Wall clock time and date at job start Tue Mar 31 2020 20:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47195 * 2 1 4 4 N 1.46903 * 109.47198 * 239.99698 * 2 1 3 5 5 C 1.46905 * 110.99539 * 85.00268 * 4 2 1 6 6 C 1.50702 * 109.46641 * 179.97438 * 5 4 2 7 7 O 1.21284 * 120.00344 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99676 * 179.97438 * 6 5 4 9 9 C 1.37094 * 120.00242 * 179.97438 * 8 6 5 10 10 H 1.08006 * 119.99757 * 0.02562 * 9 8 6 11 11 C 1.38944 * 120.00579 * 180.02562 * 9 8 6 12 12 N 1.31416 * 119.99775 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00360 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46922 * 90.00535 * 13 11 9 15 15 H 1.48505 * 109.47345 * 210.00166 * 13 11 9 16 16 H 1.48498 * 109.47207 * 330.00346 * 13 11 9 17 17 C 1.53005 * 109.46785 * 120.00207 * 2 1 3 18 18 H 1.08997 * 109.58445 * 175.65019 * 17 2 1 19 19 C 1.53187 * 109.70380 * 55.29283 * 17 2 1 20 20 C 1.53049 * 109.30927 * 185.50821 * 19 17 2 21 21 C 1.53038 * 109.53470 * 61.36835 * 20 19 17 22 22 C 1.53628 * 109.24226 * 298.50669 * 21 20 19 23 23 N 1.46926 * 108.54230 * 54.86123 * 22 21 20 24 24 C 1.34776 * 120.62849 * 126.36679 * 23 22 21 25 25 O 1.21280 * 119.99542 * 173.30726 * 24 23 22 26 26 C 1.50695 * 120.00230 * 353.31117 * 24 23 22 27 27 C 1.52995 * 109.47201 * 180.02562 * 26 24 23 28 28 C 1.53005 * 117.50012 * 174.99941 * 27 26 24 29 29 C 1.53005 * 60.03311 * 107.49992 * 28 27 26 30 30 H 1.09002 * 109.47616 * 291.05298 * 1 2 3 31 31 H 1.09002 * 109.46880 * 51.05374 * 1 2 3 32 32 H 1.09001 * 109.47316 * 171.04689 * 1 2 3 33 33 H 1.00902 * 110.99633 * 208.95446 * 4 2 1 34 34 H 1.09000 * 109.47153 * 299.99736 * 5 4 2 35 35 H 1.08998 * 109.46939 * 59.99654 * 5 4 2 36 36 H 0.97006 * 120.00223 * 0.02562 * 8 6 5 37 37 H 0.97003 * 120.00408 * 179.97438 * 12 11 9 38 38 H 1.08996 * 109.50030 * 305.45639 * 19 17 2 39 39 H 1.08993 * 109.49731 * 65.55968 * 19 17 2 40 40 H 1.09003 * 109.45790 * 181.38239 * 20 19 17 41 41 H 1.08993 * 109.45845 * 301.36195 * 20 19 17 42 42 H 1.08998 * 109.50392 * 58.58480 * 21 20 19 43 43 H 1.09008 * 109.49166 * 178.64995 * 21 20 19 44 44 H 1.09000 * 109.74136 * 295.12144 * 22 21 20 45 45 H 1.08999 * 109.66155 * 174.55746 * 22 21 20 46 46 H 1.08998 * 109.47487 * 59.99657 * 26 24 23 47 47 H 1.09000 * 109.47062 * 299.99928 * 26 24 23 48 48 H 1.08998 * 115.56605 * 29.30920 * 27 26 24 49 49 H 1.08993 * 117.49691 * 359.97438 * 28 27 26 50 50 H 1.08999 * 117.49797 * 215.00354 * 28 27 26 51 51 H 1.08999 * 117.50019 * 107.47460 * 29 28 27 52 52 H 1.09001 * 117.49594 * 252.47833 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0825 0.2226 -2.3469 6 6 2.5886 -0.5216 -3.5557 7 8 2.8689 -1.6985 -3.4699 8 7 2.7288 0.1205 -4.7323 9 6 3.1897 -0.5562 -5.8319 10 1 3.4400 -1.6041 -5.7553 11 6 3.3347 0.1058 -7.0448 12 7 3.0306 1.3809 -7.1379 13 14 3.9634 -0.8162 -8.5429 14 1 2.8155 -1.4000 -9.2824 15 1 4.6977 0.1219 -9.4294 16 1 4.8765 -1.9034 -8.1078 17 6 2.0400 -0.7213 1.2493 18 1 3.1271 -0.7904 1.2131 19 6 1.4379 -2.1284 1.3152 20 6 1.8429 -2.7909 2.6341 21 6 1.2934 -1.9750 3.8064 22 6 1.8989 -0.5636 3.7689 23 7 1.6333 0.0238 2.4486 24 6 1.0332 1.2256 2.3398 25 8 0.9286 1.7550 1.2537 26 6 0.4924 1.9117 3.5677 27 6 -0.1340 3.2497 3.1702 28 6 -0.8464 4.0488 4.2633 29 6 0.5060 4.5236 3.7279 30 1 -0.3634 0.3692 0.9591 31 1 -0.3633 0.6460 -0.7993 32 1 -0.3634 -1.0151 -0.1599 33 1 2.9174 -1.1206 -1.0286 34 1 1.0872 0.6163 -2.5525 35 1 2.7589 1.0462 -2.1181 36 1 2.5043 1.0617 -4.8010 37 1 3.1322 1.8432 -7.9846 38 1 0.3513 -2.0622 1.2599 39 1 1.8096 -2.7226 0.4804 40 1 1.4361 -3.8014 2.6727 41 1 2.9299 -2.8341 2.6999 42 1 0.2082 -1.9102 3.7277 43 1 1.5618 -2.4604 4.7448 44 1 2.9748 -0.6200 3.9341 45 1 1.4403 0.0529 4.5421 46 1 1.3041 2.0856 4.2741 47 1 -0.2648 1.2804 4.0328 48 1 -0.5484 3.2943 2.1630 49 1 -0.8693 3.6210 5.2655 50 1 -1.7299 4.6187 3.9753 51 1 0.5123 5.4055 3.0875 52 1 1.3731 4.4086 4.3783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707431980.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:12 Heat of formation + Delta-G solvation = -45.354978 kcal Electronic energy + Delta-G solvation = -30390.528509 eV Core-core repulsion = 26390.629652 eV Total energy + Delta-G solvation = -3999.898857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.00777 -40.16542 -38.88016 -37.74805 -37.14714 -35.92449 -33.90275 -33.35899 -32.86376 -30.21985 -29.96127 -28.22494 -26.54656 -25.57436 -24.62720 -23.20106 -22.46939 -21.87199 -21.12448 -20.84592 -19.97441 -19.69272 -18.38586 -17.49972 -17.21535 -16.97949 -16.67040 -16.39826 -16.17681 -15.87294 -15.63680 -15.39860 -15.19002 -15.05589 -14.75087 -14.49268 -14.33835 -14.15315 -13.99134 -13.64601 -13.50932 -13.32025 -13.23635 -12.95134 -12.86795 -12.45699 -12.41596 -12.35893 -12.26313 -12.12730 -12.03039 -11.81386 -11.75320 -11.55201 -11.52246 -11.37222 -11.19130 -10.84219 -10.41851 -10.22418 -10.04081 -9.52938 -9.09878 -8.48099 -5.97744 1.36898 1.39879 1.53686 1.68648 1.94748 2.01581 2.28257 2.90462 2.97685 3.18343 3.47853 3.55409 3.78082 3.81777 3.90997 3.95343 4.07774 4.10147 4.20529 4.24615 4.25693 4.31235 4.40969 4.48958 4.52733 4.58285 4.63531 4.69970 4.71659 4.75532 4.82899 4.84209 4.91785 4.95659 5.01421 5.06880 5.11278 5.15392 5.27255 5.27316 5.29522 5.36123 5.38704 5.40571 5.52044 5.65639 5.90878 6.11434 6.43137 6.52217 6.57262 7.09531 7.29855 7.52509 8.07240 8.69680 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.002492 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.074866 B =11235.393197 C =12851.676590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.083 3.917 3 H 0.074 0.926 4 N -0.674 5.674 5 C 0.073 3.927 6 C 0.442 3.558 7 O -0.618 6.618 8 N -0.574 5.574 9 C -0.334 4.334 10 H 0.081 0.919 11 C -0.016 4.016 12 N -0.923 5.923 13 Si 0.997 3.003 14 H -0.270 1.270 15 H -0.269 1.269 16 H -0.271 1.271 17 C 0.153 3.847 18 H 0.067 0.933 19 C -0.122 4.122 20 C -0.120 4.120 21 C -0.129 4.129 22 C 0.102 3.898 23 N -0.606 5.606 24 C 0.502 3.498 25 O -0.558 6.558 26 C -0.099 4.099 27 C -0.158 4.158 28 C -0.164 4.164 29 C -0.185 4.185 30 H 0.065 0.935 31 H 0.027 0.973 32 H 0.040 0.960 33 H 0.340 0.660 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.395 0.605 37 H 0.278 0.722 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.118 0.882 48 H 0.087 0.913 49 H 0.115 0.885 50 H 0.093 0.907 51 H 0.083 0.917 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 1.619 31.288 31.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.025 4.025 3 H 0.091 0.909 4 N -0.308 5.308 5 C -0.059 4.059 6 C 0.229 3.771 7 O -0.505 6.505 8 N -0.211 5.211 9 C -0.463 4.463 10 H 0.099 0.901 11 C -0.215 4.215 12 N -0.564 5.564 13 Si 0.820 3.180 14 H -0.196 1.196 15 H -0.194 1.194 16 H -0.196 1.196 17 C 0.049 3.951 18 H 0.085 0.915 19 C -0.161 4.161 20 C -0.158 4.158 21 C -0.167 4.167 22 C -0.019 4.019 23 N -0.339 5.339 24 C 0.292 3.708 25 O -0.438 6.438 26 C -0.138 4.138 27 C -0.177 4.177 28 C -0.201 4.201 29 C -0.222 4.222 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.159 0.841 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.228 0.772 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.117 0.883 44 H 0.098 0.902 45 H 0.132 0.868 46 H 0.134 0.866 47 H 0.136 0.864 48 H 0.106 0.894 49 H 0.133 0.867 50 H 0.112 0.888 51 H 0.102 0.898 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.861 1.014 30.477 31.052 hybrid contribution 0.911 0.736 -1.314 1.760 sum -4.950 1.749 29.163 29.632 Atomic orbital electron populations 1.21775 0.94543 0.99282 1.00820 1.22214 0.96516 0.96614 0.87186 0.90885 1.60157 1.33893 1.32727 1.04072 1.21426 1.01285 0.93607 0.89631 1.20725 0.83202 0.87946 0.85236 1.90464 1.56584 1.17874 1.85560 1.41952 1.58283 1.12560 1.08299 1.19701 1.42107 0.96025 0.88507 0.90118 1.26125 0.97211 0.96649 1.01533 1.69695 1.48654 1.09836 1.28177 0.84873 0.78437 0.77789 0.76881 1.19575 1.19416 1.19553 1.21226 0.97928 0.91959 0.84017 0.91541 1.21879 1.01052 0.94260 0.98880 1.21552 1.01268 0.99314 0.93617 1.21980 1.00772 0.94744 0.99198 1.22170 1.01834 0.95173 0.82772 1.48215 1.59513 1.18649 1.07564 1.21172 0.77286 0.80787 0.91509 1.90738 1.57961 1.65639 1.29422 1.21291 1.02207 0.95180 0.95126 1.22018 1.05061 0.91822 0.98778 1.23069 0.95595 1.02772 0.98671 1.23112 0.97577 0.97651 1.03867 0.91673 0.95411 0.94079 0.84105 0.89232 0.92795 0.77178 0.91259 0.91935 0.91864 0.91160 0.91540 0.91631 0.88278 0.90218 0.86800 0.86561 0.86393 0.89448 0.86668 0.88804 0.89808 0.87597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.29 7.33 71.98 0.53 -2.76 16 2 C 0.08 2.54 1.86 44.92 0.08 2.62 16 3 H 0.07 2.55 5.39 -17.87 -0.10 2.45 16 4 N -0.67 -24.68 5.50 -495.55 -2.72 -27.41 16 5 C 0.07 3.00 5.97 85.56 0.51 3.51 16 6 C 0.44 22.88 7.82 87.66 0.69 23.56 16 7 O -0.62 -36.12 15.78 -3.04 -0.05 -36.17 16 8 N -0.57 -31.67 5.29 -307.00 -1.62 -33.29 16 9 C -0.33 -19.87 9.68 84.04 0.81 -19.05 16 10 H 0.08 5.06 7.16 -2.91 -0.02 5.04 16 11 C -0.02 -0.88 5.50 84.92 0.47 -0.41 16 12 N -0.92 -52.10 13.05 21.66 0.28 -51.82 16 13 Si 1.00 44.43 29.55 68.60 2.03 46.45 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 C 0.15 3.55 2.57 44.97 0.12 3.67 16 18 H 0.07 1.57 8.04 -2.39 -0.02 1.55 16 19 C -0.12 -2.64 4.89 30.67 0.15 -2.49 16 20 C -0.12 -1.70 5.88 30.62 0.18 -1.52 16 21 C -0.13 -1.13 6.10 30.82 0.19 -0.95 16 22 C 0.10 0.90 6.38 86.51 0.55 1.45 16 23 N -0.61 -10.55 2.91 -794.19 -2.31 -12.86 16 24 C 0.50 10.11 6.06 87.66 0.53 10.64 16 25 O -0.56 -16.15 9.56 -3.03 -0.03 -16.18 16 26 C -0.10 -1.17 4.34 29.84 0.13 -1.04 16 27 C -0.16 -2.52 5.42 -10.77 -0.06 -2.58 16 28 C -0.16 -1.84 10.25 30.60 0.31 -1.52 16 29 C -0.19 -2.56 10.18 30.62 0.31 -2.25 16 30 H 0.06 1.84 5.12 -2.39 -0.01 1.83 16 31 H 0.03 0.93 7.70 -2.39 -0.02 0.92 16 32 H 0.04 1.28 6.79 -2.39 -0.02 1.27 16 33 H 0.34 12.58 7.99 -89.69 -0.72 11.86 16 34 H 0.09 3.58 7.63 -2.39 -0.02 3.56 16 35 H 0.05 2.07 8.05 -2.39 -0.02 2.05 16 36 H 0.39 20.99 7.90 -92.70 -0.73 20.26 16 37 H 0.28 14.62 8.31 -92.71 -0.77 13.85 16 38 H 0.06 1.46 6.28 -2.39 -0.01 1.44 16 39 H 0.06 1.66 7.92 -2.39 -0.02 1.64 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 44 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.11 0.36 5.93 -2.39 -0.01 0.35 16 46 H 0.12 0.81 7.41 -2.39 -0.02 0.79 16 47 H 0.12 0.87 7.96 -2.39 -0.02 0.85 16 48 H 0.09 1.98 7.31 -2.39 -0.02 1.96 16 49 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.11 1.15 8.04 -2.39 -0.02 1.13 16 Total: -1.00 -74.41 399.23 0.48 -73.93 By element: Atomic # 1 Polarization: 47.06 SS G_CDS: -0.60 Total: 46.47 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 5.50 Total: 10.87 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -6.37 Total: -125.38 kcal Atomic # 8 Polarization: -52.27 SS G_CDS: -0.08 Total: -52.35 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -74.41 0.48 -73.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707431980.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.574 kcal (2) G-P(sol) polarization free energy of solvation -74.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds