Wall clock time and date at job start Tue Mar 31 2020 20:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47195 * 2 1 4 4 N 1.46903 * 109.47198 * 239.99698 * 2 1 3 5 5 C 1.46905 * 110.99539 * 85.00268 * 4 2 1 6 6 C 1.50702 * 109.46641 * 179.97438 * 5 4 2 7 7 O 1.21284 * 120.00344 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99676 * 179.97438 * 6 5 4 9 9 C 1.37094 * 120.00242 * 179.97438 * 8 6 5 10 10 H 1.08006 * 119.99757 * 0.02562 * 9 8 6 11 11 C 1.38944 * 120.00579 * 180.02562 * 9 8 6 12 12 N 1.31416 * 119.99775 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00360 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46922 * 90.00535 * 13 11 9 15 15 H 1.48505 * 109.47345 * 210.00166 * 13 11 9 16 16 H 1.48498 * 109.47207 * 330.00346 * 13 11 9 17 17 C 1.53005 * 109.46785 * 120.00207 * 2 1 3 18 18 H 1.08997 * 109.58445 * 175.65019 * 17 2 1 19 19 C 1.53187 * 109.70380 * 55.29283 * 17 2 1 20 20 C 1.53049 * 109.30927 * 185.50821 * 19 17 2 21 21 C 1.53038 * 109.53470 * 61.36835 * 20 19 17 22 22 C 1.53628 * 109.24226 * 298.50669 * 21 20 19 23 23 N 1.46926 * 108.54230 * 54.86123 * 22 21 20 24 24 C 1.34776 * 120.62849 * 126.36679 * 23 22 21 25 25 O 1.21280 * 119.99542 * 173.30726 * 24 23 22 26 26 C 1.50695 * 120.00230 * 353.31117 * 24 23 22 27 27 C 1.52995 * 109.47201 * 180.02562 * 26 24 23 28 28 C 1.53005 * 117.50012 * 174.99941 * 27 26 24 29 29 C 1.53005 * 60.03311 * 107.49992 * 28 27 26 30 30 H 1.09002 * 109.47616 * 291.05298 * 1 2 3 31 31 H 1.09002 * 109.46880 * 51.05374 * 1 2 3 32 32 H 1.09001 * 109.47316 * 171.04689 * 1 2 3 33 33 H 1.00902 * 110.99633 * 208.95446 * 4 2 1 34 34 H 1.09000 * 109.47153 * 299.99736 * 5 4 2 35 35 H 1.08998 * 109.46939 * 59.99654 * 5 4 2 36 36 H 0.97006 * 120.00223 * 0.02562 * 8 6 5 37 37 H 0.97003 * 120.00408 * 179.97438 * 12 11 9 38 38 H 1.08996 * 109.50030 * 305.45639 * 19 17 2 39 39 H 1.08993 * 109.49731 * 65.55968 * 19 17 2 40 40 H 1.09003 * 109.45790 * 181.38239 * 20 19 17 41 41 H 1.08993 * 109.45845 * 301.36195 * 20 19 17 42 42 H 1.08998 * 109.50392 * 58.58480 * 21 20 19 43 43 H 1.09008 * 109.49166 * 178.64995 * 21 20 19 44 44 H 1.09000 * 109.74136 * 295.12144 * 22 21 20 45 45 H 1.08999 * 109.66155 * 174.55746 * 22 21 20 46 46 H 1.08998 * 109.47487 * 59.99657 * 26 24 23 47 47 H 1.09000 * 109.47062 * 299.99928 * 26 24 23 48 48 H 1.08998 * 115.56605 * 29.30920 * 27 26 24 49 49 H 1.08993 * 117.49691 * 359.97438 * 28 27 26 50 50 H 1.08999 * 117.49797 * 215.00354 * 28 27 26 51 51 H 1.08999 * 117.50019 * 107.47460 * 29 28 27 52 52 H 1.09001 * 117.49594 * 252.47833 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5886 -0.5216 -3.5557 7 8 2.8689 -1.6985 -3.4699 8 7 2.7288 0.1205 -4.7323 9 6 3.1897 -0.5562 -5.8319 10 1 3.4400 -1.6041 -5.7553 11 6 3.3347 0.1058 -7.0448 12 7 3.0306 1.3809 -7.1379 13 14 3.9634 -0.8162 -8.5429 14 1 2.8155 -1.4000 -9.2824 15 1 4.6977 0.1219 -9.4294 16 1 4.8765 -1.9034 -8.1078 17 6 2.0400 -0.7213 1.2493 18 1 3.1271 -0.7904 1.2131 19 6 1.4379 -2.1284 1.3152 20 6 1.8429 -2.7909 2.6341 21 6 1.2934 -1.9750 3.8064 22 6 1.8989 -0.5636 3.7689 23 7 1.6333 0.0238 2.4486 24 6 1.0332 1.2256 2.3398 25 8 0.9286 1.7550 1.2537 26 6 0.4924 1.9117 3.5677 27 6 -0.1340 3.2497 3.1702 28 6 -0.8464 4.0488 4.2633 29 6 0.5060 4.5236 3.7279 30 1 -0.3634 0.3692 0.9591 31 1 -0.3633 0.6460 -0.7993 32 1 -0.3634 -1.0151 -0.1599 33 1 2.9174 -1.1206 -1.0286 34 1 1.0872 0.6163 -2.5525 35 1 2.7589 1.0462 -2.1181 36 1 2.5043 1.0617 -4.8010 37 1 3.1322 1.8432 -7.9846 38 1 0.3513 -2.0622 1.2599 39 1 1.8096 -2.7226 0.4804 40 1 1.4361 -3.8014 2.6727 41 1 2.9299 -2.8341 2.6999 42 1 0.2082 -1.9102 3.7277 43 1 1.5618 -2.4604 4.7448 44 1 2.9748 -0.6200 3.9341 45 1 1.4403 0.0529 4.5421 46 1 1.3041 2.0856 4.2741 47 1 -0.2648 1.2804 4.0328 48 1 -0.5484 3.2943 2.1630 49 1 -0.8693 3.6210 5.2655 50 1 -1.7299 4.6187 3.9753 51 1 0.5123 5.4055 3.0875 52 1 1.3731 4.4086 4.3783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707431980.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:13 Heat of formation + Delta-G solvation = -23.235111 kcal Electronic energy + Delta-G solvation = -30389.569320 eV Core-core repulsion = 26390.629652 eV Total energy + Delta-G solvation = -3998.939668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.14519 -38.33512 -37.97555 -37.04627 -35.87772 -33.82124 -33.12187 -31.85915 -31.07902 -29.58712 -28.85151 -26.55940 -25.35412 -24.21488 -23.54597 -22.66708 -21.71157 -21.01555 -20.01332 -19.24032 -18.86666 -17.78934 -17.30380 -16.45348 -16.15663 -15.66531 -15.31225 -15.08385 -14.95536 -14.61713 -14.55472 -14.32225 -14.03799 -13.85228 -13.72822 -13.60145 -13.34153 -13.01918 -12.73518 -12.45884 -12.29080 -11.87379 -11.82244 -11.76418 -11.64782 -11.45489 -11.38239 -11.12257 -11.02825 -10.96636 -10.86153 -10.67432 -10.62053 -10.47361 -10.34046 -10.24848 -10.14134 -9.43234 -9.28553 -8.71585 -8.27479 -7.88486 -7.70312 -6.33768 -3.74358 2.47059 2.71044 3.23020 3.30733 3.36846 3.50802 4.02288 4.12553 4.23553 4.36125 4.45019 4.55841 4.60965 4.63255 4.63855 4.79323 4.88159 4.96318 5.06750 5.10180 5.19204 5.23890 5.26113 5.30349 5.33132 5.34391 5.37708 5.51238 5.60490 5.65903 5.70223 5.81555 5.84153 5.86730 5.95080 6.00166 6.04041 6.05646 6.10597 6.22537 6.28399 6.36306 6.39553 6.58184 6.68920 7.23464 7.48690 7.62351 7.86416 8.10469 8.15302 8.70720 9.26109 9.64194 10.16172 10.84224 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.002492 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.074866 B =11235.393197 C =12851.676590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.077 3.923 3 H 0.089 0.911 4 N -0.668 5.668 5 C 0.057 3.943 6 C 0.444 3.556 7 O -0.584 6.584 8 N -0.566 5.566 9 C -0.297 4.297 10 H 0.102 0.898 11 C 0.020 3.980 12 N -0.903 5.903 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.270 1.270 17 C 0.149 3.851 18 H 0.068 0.932 19 C -0.128 4.128 20 C -0.122 4.122 21 C -0.135 4.135 22 C 0.108 3.892 23 N -0.608 5.608 24 C 0.511 3.489 25 O -0.514 6.514 26 C -0.110 4.110 27 C -0.140 4.140 28 C -0.181 4.181 29 C -0.178 4.178 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.342 0.658 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.120 0.880 49 H 0.092 0.908 50 H 0.095 0.905 51 H 0.095 0.905 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.472 1.740 28.648 29.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.032 4.032 3 H 0.107 0.893 4 N -0.303 5.303 5 C -0.076 4.076 6 C 0.229 3.771 7 O -0.469 6.469 8 N -0.203 5.203 9 C -0.427 4.427 10 H 0.120 0.880 11 C -0.181 4.181 12 N -0.545 5.545 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.195 1.195 17 C 0.046 3.954 18 H 0.086 0.914 19 C -0.166 4.166 20 C -0.160 4.160 21 C -0.173 4.173 22 C -0.015 4.015 23 N -0.343 5.343 24 C 0.300 3.700 25 O -0.390 6.390 26 C -0.150 4.150 27 C -0.158 4.158 28 C -0.219 4.219 29 C -0.215 4.215 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.161 0.839 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.225 0.775 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.108 0.892 47 H 0.113 0.887 48 H 0.138 0.862 49 H 0.111 0.889 50 H 0.113 0.887 51 H 0.113 0.887 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.939 1.123 27.789 28.438 hybrid contribution 0.961 0.666 -0.515 1.278 sum -4.978 1.789 27.274 27.782 Atomic orbital electron populations 1.21878 0.94478 1.00296 1.00972 1.22265 0.96771 0.97343 0.86830 0.89326 1.60163 1.33961 1.32698 1.03434 1.21628 1.01176 0.93734 0.91016 1.19893 0.84545 0.88161 0.84474 1.90499 1.55326 1.16185 1.84859 1.41876 1.57948 1.12482 1.08007 1.19693 1.39710 0.96402 0.86875 0.87997 1.25256 0.97847 0.95775 0.99203 1.69623 1.48943 1.08842 1.27049 0.85866 0.78844 0.78912 0.80692 1.20442 1.20995 1.19480 1.21446 0.98112 0.91627 0.84253 0.91414 1.21981 1.01988 0.94917 0.97731 1.21563 1.00894 0.98990 0.94558 1.21999 1.01060 0.95098 0.99145 1.21840 1.00737 0.94781 0.84174 1.48116 1.60181 1.19017 1.07013 1.20464 0.77873 0.80800 0.90875 1.90752 1.56238 1.64494 1.27471 1.21289 1.01054 0.96092 0.96587 1.22095 1.03660 0.90559 0.99515 1.22990 0.96280 1.04160 0.98421 1.23035 0.96302 0.98473 1.03690 0.92858 0.93334 0.93464 0.83903 0.89748 0.94131 0.77461 0.91958 0.90928 0.89405 0.91592 0.91918 0.91414 0.90937 0.91249 0.89817 0.89167 0.88740 0.86207 0.88925 0.88688 0.88693 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 7.33 37.16 0.27 -1.49 16 2 C 0.08 1.14 1.86 -67.71 -0.13 1.01 16 3 H 0.09 1.49 5.39 -52.91 -0.29 1.20 16 4 N -0.67 -11.78 5.50 -107.98 -0.59 -12.38 16 5 C 0.06 1.13 5.97 -4.97 -0.03 1.10 16 6 C 0.44 11.09 7.82 -10.99 -0.09 11.00 16 7 O -0.58 -16.45 15.78 5.55 0.09 -16.36 16 8 N -0.57 -15.11 5.29 -10.97 -0.06 -15.17 16 9 C -0.30 -8.60 9.68 -14.94 -0.14 -8.74 16 10 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 11 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 12 N -0.90 -25.47 13.05 55.50 0.72 -24.75 16 13 Si 0.93 21.70 29.55 -169.99 -5.02 16.67 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 C 0.15 1.75 2.57 -67.60 -0.17 1.57 16 18 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 19 C -0.13 -1.39 4.89 -26.61 -0.13 -1.52 16 20 C -0.12 -0.98 5.88 -26.69 -0.16 -1.14 16 21 C -0.13 -0.83 6.10 -26.39 -0.16 -0.99 16 22 C 0.11 0.67 6.38 -3.48 -0.02 0.65 16 23 N -0.61 -5.82 2.91 -164.96 -0.48 -6.30 16 24 C 0.51 5.45 6.06 -10.99 -0.07 5.38 16 25 O -0.51 -7.28 9.56 5.56 0.05 -7.22 16 26 C -0.11 -0.81 4.34 -27.89 -0.12 -0.93 16 27 C -0.14 -1.19 5.42 -90.58 -0.49 -1.68 16 28 C -0.18 -1.22 10.25 -26.73 -0.27 -1.49 16 29 C -0.18 -1.35 10.18 -26.69 -0.27 -1.63 16 30 H 0.05 0.74 5.12 -51.93 -0.27 0.47 16 31 H 0.05 0.79 7.70 -51.93 -0.40 0.39 16 32 H 0.05 0.71 6.79 -51.93 -0.35 0.36 16 33 H 0.34 6.07 7.99 -39.29 -0.31 5.76 16 34 H 0.08 1.63 7.63 -51.93 -0.40 1.23 16 35 H 0.04 0.76 8.05 -51.93 -0.42 0.34 16 36 H 0.39 10.11 7.90 -40.82 -0.32 9.78 16 37 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.07 0.85 6.28 -51.93 -0.33 0.52 16 39 H 0.09 1.11 7.92 -51.93 -0.41 0.70 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.35 5.93 -51.93 -0.31 0.04 16 46 H 0.09 0.51 7.41 -51.93 -0.38 0.13 16 47 H 0.09 0.54 7.96 -51.93 -0.41 0.13 16 48 H 0.12 1.29 7.31 -51.93 -0.38 0.91 16 49 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.09 0.61 8.04 -51.93 -0.42 0.20 16 LS Contribution 399.23 15.07 6.02 6.02 Total: -1.00 -33.06 399.23 -10.06 -43.11 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -8.70 Total: 14.79 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.08 Total: 1.59 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.41 Total: -58.60 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.14 Total: -23.58 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.06 -10.06 -43.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707431980.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.876 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds