.197 3.803 18 N -0.623 5.623 19 C -0.239 4.239 20 H 0.083 0.917 21 C -0.071 4.071 22 N -0.953 5.953 23 Si 0.980 3.020 24 H -0.263 1.263 25 H -0.291 1.291 26 H -0.294 1.294 27 C 0.142 3.858 28 C 0.137 3.863 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.416 0.584 35 H 0.408 0.592 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.025 0.975 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.062 0.938 46 H -0.012 1.012 47 H 0.003 0.997 48 H 0.244 0.756 49 H 0.046 0.954 50 H 0.017 0.983 51 H 0.100 0.900 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.934 19.445 -12.311 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.134 0.866 4 C -0.165 4.165 5 C 0.307 3.693 6 N -0.404 5.404 7 O -0.457 6.457 8 C 0.301 3.699 9 O -0.452 6.452 10 N -0.326 5.326 11 C -0.025 4.025 12 C -0.161 4.161 13 C -0.152 4.152 14 C -0.127 4.127 15 C -0.068 4.068 16 C -0.160 4.160 17 C 0.071 3.929 18 N -0.349 5.349 19 C -0.368 4.368 20 H 0.101 0.899 21 C -0.264 4.264 22 N -0.603 5.603 23 Si 0.808 3.192 24 H -0.187 1.187 25 H -0.218 1.218 26 H -0.221 1.221 27 C 0.017 3.983 28 C 0.013 3.987 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.247 0.753 35 H 0.240 0.760 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.006 0.994 47 H 0.022 0.978 48 H 0.053 0.947 49 H 0.065 0.935 50 H 0.035 0.965 51 H 0.119 0.881 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.693 19.358 -12.024 24.390 hybrid contribution -0.556 -1.863 0.265 1.963 sum 8.136 17.495 -11.759 22.595 Atomic orbital electron populations 1.21944 0.92325 1.02119 1.04005 1.20987 0.98057 1.01076 0.90693 0.86613 1.21461 1.04144 1.00054 0.90816 1.20628 0.77889 0.84720 0.86034 1.43740 1.59236 1.29881 1.07510 1.90692 1.41496 1.26203 1.87319 1.21011 0.77543 0.85704 0.85677 1.90660 1.46272 1.21567 1.86662 1.47672 1.65654 1.13838 1.05473 1.22378 0.99178 0.79735 1.01227 1.21733 0.96817 0.98585 0.98944 1.21133 0.99035 0.95766 0.99246 1.20169 0.97693 0.96192 0.98646 1.20888 0.96572 0.94277 0.95062 1.22956 0.99573 0.96109 0.97345 1.20755 0.93596 0.93330 0.85193 1.44793 1.38176 1.35624 1.16278 1.19533 1.13452 1.07319 0.96518 0.89884 1.25702 0.98978 1.01932 0.99745 1.70254 1.25218 1.38983 1.25820 0.84978 0.77505 0.78228 0.78444 1.18745 1.21829 1.22099 1.21721 0.90688 0.88524 0.97416 1.21363 0.94789 0.95206 0.87381 0.93908 0.91095 0.89735 0.87223 0.88335 0.75313 0.76033 0.88566 0.89239 0.88223 0.90542 0.92480 0.91547 0.95601 0.90768 0.91042 0.91970 0.99363 0.97838 0.94655 0.93536 0.96549 0.88148 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.44 71.98 0.61 -2.60 16 2 C -0.09 -1.78 1.50 -11.54 -0.02 -1.80 16 3 H 0.12 2.00 6.78 -2.39 -0.02 1.99 16 4 C -0.12 -2.28 4.49 29.85 0.13 -2.15 16 5 C 0.52 9.19 7.84 87.66 0.69 9.88 16 6 N -0.84 -8.45 8.87 -173.54 -1.54 -9.99 16 7 O -0.58 -13.89 14.81 -3.05 -0.05 -13.94 16 8 C 0.51 13.46 5.56 87.66 0.49 13.95 16 9 O -0.57 -19.74 13.14 -3.01 -0.04 -19.78 16 10 N -0.60 -13.72 2.07 -818.75 -1.69 -15.41 16 11 C 0.10 1.45 5.38 86.53 0.47 1.92 16 12 C -0.12 -1.85 5.68 30.22 0.17 -1.68 16 13 C -0.11 -2.67 5.43 29.83 0.16 -2.51 16 14 C -0.09 -2.75 4.13 28.62 0.12 -2.63 16 15 C -0.07 -2.29 0.49 -52.49 -0.03 -2.31 16 16 C -0.12 -5.08 4.42 31.66 0.14 -4.94 16 17 C 0.20 10.75 5.23 86.75 0.45 11.21 16 18 N -0.62 -34.21 3.40 -692.41 -2.35 -36.57 16 19 C -0.24 -14.13 10.28 84.04 0.86 -13.26 16 20 H 0.08 4.66 7.83 -2.91 -0.02 4.63 16 21 C -0.07 -4.26 5.49 84.86 0.47 -3.80 16 22 N -0.95 -60.86 10.31 21.65 0.22 -60.64 16 23 Si 0.98 47.87 29.55 68.60 2.03 49.90 16 24 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 27 C 0.14 6.12 6.19 86.68 0.54 6.65 16 28 C 0.14 3.74 4.47 87.24 0.39 4.13 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.45 4.82 -2.39 -0.01 1.44 16 31 H 0.08 1.88 6.06 -2.39 -0.01 1.87 16 32 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.10 1.98 8.10 -2.39 -0.02 1.96 16 34 H 0.42 2.12 8.83 -92.71 -0.82 1.30 16 35 H 0.41 3.23 8.93 -92.71 -0.83 2.40 16 36 H 0.10 1.32 4.38 -2.38 -0.01 1.31 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.07 7.34 -2.39 -0.02 1.05 16 40 H 0.06 1.50 3.87 -2.38 -0.01 1.49 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.03 1.01 8.02 -2.39 -0.02 0.99 16 43 H 0.07 1.94 7.40 -2.38 -0.02 1.93 16 44 H 0.07 3.17 5.09 -2.39 -0.01 3.16 16 45 H 0.06 2.44 6.11 -2.39 -0.01 2.42 16 46 H -0.01 -0.75 7.51 -2.39 -0.02 -0.77 16 47 H 0.00 0.21 7.38 -2.39 -0.02 0.19 16 48 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 49 H 0.05 1.89 8.04 -2.39 -0.02 1.87 16 50 H 0.02 0.73 7.64 -2.39 -0.02 0.71 16 51 H 0.10 2.14 8.09 -2.39 -0.02 2.12 16 52 H 0.06 2.10 6.80 -2.39 -0.02 2.08 16 Total: -1.00 -81.50 376.50 1.53 -79.96 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -0.69 Total: 16.40 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 5.64 Total: 10.06 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -5.36 Total: -122.61 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -0.08 Total: -33.72 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -81.50 1.53 -79.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699805031.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.971 kcal (2) G-P(sol) polarization free energy of solvation -81.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds