Wall clock time and date at job start Tue Mar 31 2020 20:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47299 * 2 1 4 4 C 1.53010 * 109.46960 * 240.00154 * 2 1 3 5 5 C 1.50699 * 109.46648 * 65.00102 * 4 2 1 6 6 N 1.34782 * 119.99681 * 180.02562 * 5 4 2 7 7 O 1.21275 * 120.00729 * 359.97438 * 5 4 2 8 8 C 1.50699 * 109.47126 * 120.00589 * 2 1 3 9 9 O 1.21281 * 120.00340 * 113.82762 * 8 2 1 10 10 N 1.34771 * 119.99751 * 293.81897 * 8 2 1 11 11 C 1.44573 * 118.71643 * 176.12942 * 10 8 2 12 12 C 1.54755 * 109.61101 * 270.63871 * 11 10 8 13 13 C 1.47062 * 110.53649 * 288.36648 * 12 11 10 14 14 C 1.52896 * 114.31975 * 62.88259 * 13 12 11 15 15 C 1.50714 * 109.25093 * 275.73234 * 14 13 12 16 16 C 1.53963 * 110.93108 * 213.09037 * 15 14 13 17 17 C 1.54466 * 104.82861 * 120.02275 * 16 15 14 18 18 N 1.48174 * 104.62533 * 23.86836 * 17 16 15 19 19 C 1.36931 * 127.80885 * 140.60765 * 18 17 16 20 20 H 1.07995 * 120.00379 * 188.84332 * 19 18 17 21 21 C 1.38818 * 120.00081 * 8.84463 * 19 18 17 22 22 N 1.31619 * 119.99758 * 12.40842 * 21 19 18 23 23 Si 1.86802 * 120.00048 * 192.41297 * 21 19 18 24 24 H 1.48497 * 109.46828 * 89.99775 * 23 21 19 25 25 H 1.48504 * 109.46876 * 209.99525 * 23 21 19 26 26 H 1.48498 * 109.47026 * 329.99560 * 23 21 19 27 27 C 1.48234 * 104.38484 * 320.63859 * 18 17 16 28 28 C 1.47630 * 118.71718 * 356.10941 * 10 8 2 29 29 H 1.08997 * 109.47018 * 170.88715 * 1 2 3 30 30 H 1.09000 * 109.46853 * 290.88908 * 1 2 3 31 31 H 1.08995 * 109.47213 * 50.89052 * 1 2 3 32 32 H 1.08999 * 109.47035 * 184.99655 * 4 2 1 33 33 H 1.08995 * 109.46867 * 305.00098 * 4 2 1 34 34 H 0.96999 * 119.99641 * 359.97438 * 6 5 4 35 35 H 0.96998 * 120.00128 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.44640 * 30.67779 * 11 10 8 37 37 H 1.08999 * 109.44872 * 150.62308 * 11 10 8 38 38 H 1.08996 * 109.26769 * 48.63961 * 12 11 10 39 39 H 1.09003 * 109.26450 * 168.09476 * 12 11 10 40 40 H 1.08997 * 108.51661 * 184.15344 * 13 12 11 41 41 H 1.09006 * 108.51486 * 301.64903 * 13 12 11 42 42 H 1.09000 * 109.51863 * 155.79197 * 14 13 12 43 43 H 1.08999 * 109.50015 * 35.66009 * 14 13 12 44 44 H 1.08995 * 110.36353 * 238.86401 * 16 15 14 45 45 H 1.09006 * 110.36263 * 1.18901 * 16 15 14 46 46 H 1.09004 * 110.40192 * 142.64924 * 17 16 15 47 47 H 1.08997 * 110.40724 * 265.07467 * 17 16 15 48 48 H 0.97000 * 119.99945 * 180.02562 * 22 21 19 49 49 H 1.09003 * 110.41556 * 280.42831 * 27 18 17 50 50 H 1.08997 * 110.41477 * 157.96853 * 27 18 17 51 51 H 1.08995 * 108.96440 * 17.33100 * 28 10 8 52 52 H 1.09005 * 108.90371 * 258.59951 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2494 5 6 1.6413 0.0572 -2.4766 6 7 1.9844 -0.3918 -3.7003 7 8 1.0109 1.0870 -2.3633 8 6 2.0323 -0.7105 1.2304 9 8 2.6345 -1.7577 1.1226 10 7 1.8125 -0.1821 2.4506 11 6 2.2314 -0.9278 3.6162 12 6 1.0860 -1.8621 4.0743 13 6 -0.0073 -1.0823 4.6738 14 6 -0.6841 -0.1048 3.7126 15 6 0.1063 1.1778 3.6701 16 6 -0.8207 2.3883 3.4562 17 6 -0.6001 3.2795 4.6984 18 7 0.7471 2.9080 5.1909 19 6 1.7146 3.7358 5.6946 20 1 2.7063 3.3536 5.8860 21 6 1.4206 5.0664 5.9594 22 7 0.1697 5.4760 5.9623 23 14 2.8002 6.2757 6.3113 24 1 3.2581 6.8882 5.0384 25 1 2.3059 7.3389 7.2226 26 1 3.9330 5.5612 6.9526 27 6 0.8112 1.4376 5.0143 28 6 1.1538 1.1357 2.5447 29 1 -0.3633 -1.0147 -0.1628 30 1 -0.3633 0.3664 0.9601 31 1 -0.3633 0.6482 -0.7974 32 1 3.1263 -0.7994 -1.2057 33 1 1.6053 -1.7198 -1.2953 34 1 2.4882 -1.2157 -3.7909 35 1 1.7281 0.1094 -4.4902 36 1 3.1095 -1.5245 3.3690 37 1 2.4780 -0.2351 4.4208 38 1 0.7052 -2.4128 3.2142 39 1 1.4703 -2.5677 4.8109 40 1 -0.7601 -1.7747 5.0507 41 1 0.3918 -0.5181 5.5168 42 1 -1.6969 0.1031 4.0578 43 1 -0.7216 -0.5425 2.7151 44 1 -0.5409 2.9249 2.5497 45 1 -1.8603 2.0650 3.4012 46 1 -0.6256 4.3330 4.4196 47 1 -1.3538 3.0679 5.4568 48 1 -0.0357 6.4058 6.1469 49 1 0.2832 0.9340 5.8241 50 1 1.8481 1.1047 4.9704 51 1 0.6640 1.3554 1.5961 52 1 1.9109 1.8960 2.7367 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699805032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:49 Heat of formation + Delta-G solvation = -59.904249 kcal Electronic energy + Delta-G solvation = -32016.918472 eV Core-core repulsion = 28016.388711 eV Total energy + Delta-G solvation = -4000.529761 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.11671 -40.66676 -39.78432 -37.24232 -35.67833 -34.91377 -34.61128 -34.28038 -32.34734 -30.28851 -29.12464 -28.19685 -27.40028 -26.47066 -25.23454 -23.76021 -22.94358 -21.61446 -21.17509 -19.75262 -19.39653 -18.86779 -18.55195 -17.93562 -17.48772 -17.09641 -16.71496 -16.58913 -16.44676 -15.96017 -15.80159 -15.36018 -15.09404 -14.96543 -14.64953 -14.52267 -14.12599 -14.09118 -13.73361 -13.64112 -13.39905 -13.09983 -13.03887 -12.92758 -12.79839 -12.59141 -12.49415 -12.20643 -12.13064 -12.06881 -11.95364 -11.89398 -11.60216 -11.46441 -11.32947 -11.08184 -10.97268 -10.95001 -10.68646 -10.59080 -10.46132 -9.57347 -8.84210 -7.84241 -5.16629 1.46724 1.48583 1.56192 1.60211 1.67469 2.00413 2.51052 2.67717 3.31960 3.44566 3.60525 3.69776 3.74872 3.83728 3.96651 4.02712 4.10508 4.13361 4.19286 4.28260 4.41068 4.48715 4.52444 4.56901 4.66087 4.70375 4.71318 4.75898 4.81410 4.84344 4.92964 5.00375 5.07596 5.08763 5.12149 5.19608 5.22610 5.31899 5.35741 5.40960 5.44306 5.50879 5.57668 5.66459 5.72726 5.82903 5.96047 6.26952 6.37522 6.49044 7.08026 7.16273 7.39597 7.76764 8.53144 9.27030 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011965 B = 0.003636 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.622126 B = 7698.527544 C = 8697.528731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 H 0.093 0.907 4 C -0.117 4.117 5 C 0.517 3.483 6 N -0.838 5.838 7 O -0.582 6.582 8 C 0.517 3.483 9 O -0.571 6.571 10 N -0.592 5.592 11 C 0.103 3.897 12 C -0.115 4.115 13 C -0.135 4.135 14 C -0.092 4.092 15 C -0.068 4.068 16 C -0.120 4.120 17 C 0.152 3.848 18 N -0.620 5.620 19 C -0.229 4.229 20 H 0.078 0.922 21 C -0.063 4.063 22 N -0.945 5.945 23 Si 0.969 3.031 24 H -0.288 1.288 25 H -0.297 1.297 26 H -0.270 1.270 27 C 0.132 3.868 28 C 0.119 3.881 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.417 0.583 35 H 0.407 0.593 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.083 0.917 46 H 0.059 0.941 47 H -0.006 1.006 48 H 0.247 0.753 49 H 0.033 0.967 50 H 0.052 0.948 51 H 0.105 0.895 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.936 -17.456 -15.725 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 H 0.111 0.889 4 C -0.157 4.157 5 C 0.303 3.697 6 N -0.402 5.402 7 O -0.462 6.462 8 C 0.306 3.694 9 O -0.452 6.452 10 N -0.322 5.322 11 C -0.020 4.020 12 C -0.154 4.154 13 C -0.172 4.172 14 C -0.130 4.130 15 C -0.071 4.071 16 C -0.159 4.159 17 C 0.027 3.973 18 N -0.344 5.344 19 C -0.358 4.358 20 H 0.095 0.905 21 C -0.256 4.256 22 N -0.594 5.594 23 Si 0.798 3.202 24 H -0.216 1.216 25 H -0.224 1.224 26 H -0.195 1.195 27 C 0.008 3.992 28 C -0.003 4.003 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.249 0.751 35 H 0.239 0.761 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.102 0.898 46 H 0.077 0.923 47 H 0.012 0.988 48 H 0.056 0.944 49 H 0.051 0.949 50 H 0.070 0.930 51 H 0.123 0.877 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.947 -17.160 -15.383 23.065 hybrid contribution 0.735 1.075 0.300 1.336 sum 1.682 -16.085 -15.083 22.115 Atomic orbital electron populations 1.22075 0.91693 1.03263 1.03842 1.21002 0.98853 1.00434 0.91426 0.88876 1.21424 1.04073 1.00237 0.89960 1.20757 0.77947 0.84765 0.86264 1.43716 1.59245 1.29913 1.07366 1.90731 1.41713 1.26385 1.87346 1.20870 0.78481 0.84839 0.85193 1.90630 1.42895 1.24651 1.86980 1.47696 1.58468 1.20090 1.05969 1.21661 0.97759 0.94938 0.87638 1.21014 0.95735 0.97723 1.00894 1.20737 0.98408 0.98480 0.99623 1.21141 0.98298 0.93217 1.00328 1.21235 0.95031 0.95836 0.94959 1.22720 0.99036 0.95596 0.98557 1.21535 0.85262 0.98665 0.91885 1.45326 1.13879 1.02420 1.72741 1.19320 0.90754 0.90982 1.34711 0.90453 1.25504 0.98232 0.99335 1.02574 1.70078 1.17512 1.15432 1.56414 0.85208 0.78921 0.78868 0.77170 1.21550 1.22359 1.19512 1.22301 0.97956 0.84205 0.94757 1.22341 0.95065 0.82510 1.00381 0.91554 0.91087 0.90377 0.87496 0.86730 0.75144 0.76132 0.90582 0.90494 0.92485 0.89811 0.91256 0.91399 0.91230 0.91148 0.92015 0.89836 0.92291 0.98766 0.94396 0.94923 0.93008 0.87728 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.25 71.98 0.59 -2.62 16 2 C -0.10 -2.14 1.52 -11.54 -0.02 -2.16 16 3 H 0.09 2.31 7.36 -2.39 -0.02 2.30 16 4 C -0.12 -2.03 4.47 29.85 0.13 -1.89 16 5 C 0.52 9.44 7.85 87.66 0.69 10.13 16 6 N -0.84 -8.11 8.87 -173.53 -1.54 -9.65 16 7 O -0.58 -15.70 14.83 -3.01 -0.04 -15.74 16 8 C 0.52 13.59 6.93 87.66 0.61 14.20 16 9 O -0.57 -17.12 15.41 -3.03 -0.05 -17.17 16 10 N -0.59 -15.88 2.28 -818.63 -1.86 -17.74 16 11 C 0.10 2.68 5.34 87.34 0.47 3.15 16 12 C -0.12 -2.59 5.72 29.35 0.17 -2.42 16 13 C -0.14 -3.17 4.95 28.71 0.14 -3.03 16 14 C -0.09 -2.30 4.88 29.82 0.15 -2.16 16 15 C -0.07 -2.11 0.68 -51.99 -0.04 -2.14 16 16 C -0.12 -4.15 6.20 31.42 0.19 -3.96 16 17 C 0.15 7.20 6.04 86.56 0.52 7.72 16 18 N -0.62 -30.61 3.39 -688.46 -2.34 -32.94 16 19 C -0.23 -12.56 10.36 84.04 0.87 -11.68 16 20 H 0.08 4.11 7.86 -2.91 -0.02 4.08 16 21 C -0.06 -3.55 5.40 84.86 0.46 -3.10 16 22 N -0.95 -56.30 10.66 21.65 0.23 -56.07 16 23 Si 0.97 45.63 29.57 68.60 2.03 47.66 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 27 C 0.13 5.05 4.43 86.38 0.38 5.44 16 28 C 0.12 3.47 3.81 86.43 0.33 3.80 16 29 H 0.07 1.24 8.11 -2.39 -0.02 1.22 16 30 H 0.07 1.55 4.09 -2.39 -0.01 1.54 16 31 H 0.08 1.83 6.17 -2.39 -0.01 1.82 16 32 H 0.11 1.73 8.05 -2.39 -0.02 1.71 16 33 H 0.11 1.69 8.12 -2.39 -0.02 1.67 16 34 H 0.42 1.45 8.83 -92.71 -0.82 0.63 16 35 H 0.41 3.32 8.93 -92.71 -0.83 2.49 16 36 H 0.08 2.04 7.25 -2.39 -0.02 2.02 16 37 H 0.08 2.15 5.14 -2.39 -0.01 2.14 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.82 4.60 -2.38 -0.01 1.81 16 42 H 0.07 1.70 7.42 -2.39 -0.02 1.68 16 43 H 0.07 1.63 6.17 -2.39 -0.01 1.61 16 44 H 0.06 2.10 7.49 -2.39 -0.02 2.09 16 45 H 0.08 2.48 7.34 -2.38 -0.02 2.46 16 46 H 0.06 3.22 6.16 -2.38 -0.01 3.21 16 47 H -0.01 -0.29 8.14 -2.39 -0.02 -0.30 16 48 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 49 H 0.03 1.27 5.95 -2.39 -0.01 1.26 16 50 H 0.05 1.95 5.11 -2.39 -0.01 1.94 16 51 H 0.10 2.79 3.61 -2.39 -0.01 2.78 16 52 H 0.05 1.68 7.95 -2.38 -0.02 1.67 16 Total: -1.00 -71.58 375.75 1.41 -70.18 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -0.67 Total: 22.20 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 5.65 Total: 9.27 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -5.51 Total: -116.40 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.09 Total: -32.91 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -71.58 1.41 -70.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699805032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.273 kcal (2) G-P(sol) polarization free energy of solvation -71.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds