Wall clock time and date at job start Tue Mar 31 2020 20:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47259 * 2 1 4 4 N 1.46904 * 109.47420 * 239.99669 * 2 1 3 5 5 C 1.46897 * 110.99644 * 84.99907 * 4 2 1 6 6 C 1.50709 * 109.47150 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99414 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99893 * 180.02562 * 6 5 4 9 9 C 1.37103 * 119.99529 * 180.02562 * 8 6 5 10 10 H 1.07997 * 120.00371 * 359.97438 * 9 8 6 11 11 C 1.38953 * 119.99839 * 179.97438 * 9 8 6 12 12 N 1.31411 * 119.99870 * 359.97438 * 11 9 8 13 13 Si 1.86790 * 119.99920 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47095 * 179.97438 * 13 11 9 15 15 H 1.48502 * 109.47615 * 59.99727 * 13 11 9 16 16 H 1.48503 * 109.47331 * 299.99405 * 13 11 9 17 17 C 1.52998 * 109.47191 * 119.99869 * 2 1 3 18 18 H 1.09004 * 110.88987 * 60.69894 * 17 2 1 19 19 C 1.55153 * 111.00681 * 184.58158 * 17 2 1 20 20 C 1.54320 * 102.94506 * 153.57499 * 19 17 2 21 21 N 1.47029 * 107.27178 * 337.80988 * 20 19 17 22 22 C 1.34775 * 125.64943 * 178.99518 * 21 20 19 23 23 O 1.21282 * 120.00026 * 179.97438 * 22 21 20 24 24 C 1.50705 * 119.99938 * 359.97293 * 22 21 20 25 25 C 1.53000 * 109.46766 * 185.50587 * 24 22 21 26 26 C 1.52998 * 115.55232 * 279.63924 * 25 24 22 27 27 C 1.53003 * 117.49643 * 133.93072 * 25 24 22 28 28 C 1.52993 * 59.99825 * 252.50915 * 27 25 24 29 29 C 1.47460 * 108.71943 * 358.97372 * 21 20 19 30 30 H 1.09000 * 109.47444 * 60.00642 * 1 2 3 31 31 H 1.09009 * 109.46829 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47387 * 299.99841 * 1 2 3 33 33 H 1.00894 * 111.00341 * 208.95498 * 4 2 1 34 34 H 1.08997 * 109.47531 * 60.00025 * 5 4 2 35 35 H 1.09000 * 109.47385 * 300.00142 * 5 4 2 36 36 H 0.96998 * 120.00220 * 359.97438 * 8 6 5 37 37 H 0.97007 * 120.00025 * 359.97438 * 12 11 9 38 38 H 1.08996 * 110.72363 * 271.93722 * 19 17 2 39 39 H 1.08998 * 110.71881 * 35.21517 * 19 17 2 40 40 H 1.09001 * 109.88580 * 97.22455 * 20 19 17 41 41 H 1.09003 * 109.88894 * 218.23992 * 20 19 17 42 42 H 1.08997 * 109.46992 * 305.50917 * 24 22 21 43 43 H 1.08997 * 109.46771 * 65.51059 * 24 22 21 44 44 H 1.09003 * 109.47158 * 65.00506 * 26 25 24 45 45 H 1.08998 * 109.47421 * 185.00908 * 26 25 24 46 46 H 1.09006 * 109.46630 * 305.00648 * 26 25 24 47 47 H 1.08994 * 117.49875 * 0.02562 * 27 25 24 48 48 H 1.08998 * 117.49755 * 145.01681 * 27 25 24 49 49 H 1.09001 * 117.50097 * 252.50403 * 28 27 25 50 50 H 1.09001 * 117.50195 * 107.49118 * 28 27 25 51 51 H 1.09005 * 110.35039 * 265.25033 * 29 21 20 52 52 H 1.09005 * 110.40578 * 142.91840 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5874 -0.5219 -3.5560 7 8 2.8670 -1.6990 -3.4703 8 7 2.7283 0.1204 -4.7325 9 6 3.1872 -0.5570 -5.8326 10 1 3.4362 -1.6052 -5.7564 11 6 3.3320 0.1050 -7.0457 12 7 3.0286 1.3802 -7.1385 13 14 3.9579 -0.8177 -8.5443 14 1 4.0207 0.1071 -9.7045 15 1 3.0360 -1.9396 -8.8557 16 1 5.3140 -1.3545 -8.2646 17 6 2.0400 -0.7212 1.2492 18 1 1.6997 -1.7566 1.2664 19 6 3.5866 -0.6426 1.3444 20 6 3.8462 -0.7624 2.8609 21 7 2.6105 -0.3598 3.5485 22 6 2.4232 -0.3452 4.8831 23 8 1.3575 0.0076 5.3420 24 6 3.5381 -0.7674 5.8051 25 6 3.0263 -0.7907 7.2467 26 6 2.9643 0.5682 7.9471 27 6 3.3762 -2.0109 8.1009 28 6 1.9453 -1.8154 7.5961 29 6 1.6099 0.0259 2.5363 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.9173 -1.1205 -1.0287 34 1 2.7588 1.0461 -2.1182 35 1 1.0871 0.6162 -2.5525 36 1 2.5044 1.0617 -4.8010 37 1 2.7032 1.8593 -6.3603 38 1 4.0487 -1.4709 0.8075 39 1 3.9481 0.3135 0.9657 40 1 4.0923 -1.7936 3.1145 41 1 4.6653 -0.1040 3.1501 42 1 3.8832 -1.7628 5.5258 43 1 4.3638 -0.0604 5.7241 44 1 2.2310 1.2013 7.4476 45 1 2.6738 0.4275 8.9882 46 1 3.9442 1.0438 7.9044 47 1 3.9713 -2.7968 7.6359 48 1 3.5626 -1.8457 9.1620 49 1 1.1900 -1.5217 8.3251 50 1 1.5985 -2.4729 6.7988 51 1 1.6307 1.1037 2.3742 52 1 0.6143 -0.2928 2.8453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699945551.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:42 Heat of formation + Delta-G solvation = -54.211965 kcal Electronic energy + Delta-G solvation = -29015.787082 eV Core-core repulsion = 25015.504157 eV Total energy + Delta-G solvation = -4000.282925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.61288 -39.09909 -38.34434 -37.44236 -35.89915 -34.28332 -32.25267 -31.09367 -30.59609 -30.10661 -28.70334 -27.76334 -26.54902 -24.39075 -23.44736 -22.73817 -22.08852 -20.32550 -20.20241 -19.61850 -18.86782 -17.92254 -17.39280 -17.06652 -16.23269 -15.93529 -15.65070 -15.25934 -15.14443 -14.76597 -14.41009 -14.29006 -13.96174 -13.80856 -13.65935 -13.45387 -13.24695 -12.99770 -12.93358 -12.67774 -12.58471 -12.45342 -12.25168 -12.05770 -11.95653 -11.83408 -11.59764 -11.35501 -11.24055 -11.14600 -10.98756 -10.93263 -10.68233 -10.62927 -10.25726 -10.21625 -9.87941 -9.81025 -9.56038 -8.93656 -8.52829 -8.16847 -8.04448 -6.76667 -3.89935 2.38935 2.60819 3.29953 3.34025 3.44717 3.54285 3.82369 3.92024 4.18065 4.20451 4.23993 4.32868 4.36375 4.48240 4.60413 4.63834 4.75378 4.84815 4.90586 5.02752 5.07985 5.13690 5.16386 5.21875 5.26822 5.29210 5.31318 5.40367 5.47998 5.51136 5.54836 5.56136 5.61857 5.63764 5.68994 5.72113 5.75980 5.82125 5.85724 5.88911 5.95354 5.98809 6.02057 6.03119 6.31026 7.12488 7.22077 7.57435 7.79479 7.91869 8.06649 8.58721 8.78408 9.46202 9.86245 10.66701 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.032199 B = 0.001684 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.394229 B =16627.507983 C =16940.303211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.096 3.904 3 H 0.044 0.956 4 N -0.662 5.662 5 C 0.051 3.949 6 C 0.443 3.557 7 O -0.577 6.577 8 N -0.576 5.576 9 C -0.383 4.383 10 H 0.099 0.901 11 C -0.010 4.010 12 N -0.901 5.901 13 Si 1.092 2.908 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.101 4.101 18 H 0.096 0.904 19 C -0.135 4.135 20 C 0.102 3.898 21 N -0.622 5.622 22 C 0.528 3.472 23 O -0.531 6.531 24 C -0.100 4.100 25 C -0.113 4.113 26 C -0.112 4.112 27 C -0.178 4.178 28 C -0.156 4.156 29 C 0.115 3.885 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.349 0.651 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.375 0.625 37 H 0.261 0.739 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.067 0.933 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.094 0.906 50 H 0.090 0.910 51 H 0.068 0.932 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 -0.722 27.528 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.015 4.015 3 H 0.062 0.938 4 N -0.296 5.296 5 C -0.082 4.082 6 C 0.229 3.771 7 O -0.460 6.460 8 N -0.214 5.214 9 C -0.512 4.512 10 H 0.117 0.883 11 C -0.212 4.212 12 N -0.540 5.540 13 Si 0.917 3.083 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.120 4.120 18 H 0.114 0.886 19 C -0.173 4.173 20 C -0.021 4.021 21 N -0.357 5.357 22 C 0.317 3.683 23 O -0.407 6.407 24 C -0.140 4.140 25 C -0.113 4.113 26 C -0.170 4.170 27 C -0.214 4.214 28 C -0.193 4.193 29 C -0.008 4.008 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.170 0.830 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.208 0.792 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.111 0.889 48 H 0.113 0.887 49 H 0.112 0.888 50 H 0.108 0.892 51 H 0.086 0.914 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.918 -1.419 26.119 26.173 hybrid contribution 0.326 0.954 1.701 1.977 sum 1.244 -0.465 27.820 27.852 Atomic orbital electron populations 1.21846 0.94323 1.02685 1.01238 1.21450 0.96238 0.95378 0.88387 0.93773 1.60127 1.34844 1.32029 1.02600 1.21719 1.01203 0.93887 0.91383 1.19732 0.84956 0.88227 0.84191 1.90523 1.54914 1.16012 1.84597 1.41941 1.58918 1.11538 1.08981 1.20534 1.43939 0.97881 0.88840 0.88328 1.26513 0.97016 0.96655 1.01009 1.70905 1.41893 1.08566 1.32620 0.83128 0.76416 0.74559 0.74152 1.20417 1.20991 1.21037 1.22551 0.94822 1.01188 0.93471 0.88598 1.22778 0.96322 1.03724 0.94513 1.22042 0.87022 1.00304 0.92729 1.48588 1.15213 1.66757 1.05189 1.20321 0.89461 0.77718 0.80788 1.90706 1.27435 1.47484 1.75098 1.21200 0.97082 1.03440 0.92244 1.21052 1.04442 0.92318 0.93534 1.21297 1.01831 0.94431 0.99396 1.23181 0.99264 0.99247 0.99757 1.22878 0.91685 1.01694 1.03086 1.22234 0.92961 0.99043 0.86524 0.92451 0.91729 0.92666 0.83017 0.94014 0.89635 0.79161 0.92779 0.89139 0.90391 0.91174 0.91247 0.89009 0.88435 0.91438 0.92528 0.92542 0.88867 0.88679 0.88762 0.89152 0.91404 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.23 37.16 0.34 -1.25 16 2 C 0.10 1.09 2.16 -67.71 -0.15 0.94 16 3 H 0.04 0.49 7.79 -51.93 -0.40 0.08 16 4 N -0.66 -10.02 5.93 -107.99 -0.64 -10.66 16 5 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 6 C 0.44 10.30 7.82 -10.98 -0.09 10.21 16 7 O -0.58 -15.53 15.78 5.55 0.09 -15.44 16 8 N -0.58 -14.34 5.28 -10.96 -0.06 -14.40 16 9 C -0.38 -10.70 9.68 -14.93 -0.14 -10.84 16 10 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 11 C -0.01 -0.26 5.50 -17.47 -0.10 -0.35 16 12 N -0.90 -25.09 13.68 55.50 0.76 -24.33 16 13 Si 1.09 24.11 29.92 -169.99 -5.09 19.02 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 17 C -0.10 -0.97 2.68 -88.47 -0.24 -1.20 16 18 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 19 C -0.14 -1.11 5.56 -24.90 -0.14 -1.25 16 20 C 0.10 0.73 6.48 -3.06 -0.02 0.71 16 21 N -0.62 -5.82 3.33 -170.48 -0.57 -6.39 16 22 C 0.53 5.51 7.71 -10.98 -0.08 5.42 16 23 O -0.53 -7.34 15.21 5.56 0.08 -7.26 16 24 C -0.10 -0.73 4.83 -27.88 -0.13 -0.87 16 25 C -0.11 -0.89 1.59 -154.51 -0.25 -1.13 16 26 C -0.11 -0.86 9.66 37.16 0.36 -0.50 16 27 C -0.18 -1.15 9.87 -26.73 -0.26 -1.42 16 28 C -0.16 -1.30 9.19 -26.74 -0.25 -1.55 16 29 C 0.12 1.12 5.42 -2.51 -0.01 1.11 16 30 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 31 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 32 H 0.05 0.52 7.33 -51.93 -0.38 0.14 16 33 H 0.35 5.36 6.90 -39.30 -0.27 5.09 16 34 H 0.04 0.63 8.05 -51.93 -0.42 0.21 16 35 H 0.09 1.36 7.44 -51.93 -0.39 0.97 16 36 H 0.38 8.63 6.73 -40.82 -0.27 8.36 16 37 H 0.26 6.98 6.78 -40.82 -0.28 6.70 16 38 H 0.09 0.75 7.77 -51.93 -0.40 0.34 16 39 H 0.08 0.65 8.03 -51.93 -0.42 0.23 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.55 7.93 -51.93 -0.41 0.14 16 43 H 0.10 0.58 8.13 -51.93 -0.42 0.15 16 44 H 0.07 0.64 7.60 -51.93 -0.39 0.24 16 45 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 48 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.07 0.66 8.04 -51.93 -0.42 0.24 16 52 H 0.08 0.87 7.95 -51.93 -0.41 0.45 16 LS Contribution 416.18 15.07 6.27 6.27 Total: -1.00 -33.95 416.18 -9.40 -43.36 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -9.07 Total: 10.98 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.18 Total: -1.14 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.51 Total: -55.79 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: 0.17 Total: -22.70 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -5.09 Total: 19.02 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.95 -9.40 -43.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699945551.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.856 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds