Wall clock time and date at job start Tue Mar 31 2020 20:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47259 * 2 1 4 4 N 1.46904 * 109.47420 * 239.99669 * 2 1 3 5 5 C 1.46897 * 110.99644 * 84.99907 * 4 2 1 6 6 C 1.50709 * 109.47150 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99414 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99893 * 180.02562 * 6 5 4 9 9 C 1.37103 * 119.99529 * 180.02562 * 8 6 5 10 10 H 1.07997 * 120.00371 * 359.97438 * 9 8 6 11 11 C 1.38953 * 119.99839 * 179.97438 * 9 8 6 12 12 N 1.31411 * 119.99870 * 359.97438 * 11 9 8 13 13 Si 1.86790 * 119.99920 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47095 * 179.97438 * 13 11 9 15 15 H 1.48502 * 109.47615 * 59.99727 * 13 11 9 16 16 H 1.48503 * 109.47331 * 299.99405 * 13 11 9 17 17 C 1.52998 * 109.47191 * 119.99869 * 2 1 3 18 18 H 1.09004 * 110.88987 * 60.69894 * 17 2 1 19 19 C 1.55153 * 111.00681 * 184.58158 * 17 2 1 20 20 C 1.54320 * 102.94506 * 153.57499 * 19 17 2 21 21 N 1.47029 * 107.27178 * 337.80988 * 20 19 17 22 22 C 1.34775 * 125.64943 * 178.99518 * 21 20 19 23 23 O 1.21282 * 120.00026 * 179.97438 * 22 21 20 24 24 C 1.50705 * 119.99938 * 359.97293 * 22 21 20 25 25 C 1.53000 * 109.46766 * 185.50587 * 24 22 21 26 26 C 1.52998 * 115.55232 * 279.63924 * 25 24 22 27 27 C 1.53003 * 117.49643 * 133.93072 * 25 24 22 28 28 C 1.52993 * 59.99825 * 252.50915 * 27 25 24 29 29 C 1.47460 * 108.71943 * 358.97372 * 21 20 19 30 30 H 1.09000 * 109.47444 * 60.00642 * 1 2 3 31 31 H 1.09009 * 109.46829 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47387 * 299.99841 * 1 2 3 33 33 H 1.00894 * 111.00341 * 208.95498 * 4 2 1 34 34 H 1.08997 * 109.47531 * 60.00025 * 5 4 2 35 35 H 1.09000 * 109.47385 * 300.00142 * 5 4 2 36 36 H 0.96998 * 120.00220 * 359.97438 * 8 6 5 37 37 H 0.97007 * 120.00025 * 359.97438 * 12 11 9 38 38 H 1.08996 * 110.72363 * 271.93722 * 19 17 2 39 39 H 1.08998 * 110.71881 * 35.21517 * 19 17 2 40 40 H 1.09001 * 109.88580 * 97.22455 * 20 19 17 41 41 H 1.09003 * 109.88894 * 218.23992 * 20 19 17 42 42 H 1.08997 * 109.46992 * 305.50917 * 24 22 21 43 43 H 1.08997 * 109.46771 * 65.51059 * 24 22 21 44 44 H 1.09003 * 109.47158 * 65.00506 * 26 25 24 45 45 H 1.08998 * 109.47421 * 185.00908 * 26 25 24 46 46 H 1.09006 * 109.46630 * 305.00648 * 26 25 24 47 47 H 1.08994 * 117.49875 * 0.02562 * 27 25 24 48 48 H 1.08998 * 117.49755 * 145.01681 * 27 25 24 49 49 H 1.09001 * 117.50097 * 252.50403 * 28 27 25 50 50 H 1.09001 * 117.50195 * 107.49118 * 28 27 25 51 51 H 1.09005 * 110.35039 * 265.25033 * 29 21 20 52 52 H 1.09005 * 110.40578 * 142.91840 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5874 -0.5219 -3.5560 7 8 2.8670 -1.6990 -3.4703 8 7 2.7283 0.1204 -4.7325 9 6 3.1872 -0.5570 -5.8326 10 1 3.4362 -1.6052 -5.7564 11 6 3.3320 0.1050 -7.0457 12 7 3.0286 1.3802 -7.1385 13 14 3.9579 -0.8177 -8.5443 14 1 4.0207 0.1071 -9.7045 15 1 3.0360 -1.9396 -8.8557 16 1 5.3140 -1.3545 -8.2646 17 6 2.0400 -0.7212 1.2492 18 1 1.6997 -1.7566 1.2664 19 6 3.5866 -0.6426 1.3444 20 6 3.8462 -0.7624 2.8609 21 7 2.6105 -0.3598 3.5485 22 6 2.4232 -0.3452 4.8831 23 8 1.3575 0.0076 5.3420 24 6 3.5381 -0.7674 5.8051 25 6 3.0263 -0.7907 7.2467 26 6 2.9643 0.5682 7.9471 27 6 3.3762 -2.0109 8.1009 28 6 1.9453 -1.8154 7.5961 29 6 1.6099 0.0259 2.5363 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.9173 -1.1205 -1.0287 34 1 2.7588 1.0461 -2.1182 35 1 1.0871 0.6162 -2.5525 36 1 2.5044 1.0617 -4.8010 37 1 2.7032 1.8593 -6.3603 38 1 4.0487 -1.4709 0.8075 39 1 3.9481 0.3135 0.9657 40 1 4.0923 -1.7936 3.1145 41 1 4.6653 -0.1040 3.1501 42 1 3.8832 -1.7628 5.5258 43 1 4.3638 -0.0604 5.7241 44 1 2.2310 1.2013 7.4476 45 1 2.6738 0.4275 8.9882 46 1 3.9442 1.0438 7.9044 47 1 3.9713 -2.7968 7.6359 48 1 3.5626 -1.8457 9.1620 49 1 1.1900 -1.5217 8.3251 50 1 1.5985 -2.4729 6.7988 51 1 1.6307 1.1037 2.3742 52 1 0.6143 -0.2928 2.8453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699945551.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:41 Heat of formation + Delta-G solvation = -76.818196 kcal Electronic energy + Delta-G solvation = -29016.767362 eV Core-core repulsion = 25015.504157 eV Total energy + Delta-G solvation = -4001.263205 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.36684 -40.39569 -39.59545 -38.24824 -36.99802 -36.23460 -33.39755 -32.95458 -31.47485 -30.76044 -29.37695 -28.48180 -28.02267 -26.02349 -24.49645 -23.29886 -22.93182 -21.51828 -21.11861 -20.86167 -19.95919 -19.50833 -18.40453 -18.06968 -17.40804 -16.90027 -16.81809 -16.46960 -16.18389 -15.81688 -15.52258 -15.42746 -15.33923 -14.94336 -14.78256 -14.41282 -14.10374 -14.03294 -13.69146 -13.60257 -13.45621 -13.35681 -13.27517 -13.17259 -12.97475 -12.89317 -12.76496 -12.37732 -12.31160 -12.15123 -11.97509 -11.91208 -11.88241 -11.73044 -11.54688 -11.51098 -11.26697 -10.91627 -10.48259 -10.39557 -10.10269 -9.67771 -9.38654 -8.91699 -6.05787 1.53405 1.55629 1.63386 1.83483 1.90823 2.01578 2.41083 2.77807 2.86502 3.17685 3.31406 3.45395 3.53107 3.67133 3.74855 3.84585 3.89664 4.06486 4.11937 4.16888 4.21512 4.25654 4.29517 4.35962 4.38629 4.51060 4.54051 4.55386 4.62042 4.69079 4.79029 4.80191 4.84618 4.89254 4.94752 4.97586 5.00338 5.04220 5.05705 5.12862 5.19414 5.25342 5.26830 5.36938 5.39788 5.60772 5.95190 6.02009 6.39057 6.50574 6.58980 6.75394 7.16236 7.45301 7.93286 8.55936 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.032199 B = 0.001684 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.394229 B =16627.507983 C =16940.303211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.100 3.900 3 H 0.057 0.943 4 N -0.676 5.676 5 C 0.066 3.934 6 C 0.442 3.558 7 O -0.616 6.616 8 N -0.587 5.587 9 C -0.410 4.410 10 H 0.074 0.926 11 C -0.042 4.042 12 N -0.917 5.917 13 Si 1.133 2.867 14 H -0.274 1.274 15 H -0.274 1.274 16 H -0.271 1.271 17 C -0.092 4.092 18 H 0.085 0.915 19 C -0.133 4.133 20 C 0.103 3.897 21 N -0.623 5.623 22 C 0.522 3.478 23 O -0.574 6.574 24 C -0.094 4.094 25 C -0.124 4.124 26 C -0.110 4.110 27 C -0.155 4.155 28 C -0.176 4.176 29 C 0.118 3.882 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.348 0.652 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.384 0.616 37 H 0.259 0.741 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.118 0.882 44 H 0.042 0.958 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.107 0.893 48 H 0.105 0.895 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.070 0.930 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.072 -0.525 28.501 28.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.010 4.010 3 H 0.075 0.925 4 N -0.310 5.310 5 C -0.067 4.067 6 C 0.230 3.770 7 O -0.502 6.502 8 N -0.226 5.226 9 C -0.540 4.540 10 H 0.092 0.908 11 C -0.241 4.241 12 N -0.556 5.556 13 Si 0.953 3.047 14 H -0.198 1.198 15 H -0.200 1.200 16 H -0.197 1.197 17 C -0.112 4.112 18 H 0.104 0.896 19 C -0.171 4.171 20 C -0.020 4.020 21 N -0.358 5.358 22 C 0.312 3.688 23 O -0.453 6.453 24 C -0.134 4.134 25 C -0.125 4.125 26 C -0.167 4.167 27 C -0.192 4.192 28 C -0.214 4.214 29 C -0.006 4.006 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.168 0.832 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.218 0.782 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.128 0.872 43 H 0.136 0.864 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.125 0.875 48 H 0.124 0.876 49 H 0.105 0.895 50 H 0.096 0.904 51 H 0.088 0.912 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.460 -1.205 27.110 27.248 hybrid contribution -0.211 0.879 1.478 1.733 sum 2.249 -0.326 28.589 28.679 Atomic orbital electron populations 1.21845 0.94262 1.02118 1.01763 1.21487 0.96167 0.95844 0.87485 0.92496 1.60117 1.34939 1.32490 1.03467 1.21576 1.02121 0.93814 0.89164 1.20862 0.82916 0.88003 0.85185 1.90494 1.56129 1.18108 1.85474 1.42000 1.59552 1.11970 1.09100 1.20527 1.45581 0.97300 0.90558 0.90820 1.27809 0.96290 0.96750 1.03204 1.70975 1.42773 1.09083 1.32789 0.82630 0.76739 0.73927 0.71380 1.19823 1.19972 1.19675 1.22384 0.96044 1.00255 0.92499 0.89615 1.22773 0.94879 1.03942 0.95490 1.22189 0.86462 1.01748 0.91551 1.48684 1.15829 1.66205 1.05033 1.20927 0.89664 0.76976 0.81225 1.90688 1.29296 1.49509 1.75856 1.21251 0.96259 1.04857 0.91007 1.21181 1.04364 0.92621 0.94291 1.21270 1.01889 0.94196 0.99389 1.23241 0.97347 0.98385 1.00216 1.22845 0.92739 1.02593 1.03185 1.22136 0.92630 0.99102 0.86689 0.93067 0.92866 0.90985 0.83227 0.91341 0.88162 0.78166 0.92998 0.89097 0.90070 0.89670 0.89160 0.87181 0.86410 0.93874 0.92009 0.91066 0.87481 0.87623 0.89518 0.90372 0.91150 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.23 71.98 0.66 -2.34 16 2 C 0.10 2.10 2.16 44.91 0.10 2.20 16 3 H 0.06 1.10 7.79 -2.39 -0.02 1.08 16 4 N -0.68 -19.62 5.93 -495.57 -2.94 -22.56 16 5 C 0.07 2.13 5.97 85.56 0.51 2.64 16 6 C 0.44 20.50 7.82 87.66 0.69 21.18 16 7 O -0.62 -33.56 15.78 -3.05 -0.05 -33.61 16 8 N -0.59 -29.39 5.28 -306.98 -1.62 -31.01 16 9 C -0.41 -23.24 9.68 84.04 0.81 -22.43 16 10 H 0.07 4.48 7.16 -2.91 -0.02 4.46 16 11 C -0.04 -2.28 5.50 84.93 0.47 -1.81 16 12 N -0.92 -50.78 13.68 21.66 0.30 -50.48 16 13 Si 1.13 48.06 29.92 68.60 2.05 50.11 16 14 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 15 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 16 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 17 C -0.09 -1.64 2.68 -9.40 -0.03 -1.67 16 18 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 19 C -0.13 -1.89 5.56 31.78 0.18 -1.72 16 20 C 0.10 1.18 6.48 86.73 0.56 1.74 16 21 N -0.62 -10.69 3.33 -811.66 -2.70 -13.39 16 22 C 0.52 10.36 7.71 87.66 0.68 11.03 16 23 O -0.57 -16.10 15.21 -3.04 -0.05 -16.14 16 24 C -0.09 -1.18 4.83 29.85 0.14 -1.04 16 25 C -0.12 -1.78 1.59 -52.18 -0.08 -1.86 16 26 C -0.11 -1.58 9.66 71.98 0.70 -0.89 16 27 C -0.16 -1.68 9.87 30.59 0.30 -1.38 16 28 C -0.18 -2.88 9.19 30.59 0.28 -2.60 16 29 C 0.12 2.17 5.42 86.85 0.47 2.64 16 30 H 0.05 1.14 7.45 -2.39 -0.02 1.12 16 31 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.07 1.27 7.33 -2.39 -0.02 1.26 16 33 H 0.35 10.30 6.90 -89.70 -0.62 9.68 16 34 H 0.07 1.89 8.05 -2.39 -0.02 1.87 16 35 H 0.10 3.00 7.44 -2.39 -0.02 2.98 16 36 H 0.38 17.64 6.73 -92.71 -0.62 17.02 16 37 H 0.26 13.85 6.78 -92.70 -0.63 13.23 16 38 H 0.09 1.32 7.77 -2.39 -0.02 1.31 16 39 H 0.08 1.13 8.03 -2.39 -0.02 1.11 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.11 0.97 7.93 -2.39 -0.02 0.95 16 43 H 0.12 1.01 8.13 -2.39 -0.02 0.99 16 44 H 0.04 0.83 7.60 -2.39 -0.02 0.81 16 45 H 0.06 0.78 8.09 -2.39 -0.02 0.77 16 46 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 47 H 0.11 0.88 8.08 -2.39 -0.02 0.86 16 48 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.07 1.27 8.04 -2.38 -0.02 1.25 16 52 H 0.07 1.42 7.95 -2.38 -0.02 1.40 16 Total: -1.00 -74.72 416.18 1.24 -73.48 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: -0.19 Total: 39.91 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 6.44 Total: 3.69 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -6.97 Total: -117.44 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -0.09 Total: -49.75 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.05 Total: 50.11 kcal Total: -74.72 1.24 -73.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699945551.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.338 kcal (2) G-P(sol) polarization free energy of solvation -74.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds