Wall clock time and date at job start Tue Mar 31 2020 20:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46950 * 2 1 4 4 N 1.46499 * 109.47552 * 119.99912 * 2 1 3 5 5 C 1.36937 * 119.99863 * 283.37723 * 4 2 1 6 6 H 1.07998 * 119.99924 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99685 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00443 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00002 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47115 * 89.99932 * 9 7 5 11 11 H 1.48498 * 109.47282 * 209.99708 * 9 7 5 12 12 H 1.48499 * 109.47103 * 330.00113 * 9 7 5 13 13 C 1.53005 * 109.47044 * 240.00376 * 2 1 3 14 14 H 1.08995 * 109.57920 * 287.78833 * 13 2 1 15 15 C 1.53188 * 109.58717 * 48.07287 * 13 2 1 16 16 C 1.53042 * 109.31382 * 174.56770 * 15 13 2 17 17 C 1.53038 * 109.53456 * 298.63489 * 16 15 13 18 18 C 1.53185 * 109.31528 * 61.36260 * 17 16 15 19 19 N 1.46918 * 108.77790 * 305.36560 * 18 17 16 20 20 C 1.34780 * 120.63405 * 233.63078 * 19 18 17 21 21 O 1.21280 * 120.00287 * 184.80164 * 20 19 18 22 22 C 1.50698 * 119.99640 * 4.80203 * 20 19 18 23 23 N 1.46505 * 109.47334 * 180.02562 * 22 20 19 24 24 C 1.46498 * 119.99735 * 270.00248 * 23 22 20 25 25 C 1.34778 * 119.99971 * 89.99704 * 23 22 20 26 26 O 1.21281 * 119.99721 * 0.02562 * 25 23 22 27 27 C 1.50693 * 119.99824 * 180.02562 * 25 23 22 28 28 C 1.52995 * 117.50411 * 248.74904 * 27 25 23 29 29 C 1.52998 * 117.49854 * 180.08844 * 27 25 23 30 30 H 1.08997 * 109.47417 * 53.78258 * 1 2 3 31 31 H 1.09001 * 109.47070 * 173.78598 * 1 2 3 32 32 H 1.09007 * 109.47131 * 293.78431 * 1 2 3 33 33 H 0.96996 * 119.99719 * 103.37116 * 4 2 1 34 34 H 0.96993 * 120.00664 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.49701 * 294.51846 * 15 13 2 36 36 H 1.09003 * 109.50247 * 54.61299 * 15 13 2 37 37 H 1.09005 * 109.45872 * 58.64955 * 16 15 13 38 38 H 1.08998 * 109.46321 * 178.61004 * 16 15 13 39 39 H 1.08999 * 109.49396 * 181.31230 * 17 16 15 40 40 H 1.09000 * 109.49893 * 301.40980 * 17 16 15 41 41 H 1.09004 * 109.58678 * 65.15227 * 18 17 16 42 42 H 1.09004 * 109.58887 * 185.57489 * 18 17 16 43 43 H 1.08998 * 109.47510 * 300.00155 * 22 20 19 44 44 H 1.08999 * 109.47465 * 60.00388 * 22 20 19 45 45 H 1.09008 * 109.47240 * 89.99692 * 24 23 22 46 46 H 1.09000 * 109.47053 * 209.99415 * 24 23 22 47 47 H 1.08997 * 109.47497 * 329.99607 * 24 23 22 48 48 H 1.09005 * 115.55165 * 34.42484 * 27 25 23 49 49 H 1.09004 * 117.49470 * 359.97438 * 28 27 25 50 50 H 1.08996 * 117.50220 * 145.01976 * 28 27 25 51 51 H 1.09004 * 117.49982 * 214.98156 * 29 27 25 52 52 H 1.09002 * 117.49863 * 0.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.9880 -0.0599 2.4112 6 1 1.6043 0.9468 2.4877 7 6 2.4503 -0.7144 3.5447 8 7 2.9174 -1.9414 3.4516 9 14 2.4095 0.1462 5.2021 10 1 1.1142 -0.1324 5.8728 11 1 3.5225 -0.3552 6.0478 12 1 2.5594 1.6102 5.0036 13 6 2.0400 -0.7212 -1.2493 14 1 1.8659 -1.7925 -1.1493 15 6 1.3020 -0.1940 -2.4839 16 6 1.9092 -0.8192 -3.7419 17 6 3.3822 -0.4190 -3.8523 18 6 4.1438 -0.9487 -2.6332 19 7 3.4780 -0.4691 -1.4146 20 6 4.1729 0.1901 -0.4664 21 8 3.6328 0.5044 0.5730 22 6 5.6212 0.5366 -0.6978 23 7 6.1468 1.2451 0.4719 24 6 6.0625 2.7059 0.5424 25 6 6.7077 0.5528 1.4832 26 8 6.7777 -0.6566 1.4246 27 6 7.2478 1.2815 2.6866 28 6 8.7645 1.2868 2.8874 29 6 7.8742 0.4395 3.7999 30 1 -0.3634 0.6072 -0.8291 31 1 -0.3633 -1.0216 -0.1112 32 1 -0.3634 0.4145 0.9404 33 1 2.3632 -1.5945 1.1274 34 1 3.2408 -2.3987 4.2435 35 1 0.2469 -0.4602 -2.4183 36 1 1.4017 0.8904 -2.5320 37 1 1.8313 -1.9048 -3.6818 38 1 1.3698 -0.4647 -4.6202 39 1 3.8079 -0.8454 -4.7606 40 1 3.4624 0.6674 -3.8875 41 1 4.1414 -2.0386 -2.6461 42 1 5.1705 -0.5833 -2.6567 43 1 6.1929 -0.3778 -0.8554 44 1 5.7061 1.1744 -1.5776 45 1 5.1244 2.9933 1.0174 46 1 6.8983 3.0903 1.1270 47 1 6.1020 3.1212 -0.4646 48 1 6.6981 2.1757 2.9806 49 1 9.3717 0.7628 2.1493 50 1 9.2126 2.1842 3.3138 51 1 7.7370 0.7800 4.8263 52 1 7.8961 -0.6415 3.6617 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707430479.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:22 Heat of formation + Delta-G solvation = -6.368836 kcal Electronic energy + Delta-G solvation = -32561.909371 eV Core-core repulsion = 28563.701079 eV Total energy + Delta-G solvation = -3998.208292 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.65289 -40.79419 -38.27612 -37.22919 -36.87218 -36.18202 -34.20531 -33.59478 -31.49599 -30.11900 -29.30238 -27.52741 -26.35634 -25.77835 -24.57669 -23.99936 -23.36471 -21.81596 -21.38006 -20.41628 -19.76752 -18.80749 -18.45131 -17.83048 -17.33609 -16.77448 -16.53967 -16.19390 -15.97809 -15.62333 -15.42727 -15.27868 -15.00711 -14.78248 -14.67609 -14.18050 -14.13847 -13.92493 -13.77296 -13.61024 -13.52647 -13.44335 -13.18609 -12.95638 -12.83541 -12.69727 -12.54747 -12.49597 -12.39852 -12.14454 -11.92677 -11.67091 -11.59865 -11.58096 -11.43736 -11.38279 -11.16330 -10.87511 -10.74967 -10.23096 -9.42273 -9.26173 -8.51525 -7.74511 -4.91546 1.36982 1.40669 1.44195 1.47966 1.97158 2.07905 2.39191 2.64643 2.87400 3.54936 3.58973 3.67866 3.78341 3.88865 3.93634 3.98058 4.07067 4.14016 4.16726 4.28415 4.31377 4.33909 4.39018 4.40097 4.44944 4.65624 4.66064 4.67961 4.74980 4.78503 4.82480 4.89091 4.93414 4.96753 4.98449 5.08338 5.09531 5.16265 5.17208 5.21017 5.28977 5.42460 5.46668 5.51262 5.57073 5.62097 5.98688 6.35265 6.44332 6.75674 7.20473 7.49916 7.73178 8.30870 8.53255 9.50761 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009157 B = 0.005984 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.941986 B = 4678.141791 C = 6950.401263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.183 3.817 3 H 0.038 0.962 4 N -0.694 5.694 5 C -0.157 4.157 6 H 0.053 0.947 7 C -0.093 4.093 8 N -0.977 5.977 9 Si 0.951 3.049 10 H -0.292 1.292 11 H -0.305 1.305 12 H -0.276 1.276 13 C 0.151 3.849 14 H 0.041 0.959 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.123 4.123 18 C 0.103 3.897 19 N -0.615 5.615 20 C 0.446 3.554 21 O -0.482 6.482 22 C 0.105 3.895 23 N -0.595 5.595 24 C 0.081 3.919 25 C 0.538 3.462 26 O -0.587 6.587 27 C -0.206 4.206 28 C -0.108 4.108 29 C -0.172 4.172 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.028 0.972 33 H 0.357 0.643 34 H 0.235 0.765 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.144 0.856 45 H 0.036 0.964 46 H 0.096 0.904 47 H 0.103 0.897 48 H 0.135 0.865 49 H 0.098 0.902 50 H 0.143 0.857 51 H 0.114 0.886 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.292 11.217 -18.405 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.075 3.925 3 H 0.055 0.945 4 N -0.332 5.332 5 C -0.291 4.291 6 H 0.071 0.929 7 C -0.283 4.283 8 N -0.632 5.632 9 Si 0.784 3.216 10 H -0.220 1.220 11 H -0.232 1.232 12 H -0.202 1.202 13 C 0.046 3.954 14 H 0.059 0.941 15 C -0.155 4.155 16 C -0.154 4.154 17 C -0.161 4.161 18 C -0.020 4.020 19 N -0.353 5.353 20 C 0.230 3.770 21 O -0.352 6.352 22 C -0.022 4.022 23 N -0.326 5.326 24 C -0.060 4.060 25 C 0.328 3.672 26 O -0.467 6.467 27 C -0.227 4.227 28 C -0.145 4.145 29 C -0.210 4.210 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.188 0.812 34 H 0.044 0.956 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.115 0.885 43 H 0.108 0.892 44 H 0.161 0.839 45 H 0.055 0.945 46 H 0.114 0.886 47 H 0.121 0.879 48 H 0.152 0.848 49 H 0.117 0.883 50 H 0.161 0.839 51 H 0.132 0.868 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.015 10.984 -17.741 22.352 hybrid contribution -0.271 -0.654 1.626 1.773 sum 7.744 10.331 -16.114 20.649 Atomic orbital electron populations 1.22420 0.98205 1.00667 1.00458 1.20466 0.91223 0.95550 0.85247 0.94456 1.42326 1.73270 1.14352 1.03211 1.19086 1.28248 0.95818 0.85907 0.92864 1.25191 1.05006 0.97653 1.00439 1.69819 1.52433 1.13552 1.27444 0.85392 0.76322 0.77940 0.81965 1.22001 1.23232 1.20179 1.21351 0.80620 0.97779 0.95610 0.94092 1.21923 0.99641 1.00795 0.93149 1.21525 0.96210 1.00497 0.97140 1.21879 0.95202 1.01855 0.97191 1.21912 0.97329 0.99012 0.83703 1.48052 1.08639 1.57927 1.20696 1.21780 0.90171 0.80938 0.84074 1.91231 1.69036 1.50284 1.24659 1.21436 0.91245 0.99849 0.89636 1.47367 1.57792 1.08678 1.18736 1.22001 1.02248 0.76974 1.04800 1.20194 0.76744 0.86614 0.83619 1.90669 1.59645 1.16409 1.79989 1.22223 1.00048 1.03577 0.96802 1.23054 0.87876 1.02686 1.00839 1.22939 1.03950 0.98118 0.95983 0.90636 0.93910 0.95246 0.81243 0.95601 0.90123 0.91459 0.92263 0.89589 0.88383 0.90934 0.92454 0.88546 0.89165 0.83871 0.94475 0.88552 0.87880 0.84768 0.88344 0.83926 0.86750 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.97 8.48 71.98 0.61 -5.36 16 2 C 0.18 7.88 1.83 44.99 0.08 7.96 16 3 H 0.04 1.76 6.40 -2.39 -0.02 1.75 16 4 N -0.69 -38.71 3.26 -322.94 -1.05 -39.76 16 5 C -0.16 -9.73 8.09 84.03 0.68 -9.05 16 6 H 0.05 3.29 7.83 -2.91 -0.02 3.27 16 7 C -0.09 -6.05 5.50 84.86 0.47 -5.59 16 8 N -0.98 -68.07 13.06 21.65 0.28 -67.79 16 9 Si 0.95 52.51 29.55 68.60 2.03 54.54 16 10 H -0.29 -15.66 7.11 99.48 0.71 -14.95 16 11 H -0.30 -17.10 7.11 99.48 0.71 -16.40 16 12 H -0.28 -14.46 7.11 99.48 0.71 -13.76 16 13 C 0.15 5.12 2.62 44.97 0.12 5.24 16 14 H 0.04 1.56 8.10 -2.39 -0.02 1.55 16 15 C -0.12 -2.73 4.45 30.67 0.14 -2.59 16 16 C -0.12 -1.98 5.88 30.62 0.18 -1.80 16 17 C -0.12 -1.83 6.08 30.67 0.19 -1.64 16 18 C 0.10 2.20 6.35 86.36 0.55 2.75 16 19 N -0.62 -19.68 2.97 -795.05 -2.36 -22.05 16 20 C 0.45 17.13 7.50 87.66 0.66 17.79 16 21 O -0.48 -23.92 9.26 -3.03 -0.03 -23.94 16 22 C 0.10 3.12 4.28 85.63 0.37 3.49 16 23 N -0.59 -19.11 2.36 -851.13 -2.01 -21.12 16 24 C 0.08 1.83 10.05 127.77 1.28 3.11 16 25 C 0.54 21.37 7.46 87.65 0.65 22.02 16 26 O -0.59 -29.52 15.84 -3.03 -0.05 -29.57 16 27 C -0.21 -6.53 4.79 -11.54 -0.06 -6.58 16 28 C -0.11 -2.41 10.24 30.62 0.31 -2.10 16 29 C -0.17 -5.50 10.05 30.62 0.31 -5.19 16 30 H 0.07 2.23 6.85 -2.39 -0.02 2.22 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.03 1.24 7.95 -2.38 -0.02 1.22 16 33 H 0.36 22.34 7.70 -92.71 -0.71 21.63 16 34 H 0.24 16.22 8.31 -92.71 -0.77 15.45 16 35 H 0.08 1.79 6.83 -2.38 -0.02 1.78 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 42 H 0.10 1.66 5.93 -2.38 -0.01 1.65 16 43 H 0.09 2.87 7.02 -2.39 -0.02 2.86 16 44 H 0.14 2.67 7.64 -2.39 -0.02 2.66 16 45 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 46 H 0.10 1.67 6.64 -2.39 -0.02 1.66 16 47 H 0.10 1.52 7.89 -2.39 -0.02 1.50 16 48 H 0.13 3.84 7.27 -2.38 -0.02 3.83 16 49 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 50 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.11 3.22 8.14 -2.38 -0.02 3.20 16 52 H 0.07 2.83 7.67 -2.39 -0.02 2.81 16 Total: -1.00 -93.16 400.86 3.54 -89.63 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: 0.19 Total: 37.58 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: 6.53 Total: 22.48 kcal Atomic # 7 Polarization: -145.57 SS G_CDS: -5.14 Total: -150.71 kcal Atomic # 8 Polarization: -53.43 SS G_CDS: -0.08 Total: -53.51 kcal Atomic # 14 Polarization: 52.51 SS G_CDS: 2.03 Total: 54.54 kcal Total: -93.16 3.54 -89.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707430479.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.260 kcal (2) G-P(sol) polarization free energy of solvation -93.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds