Wall clock time and date at job start Tue Mar 31 2020 20:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46950 * 2 1 4 4 N 1.46499 * 109.47552 * 119.99912 * 2 1 3 5 5 C 1.36937 * 119.99863 * 283.37723 * 4 2 1 6 6 H 1.07998 * 119.99924 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99685 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00443 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00002 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47115 * 89.99932 * 9 7 5 11 11 H 1.48498 * 109.47282 * 209.99708 * 9 7 5 12 12 H 1.48499 * 109.47103 * 330.00113 * 9 7 5 13 13 C 1.53005 * 109.47044 * 240.00376 * 2 1 3 14 14 H 1.08995 * 109.57920 * 287.78833 * 13 2 1 15 15 C 1.53188 * 109.58717 * 48.07287 * 13 2 1 16 16 C 1.53042 * 109.31382 * 174.56770 * 15 13 2 17 17 C 1.53038 * 109.53456 * 298.63489 * 16 15 13 18 18 C 1.53185 * 109.31528 * 61.36260 * 17 16 15 19 19 N 1.46918 * 108.77790 * 305.36560 * 18 17 16 20 20 C 1.34780 * 120.63405 * 233.63078 * 19 18 17 21 21 O 1.21280 * 120.00287 * 184.80164 * 20 19 18 22 22 C 1.50698 * 119.99640 * 4.80203 * 20 19 18 23 23 N 1.46505 * 109.47334 * 180.02562 * 22 20 19 24 24 C 1.46498 * 119.99735 * 270.00248 * 23 22 20 25 25 C 1.34778 * 119.99971 * 89.99704 * 23 22 20 26 26 O 1.21281 * 119.99721 * 0.02562 * 25 23 22 27 27 C 1.50693 * 119.99824 * 180.02562 * 25 23 22 28 28 C 1.52995 * 117.50411 * 248.74904 * 27 25 23 29 29 C 1.52998 * 117.49854 * 180.08844 * 27 25 23 30 30 H 1.08997 * 109.47417 * 53.78258 * 1 2 3 31 31 H 1.09001 * 109.47070 * 173.78598 * 1 2 3 32 32 H 1.09007 * 109.47131 * 293.78431 * 1 2 3 33 33 H 0.96996 * 119.99719 * 103.37116 * 4 2 1 34 34 H 0.96993 * 120.00664 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.49701 * 294.51846 * 15 13 2 36 36 H 1.09003 * 109.50247 * 54.61299 * 15 13 2 37 37 H 1.09005 * 109.45872 * 58.64955 * 16 15 13 38 38 H 1.08998 * 109.46321 * 178.61004 * 16 15 13 39 39 H 1.08999 * 109.49396 * 181.31230 * 17 16 15 40 40 H 1.09000 * 109.49893 * 301.40980 * 17 16 15 41 41 H 1.09004 * 109.58678 * 65.15227 * 18 17 16 42 42 H 1.09004 * 109.58887 * 185.57489 * 18 17 16 43 43 H 1.08998 * 109.47510 * 300.00155 * 22 20 19 44 44 H 1.08999 * 109.47465 * 60.00388 * 22 20 19 45 45 H 1.09008 * 109.47240 * 89.99692 * 24 23 22 46 46 H 1.09000 * 109.47053 * 209.99415 * 24 23 22 47 47 H 1.08997 * 109.47497 * 329.99607 * 24 23 22 48 48 H 1.09005 * 115.55165 * 34.42484 * 27 25 23 49 49 H 1.09004 * 117.49470 * 359.97438 * 28 27 25 50 50 H 1.08996 * 117.50220 * 145.01976 * 28 27 25 51 51 H 1.09004 * 117.49982 * 214.98156 * 29 27 25 52 52 H 1.09002 * 117.49863 * 0.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.9880 -0.0599 2.4112 6 1 1.6043 0.9468 2.4877 7 6 2.4503 -0.7144 3.5447 8 7 2.9174 -1.9414 3.4516 9 14 2.4095 0.1462 5.2021 10 1 1.1142 -0.1324 5.8728 11 1 3.5225 -0.3552 6.0478 12 1 2.5594 1.6102 5.0036 13 6 2.0400 -0.7212 -1.2493 14 1 1.8659 -1.7925 -1.1493 15 6 1.3020 -0.1940 -2.4839 16 6 1.9092 -0.8192 -3.7419 17 6 3.3822 -0.4190 -3.8523 18 6 4.1438 -0.9487 -2.6332 19 7 3.4780 -0.4691 -1.4146 20 6 4.1729 0.1901 -0.4664 21 8 3.6328 0.5044 0.5730 22 6 5.6212 0.5366 -0.6978 23 7 6.1468 1.2451 0.4719 24 6 6.0625 2.7059 0.5424 25 6 6.7077 0.5528 1.4832 26 8 6.7777 -0.6566 1.4246 27 6 7.2478 1.2815 2.6866 28 6 8.7645 1.2868 2.8874 29 6 7.8742 0.4395 3.7999 30 1 -0.3634 0.6072 -0.8291 31 1 -0.3633 -1.0216 -0.1112 32 1 -0.3634 0.4145 0.9404 33 1 2.3632 -1.5945 1.1274 34 1 3.2408 -2.3987 4.2435 35 1 0.2469 -0.4602 -2.4183 36 1 1.4017 0.8904 -2.5320 37 1 1.8313 -1.9048 -3.6818 38 1 1.3698 -0.4647 -4.6202 39 1 3.8079 -0.8454 -4.7606 40 1 3.4624 0.6674 -3.8875 41 1 4.1414 -2.0386 -2.6461 42 1 5.1705 -0.5833 -2.6567 43 1 6.1929 -0.3778 -0.8554 44 1 5.7061 1.1744 -1.5776 45 1 5.1244 2.9933 1.0174 46 1 6.8983 3.0903 1.1270 47 1 6.1020 3.1212 -0.4646 48 1 6.6981 2.1757 2.9806 49 1 9.3717 0.7628 2.1493 50 1 9.2126 2.1842 3.3138 51 1 7.7370 0.7800 4.8263 52 1 7.8961 -0.6415 3.6617 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707430479.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:23 Heat of formation + Delta-G solvation = 19.955274 kcal Electronic energy + Delta-G solvation = -32560.767872 eV Core-core repulsion = 28563.701079 eV Total energy + Delta-G solvation = -3997.066792 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.27954 -39.42938 -36.98652 -35.92485 -35.28813 -34.68302 -32.52852 -32.10648 -29.79456 -28.84070 -27.67874 -26.34850 -24.88296 -24.15343 -23.29498 -22.50617 -22.25379 -20.61811 -19.91881 -19.03644 -18.38216 -17.18188 -16.82614 -16.38240 -16.01806 -15.22684 -15.01199 -14.76237 -14.63947 -14.27133 -14.13834 -13.79087 -13.65058 -13.47120 -13.10413 -12.84938 -12.70378 -12.57296 -12.49041 -12.40747 -12.09743 -12.01766 -11.87145 -11.43066 -11.37331 -11.32014 -11.05959 -10.86920 -10.79188 -10.60524 -10.52302 -10.43749 -10.36412 -10.26015 -10.05951 -9.61840 -9.41793 -9.32668 -8.78241 -8.53781 -7.95437 -7.83149 -6.35426 -5.36190 -2.56499 2.81801 3.18948 3.50527 3.61654 3.64748 3.65228 3.68095 4.08346 4.71521 4.80948 4.84984 4.92441 4.96683 4.98371 5.05469 5.17039 5.20218 5.27819 5.29339 5.43295 5.48664 5.52692 5.60238 5.62391 5.67955 5.69069 5.83947 5.89237 5.92552 5.93754 5.97729 5.98463 6.06560 6.09823 6.13552 6.17050 6.20482 6.34737 6.40429 6.51628 6.54341 6.66810 6.89679 7.02920 7.10992 7.45109 7.65191 8.03088 8.09818 8.60235 8.79619 9.15614 9.91379 10.49782 10.84944 11.87974 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009157 B = 0.005984 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.941986 B = 4678.141791 C = 6950.401263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.055 0.945 4 N -0.689 5.689 5 C -0.181 4.181 6 H 0.059 0.941 7 C -0.022 4.022 8 N -0.937 5.937 9 Si 0.892 3.108 10 H -0.297 1.297 11 H -0.296 1.296 12 H -0.288 1.288 13 C 0.148 3.852 14 H 0.062 0.938 15 C -0.127 4.127 16 C -0.119 4.119 17 C -0.133 4.133 18 C 0.112 3.888 19 N -0.616 5.616 20 C 0.454 3.546 21 O -0.418 6.418 22 C 0.103 3.897 23 N -0.597 5.597 24 C 0.085 3.915 25 C 0.554 3.446 26 O -0.525 6.525 27 C -0.184 4.184 28 C -0.158 4.158 29 C -0.145 4.145 30 H 0.034 0.966 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.377 0.623 34 H 0.246 0.754 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.122 0.878 49 H 0.096 0.904 50 H 0.100 0.900 51 H 0.100 0.900 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.589 8.432 -15.284 19.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.073 0.927 4 N -0.329 5.329 5 C -0.313 4.313 6 H 0.077 0.923 7 C -0.216 4.216 8 N -0.588 5.588 9 Si 0.726 3.274 10 H -0.226 1.226 11 H -0.223 1.223 12 H -0.215 1.215 13 C 0.044 3.956 14 H 0.080 0.920 15 C -0.165 4.165 16 C -0.156 4.156 17 C -0.171 4.171 18 C -0.012 4.012 19 N -0.356 5.356 20 C 0.237 3.763 21 O -0.283 6.283 22 C -0.024 4.024 23 N -0.330 5.330 24 C -0.058 4.058 25 C 0.343 3.657 26 O -0.400 6.400 27 C -0.205 4.205 28 C -0.196 4.196 29 C -0.182 4.182 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.210 0.790 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.140 0.860 49 H 0.114 0.886 50 H 0.118 0.882 51 H 0.119 0.881 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.349 8.122 -14.515 18.184 hybrid contribution -0.024 0.182 0.815 0.835 sum 7.325 8.304 -13.700 17.615 Atomic orbital electron populations 1.22581 1.00005 1.00050 1.00251 1.20330 0.90280 0.96542 0.85379 0.92743 1.42219 1.73292 1.15206 1.02204 1.18896 1.31188 0.96604 0.84658 0.92343 1.24515 1.03375 0.96724 0.97014 1.69628 1.49846 1.11861 1.27460 0.86371 0.76690 0.78457 0.85925 1.22593 1.22300 1.21457 1.21484 0.79261 0.99437 0.95381 0.92000 1.22002 0.99761 1.00641 0.94142 1.21514 0.95430 1.00785 0.97903 1.21914 0.96243 1.01308 0.97671 1.21564 0.96015 0.99058 0.84559 1.47913 1.08885 1.59037 1.19729 1.21052 0.88782 0.81901 0.84575 1.91278 1.67505 1.47189 1.22347 1.21298 0.94146 0.98891 0.88091 1.47164 1.59450 1.07020 1.19345 1.21757 1.02479 0.79429 1.02170 1.19471 0.76932 0.86973 0.82366 1.90710 1.56902 1.13826 1.78563 1.22131 0.96977 1.03485 0.97940 1.22919 0.90500 1.02738 1.03403 1.22930 1.00877 0.99603 0.94797 0.94654 0.93944 0.92589 0.78992 0.94348 0.90775 0.91842 0.91974 0.92222 0.91393 0.91769 0.91978 0.90616 0.88341 0.89049 0.92056 0.91024 0.91648 0.85991 0.88590 0.88179 0.88144 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 8.48 37.16 0.31 -2.89 16 2 C 0.18 3.89 1.83 -67.93 -0.12 3.77 16 3 H 0.05 1.26 6.40 -51.93 -0.33 0.92 16 4 N -0.69 -18.33 3.26 -53.42 -0.17 -18.51 16 5 C -0.18 -5.38 8.09 -15.06 -0.12 -5.50 16 6 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 7 C -0.02 -0.70 5.50 -17.43 -0.10 -0.79 16 8 N -0.94 -30.86 13.06 55.49 0.72 -30.13 16 9 Si 0.89 24.47 29.55 -169.99 -5.02 19.45 16 10 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 11 H -0.30 -8.23 7.11 56.52 0.40 -7.83 16 12 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 13 C 0.15 2.53 2.62 -67.60 -0.18 2.36 16 14 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 15 C -0.13 -1.65 4.45 -26.61 -0.12 -1.77 16 16 C -0.12 -1.24 5.88 -26.69 -0.16 -1.39 16 17 C -0.13 -1.27 6.08 -26.62 -0.16 -1.43 16 18 C 0.11 1.33 6.35 -3.72 -0.02 1.31 16 19 N -0.62 -10.03 2.97 -165.23 -0.49 -10.52 16 20 C 0.45 8.65 7.50 -10.99 -0.08 8.57 16 21 O -0.42 -9.99 9.26 5.56 0.05 -9.94 16 22 C 0.10 1.58 4.28 -5.19 -0.02 1.56 16 23 N -0.60 -9.73 2.36 -182.96 -0.43 -10.16 16 24 C 0.08 1.04 10.05 59.85 0.60 1.64 16 25 C 0.55 10.70 7.46 -10.99 -0.08 10.61 16 26 O -0.52 -12.40 15.84 5.56 0.09 -12.31 16 27 C -0.18 -2.94 4.79 -91.78 -0.44 -3.37 16 28 C -0.16 -1.93 10.24 -26.70 -0.27 -2.21 16 29 C -0.14 -2.25 10.05 -26.70 -0.27 -2.52 16 30 H 0.03 0.55 6.85 -51.93 -0.36 0.20 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.18 7.95 -51.92 -0.41 0.77 16 33 H 0.38 11.10 7.70 -40.82 -0.31 10.78 16 34 H 0.25 8.01 8.31 -40.82 -0.34 7.67 16 35 H 0.07 0.93 6.83 -51.93 -0.35 0.58 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.76 5.93 -51.93 -0.31 0.46 16 43 H 0.10 1.57 7.02 -51.93 -0.36 1.20 16 44 H 0.09 1.02 7.64 -51.93 -0.40 0.63 16 45 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 46 H 0.07 0.72 6.64 -51.93 -0.35 0.38 16 47 H 0.06 0.61 7.89 -51.93 -0.41 0.20 16 48 H 0.12 1.79 7.27 -51.93 -0.38 1.42 16 49 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 51 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 52 H 0.11 1.93 7.67 -51.93 -0.40 1.53 16 LS Contribution 400.86 15.07 6.04 6.04 Total: -1.00 -38.33 400.86 -9.43 -47.76 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -8.99 Total: 10.40 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -1.23 Total: 7.93 kcal Atomic # 7 Polarization: -68.95 SS G_CDS: -0.37 Total: -69.33 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: 0.14 Total: -22.25 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -5.02 Total: 19.45 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -38.33 -9.43 -47.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707430479.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.717 kcal (2) G-P(sol) polarization free energy of solvation -38.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds