Wall clock time and date at job start Tue Mar 31 2020 20:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47299 * 2 1 4 4 C 1.53010 * 109.46960 * 240.00154 * 2 1 3 5 5 C 1.50699 * 109.46648 * 65.00102 * 4 2 1 6 6 N 1.34782 * 119.99681 * 180.02562 * 5 4 2 7 7 O 1.21275 * 120.00729 * 359.97438 * 5 4 2 8 8 C 1.50699 * 109.47126 * 120.00589 * 2 1 3 9 9 O 1.21281 * 120.00340 * 113.82762 * 8 2 1 10 10 N 1.34771 * 119.99751 * 293.81897 * 8 2 1 11 11 C 1.44573 * 118.71643 * 176.12942 * 10 8 2 12 12 C 1.54755 * 109.61101 * 270.63871 * 11 10 8 13 13 C 1.47062 * 110.53649 * 288.36648 * 12 11 10 14 14 C 1.52896 * 114.31975 * 62.88259 * 13 12 11 15 15 C 1.50714 * 109.25093 * 275.73234 * 14 13 12 16 16 C 1.53963 * 110.93108 * 213.09037 * 15 14 13 17 17 C 1.54466 * 104.82861 * 120.02275 * 16 15 14 18 18 N 1.48174 * 104.62533 * 23.86836 * 17 16 15 19 19 C 1.36931 * 127.80885 * 140.60765 * 18 17 16 20 20 H 1.07995 * 120.00379 * 188.84332 * 19 18 17 21 21 C 1.38818 * 120.00081 * 8.84463 * 19 18 17 22 22 N 1.31619 * 119.99758 * 12.40842 * 21 19 18 23 23 Si 1.86802 * 120.00048 * 192.41297 * 21 19 18 24 24 H 1.48497 * 109.46828 * 89.99775 * 23 21 19 25 25 H 1.48504 * 109.46876 * 209.99525 * 23 21 19 26 26 H 1.48498 * 109.47026 * 329.99560 * 23 21 19 27 27 C 1.48234 * 104.38484 * 320.63859 * 18 17 16 28 28 C 1.47630 * 118.71718 * 356.10941 * 10 8 2 29 29 H 1.08997 * 109.47018 * 170.88715 * 1 2 3 30 30 H 1.09000 * 109.46853 * 290.88908 * 1 2 3 31 31 H 1.08995 * 109.47213 * 50.89052 * 1 2 3 32 32 H 1.08999 * 109.47035 * 184.99655 * 4 2 1 33 33 H 1.08995 * 109.46867 * 305.00098 * 4 2 1 34 34 H 0.96999 * 119.99641 * 359.97438 * 6 5 4 35 35 H 0.96998 * 120.00128 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.44640 * 30.67779 * 11 10 8 37 37 H 1.08999 * 109.44872 * 150.62308 * 11 10 8 38 38 H 1.08996 * 109.26769 * 48.63961 * 12 11 10 39 39 H 1.09003 * 109.26450 * 168.09476 * 12 11 10 40 40 H 1.08997 * 108.51661 * 184.15344 * 13 12 11 41 41 H 1.09006 * 108.51486 * 301.64903 * 13 12 11 42 42 H 1.09000 * 109.51863 * 155.79197 * 14 13 12 43 43 H 1.08999 * 109.50015 * 35.66009 * 14 13 12 44 44 H 1.08995 * 110.36353 * 238.86401 * 16 15 14 45 45 H 1.09006 * 110.36263 * 1.18901 * 16 15 14 46 46 H 1.09004 * 110.40192 * 142.64924 * 17 16 15 47 47 H 1.08997 * 110.40724 * 265.07467 * 17 16 15 48 48 H 0.97000 * 119.99945 * 180.02562 * 22 21 19 49 49 H 1.09003 * 110.41556 * 280.42831 * 27 18 17 50 50 H 1.08997 * 110.41477 * 157.96853 * 27 18 17 51 51 H 1.08995 * 108.96440 * 17.33100 * 28 10 8 52 52 H 1.09005 * 108.90371 * 258.59951 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2494 5 6 1.6413 0.0572 -2.4766 6 7 1.9844 -0.3918 -3.7003 7 8 1.0109 1.0870 -2.3633 8 6 2.0323 -0.7105 1.2304 9 8 2.6345 -1.7577 1.1226 10 7 1.8125 -0.1821 2.4506 11 6 2.2314 -0.9278 3.6162 12 6 1.0860 -1.8621 4.0743 13 6 -0.0073 -1.0823 4.6738 14 6 -0.6841 -0.1048 3.7126 15 6 0.1063 1.1778 3.6701 16 6 -0.8207 2.3883 3.4562 17 6 -0.6001 3.2795 4.6984 18 7 0.7471 2.9080 5.1909 19 6 1.7146 3.7358 5.6946 20 1 2.7063 3.3536 5.8860 21 6 1.4206 5.0664 5.9594 22 7 0.1697 5.4760 5.9623 23 14 2.8002 6.2757 6.3113 24 1 3.2581 6.8882 5.0384 25 1 2.3059 7.3389 7.2226 26 1 3.9330 5.5612 6.9526 27 6 0.8112 1.4376 5.0143 28 6 1.1538 1.1357 2.5447 29 1 -0.3633 -1.0147 -0.1628 30 1 -0.3633 0.3664 0.9601 31 1 -0.3633 0.6482 -0.7974 32 1 3.1263 -0.7994 -1.2057 33 1 1.6053 -1.7198 -1.2953 34 1 2.4882 -1.2157 -3.7909 35 1 1.7281 0.1094 -4.4902 36 1 3.1095 -1.5245 3.3690 37 1 2.4780 -0.2351 4.4208 38 1 0.7052 -2.4128 3.2142 39 1 1.4703 -2.5677 4.8109 40 1 -0.7601 -1.7747 5.0507 41 1 0.3918 -0.5181 5.5168 42 1 -1.6969 0.1031 4.0578 43 1 -0.7216 -0.5425 2.7151 44 1 -0.5409 2.9249 2.5497 45 1 -1.8603 2.0650 3.4012 46 1 -0.6256 4.3330 4.4196 47 1 -1.3538 3.0679 5.4568 48 1 -0.0357 6.4058 6.1469 49 1 0.2832 0.9340 5.8241 50 1 1.8481 1.1047 4.9704 51 1 0.6640 1.3554 1.5961 52 1 1.9109 1.8960 2.7367 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699805032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:50 Heat of formation + Delta-G solvation = -37.918361 kcal Electronic energy + Delta-G solvation = -32015.965093 eV Core-core repulsion = 28016.388711 eV Total energy + Delta-G solvation = -3999.576382 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.96030 -39.73215 -38.55801 -35.81389 -34.64550 -33.91587 -33.57016 -32.81917 -30.64205 -28.69007 -28.17472 -26.99857 -25.75705 -25.23964 -23.93451 -22.46742 -21.58902 -20.50888 -19.91561 -18.62979 -18.13750 -17.79704 -17.19975 -16.85813 -16.39569 -15.98044 -15.60746 -15.46147 -14.85437 -14.57198 -14.51511 -14.10425 -13.83665 -13.76261 -13.43059 -13.17161 -12.98524 -12.91313 -12.66101 -12.26533 -12.06635 -11.93305 -11.64599 -11.50514 -11.35675 -11.21510 -11.12187 -10.92345 -10.75636 -10.72743 -10.58973 -10.24790 -10.15622 -10.08626 -10.04704 -9.92670 -9.68734 -9.60811 -9.54136 -9.37535 -8.61297 -8.39111 -6.86710 -5.75649 -3.07761 2.43026 2.71814 3.03920 3.39242 3.43979 3.45075 3.46469 4.38007 4.48017 4.62366 4.83586 4.85101 4.90073 5.03341 5.07660 5.22620 5.29348 5.34054 5.42806 5.46270 5.48867 5.53887 5.61972 5.75179 5.76021 5.84808 5.86118 5.91205 5.99866 6.01688 6.10407 6.20465 6.21554 6.25935 6.30724 6.35781 6.48096 6.50621 6.52542 6.61781 6.70266 6.77745 6.88518 6.95774 7.04171 7.41049 7.51719 7.57073 7.76912 8.02947 8.25088 8.29185 9.13643 9.77349 10.52550 11.36489 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011965 B = 0.003636 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.622126 B = 7698.527544 C = 8697.528731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.096 4.096 3 H 0.104 0.896 4 C -0.122 4.122 5 C 0.517 3.483 6 N -0.859 5.859 7 O -0.537 6.537 8 C 0.515 3.485 9 O -0.554 6.554 10 N -0.593 5.593 11 C 0.106 3.894 12 C -0.124 4.124 13 C -0.139 4.139 14 C -0.096 4.096 15 C -0.083 4.083 16 C -0.132 4.132 17 C 0.150 3.850 18 N -0.597 5.597 19 C -0.223 4.223 20 H 0.076 0.924 21 C -0.007 4.007 22 N -0.915 5.915 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.131 3.869 28 C 0.108 3.892 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.401 0.599 35 H 0.400 0.600 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.095 0.905 47 H 0.015 0.985 48 H 0.253 0.747 49 H 0.032 0.968 50 H 0.050 0.950 51 H 0.091 0.909 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.633 -15.180 -14.292 20.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.118 4.118 3 H 0.122 0.878 4 C -0.162 4.162 5 C 0.302 3.698 6 N -0.423 5.423 7 O -0.413 6.413 8 C 0.303 3.697 9 O -0.433 6.433 10 N -0.323 5.323 11 C -0.017 4.017 12 C -0.163 4.163 13 C -0.176 4.176 14 C -0.134 4.134 15 C -0.085 4.085 16 C -0.172 4.172 17 C 0.024 3.976 18 N -0.321 5.321 19 C -0.351 4.351 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.562 5.562 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.005 3.995 28 C -0.013 4.013 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.229 0.771 35 H 0.230 0.770 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.113 0.887 47 H 0.033 0.967 48 H 0.063 0.937 49 H 0.049 0.951 50 H 0.068 0.932 51 H 0.108 0.892 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.613 -14.811 -13.913 20.330 hybrid contribution 0.784 0.447 -0.140 0.913 sum 1.397 -14.365 -14.053 20.144 Atomic orbital electron populations 1.22162 0.92231 1.02758 1.04518 1.21004 0.98463 1.00992 0.91325 0.87830 1.21460 1.03670 1.00038 0.91076 1.20731 0.78390 0.85385 0.85266 1.43896 1.60463 1.29603 1.08325 1.90741 1.39418 1.24492 1.86678 1.20586 0.79048 0.85121 0.84954 1.90639 1.42120 1.23807 1.86780 1.47708 1.58571 1.20521 1.05522 1.21624 0.97082 0.94984 0.88037 1.21080 0.96573 0.97999 1.00612 1.20796 0.97884 0.98492 1.00472 1.21156 0.98450 0.94515 0.99259 1.21386 0.95196 0.95240 0.96686 1.22852 0.97042 0.95972 1.01313 1.21695 0.86010 0.99552 0.90305 1.45062 1.13996 1.00254 1.72738 1.18991 0.90001 0.90291 1.35786 0.90614 1.24766 0.96272 0.97723 1.01631 1.69884 1.15826 1.15705 1.54798 0.86178 0.81170 0.81163 0.77636 1.21582 1.21796 1.20698 1.22126 0.97228 0.87109 0.93013 1.22549 0.96012 0.82594 1.00142 0.92741 0.90570 0.89631 0.88164 0.88102 0.77052 0.76951 0.90328 0.89515 0.92392 0.91470 0.93048 0.89912 0.91843 0.92419 0.92352 0.92401 0.88673 0.96676 0.93687 0.95085 0.93238 0.89152 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 8.25 37.16 0.31 -1.55 16 2 C -0.10 -1.15 1.52 -91.77 -0.14 -1.29 16 3 H 0.10 1.32 7.36 -51.93 -0.38 0.94 16 4 C -0.12 -1.19 4.47 -27.88 -0.12 -1.32 16 5 C 0.52 5.18 7.85 -10.98 -0.09 5.09 16 6 N -0.86 -5.18 8.87 31.22 0.28 -4.90 16 7 O -0.54 -7.49 14.83 5.56 0.08 -7.41 16 8 C 0.51 7.22 6.93 -10.99 -0.08 7.15 16 9 O -0.55 -8.88 15.41 5.56 0.09 -8.80 16 10 N -0.59 -8.36 2.28 -172.68 -0.39 -8.75 16 11 C 0.11 1.45 5.34 -4.15 -0.02 1.43 16 12 C -0.12 -1.55 5.72 -28.66 -0.16 -1.72 16 13 C -0.14 -1.81 4.95 -29.63 -0.15 -1.96 16 14 C -0.10 -1.32 4.88 -27.93 -0.14 -1.46 16 15 C -0.08 -1.32 0.68 -154.21 -0.10 -1.42 16 16 C -0.13 -2.34 6.20 -25.46 -0.16 -2.50 16 17 C 0.15 3.45 6.04 -2.35 -0.01 3.44 16 18 N -0.60 -14.45 3.39 -168.96 -0.57 -15.02 16 19 C -0.22 -5.99 10.36 -15.06 -0.16 -6.15 16 20 H 0.08 1.99 7.86 -52.49 -0.41 1.57 16 21 C -0.01 -0.20 5.40 -17.43 -0.09 -0.30 16 22 N -0.92 -26.32 10.66 55.49 0.59 -25.73 16 23 Si 0.91 21.76 29.57 -169.99 -5.03 16.73 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 27 C 0.13 2.51 4.43 -2.57 -0.01 2.50 16 28 C 0.11 1.63 3.81 -3.00 -0.01 1.62 16 29 H 0.05 0.58 8.11 -51.93 -0.42 0.16 16 30 H 0.08 0.92 4.09 -51.93 -0.21 0.71 16 31 H 0.08 1.06 6.17 -51.93 -0.32 0.74 16 32 H 0.10 0.92 8.05 -51.93 -0.42 0.50 16 33 H 0.10 0.89 8.12 -51.93 -0.42 0.47 16 34 H 0.40 1.28 8.83 -40.82 -0.36 0.92 16 35 H 0.40 2.07 8.93 -40.82 -0.36 1.71 16 36 H 0.08 1.11 7.25 -51.93 -0.38 0.73 16 37 H 0.09 1.25 5.14 -51.93 -0.27 0.98 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 1.18 4.60 -51.93 -0.24 0.95 16 42 H 0.06 0.87 7.42 -51.93 -0.39 0.49 16 43 H 0.06 0.76 6.17 -51.93 -0.32 0.44 16 44 H 0.06 1.01 7.49 -51.93 -0.39 0.62 16 45 H 0.06 0.91 7.34 -51.93 -0.38 0.53 16 46 H 0.10 2.49 6.16 -51.93 -0.32 2.17 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.03 0.61 5.95 -51.93 -0.31 0.31 16 50 H 0.05 0.93 5.11 -51.93 -0.27 0.67 16 51 H 0.09 1.26 3.61 -51.93 -0.19 1.07 16 52 H 0.07 1.30 7.95 -51.93 -0.41 0.89 16 LS Contribution 375.75 15.07 5.66 5.66 Total: -1.00 -32.46 375.75 -8.42 -40.88 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.99 Total: 5.75 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -1.14 Total: 1.58 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.10 Total: -54.40 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.17 Total: -16.20 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.46 -8.42 -40.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699805032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.961 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds