Wall clock time and date at job start Tue Mar 31 2020 20:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47127 * 2 1 4 4 C 1.53000 * 109.47113 * 119.99804 * 2 1 3 5 5 N 1.46899 * 109.47265 * 295.00277 * 4 2 1 6 6 C 1.46898 * 111.00042 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47145 * 179.97438 * 6 5 4 8 8 O 1.21295 * 119.99859 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99936 * 179.97438 * 7 6 5 10 10 C 1.37104 * 119.99826 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99768 * 359.97438 * 10 9 7 12 12 C 1.38947 * 119.99842 * 180.02562 * 10 9 7 13 13 N 1.31414 * 119.99938 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99880 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46686 * 60.00125 * 14 12 10 16 16 H 1.48498 * 109.46981 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47192 * 300.00387 * 14 12 10 18 18 C 1.52998 * 109.47369 * 239.99986 * 2 1 3 19 19 N 1.46503 * 109.47308 * 65.00155 * 18 2 1 20 20 C 1.34775 * 120.00032 * 180.02562 * 19 18 2 21 21 O 1.21283 * 119.99992 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99647 * 179.97438 * 20 19 18 23 23 C 1.52996 * 109.64024 * 300.41932 * 22 20 19 24 24 C 1.53175 * 109.75830 * 61.15493 * 22 20 19 25 25 C 1.50070 * 110.06164 * 169.44512 * 24 22 20 26 26 C 1.29452 * 124.07339 * 342.43433 * 25 24 22 27 27 C 1.50060 * 124.07388 * 0.72572 * 26 25 24 28 28 C 1.53020 * 110.15249 * 342.87128 * 27 26 25 29 29 H 1.08994 * 109.47241 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47348 * 300.00419 * 1 2 3 31 31 H 1.09006 * 109.46959 * 59.99884 * 1 2 3 32 32 H 1.09004 * 109.46823 * 55.00334 * 4 2 1 33 33 H 1.08997 * 109.47246 * 174.99791 * 4 2 1 34 34 H 1.00900 * 110.99642 * 303.94852 * 5 4 2 35 35 H 1.08992 * 109.47453 * 300.00197 * 6 5 4 36 36 H 1.09003 * 109.46983 * 60.00349 * 6 5 4 37 37 H 0.96993 * 120.00161 * 0.02562 * 9 7 6 38 38 H 0.96997 * 119.99490 * 180.02562 * 13 12 10 39 39 H 1.09003 * 109.46911 * 305.00004 * 18 2 1 40 40 H 1.08998 * 109.47625 * 185.00151 * 18 2 1 41 41 H 0.96998 * 119.99487 * 359.97438 * 19 18 2 42 42 H 1.08997 * 109.47359 * 299.58141 * 23 22 20 43 43 H 1.09002 * 109.47243 * 59.58338 * 23 22 20 44 44 H 1.09001 * 109.47407 * 179.58071 * 23 22 20 45 45 H 1.09008 * 109.54198 * 49.17669 * 24 22 20 46 46 H 1.08999 * 109.26088 * 289.53604 * 24 22 20 47 47 H 1.08002 * 117.96604 * 162.72071 * 25 24 22 48 48 H 1.07994 * 117.95989 * 180.70886 * 26 25 24 49 49 H 1.09006 * 109.35518 * 103.07868 * 27 26 25 50 50 H 1.09004 * 109.36035 * 222.65984 * 27 26 25 51 51 H 1.09004 * 109.64792 * 169.11546 * 28 27 26 52 52 H 1.09002 * 109.64426 * 289.54189 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6513 0.0374 2.4456 6 6 2.1246 -0.6271 3.6672 7 6 1.7086 0.1787 4.8708 8 8 1.0793 1.2053 4.7253 9 7 2.0350 -0.2420 6.1090 10 6 1.6561 0.4909 7.2041 11 1 1.0964 1.4054 7.0744 12 6 1.9930 0.0575 8.4805 13 7 2.6753 -1.0546 8.6380 14 14 1.4774 1.0563 9.9724 15 1 -0.0034 1.1629 10.0089 16 1 1.9564 0.3848 11.2073 17 1 2.0695 2.4154 9.8870 18 6 2.0400 -0.7212 -1.2492 19 7 1.6525 0.0354 -2.4424 20 6 1.9957 -0.4136 -3.6659 21 8 2.6257 -1.4438 -3.7792 22 6 1.5966 0.3644 -4.8933 23 6 0.0725 0.4855 -4.9524 24 6 2.2275 1.7595 -4.8499 25 6 2.0521 2.4452 -6.1732 26 6 1.7565 1.8320 -7.2743 27 6 1.5326 0.3519 -7.3783 28 6 2.1057 -0.3557 -6.1484 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -1.7198 1.2951 33 1 3.1262 -0.7995 1.2056 34 1 1.9881 0.9873 2.3967 35 1 1.6903 -1.6248 3.7297 36 1 3.2116 -0.7049 3.6406 37 1 2.5380 -1.0631 6.2254 38 1 2.9102 -1.3572 9.5292 39 1 1.6054 -1.7198 -1.2951 40 1 3.1263 -0.7995 -1.2056 41 1 1.1483 0.8590 -2.3518 42 1 -0.3693 -0.5096 -5.0028 43 1 -0.2862 0.9975 -4.0595 44 1 -0.2128 1.0549 -5.8369 45 1 3.2909 1.6720 -4.6266 46 1 1.7440 2.3488 -4.0708 47 1 2.1851 3.5164 -6.2102 48 1 1.6650 2.4225 -8.1739 49 1 0.4631 0.1520 -7.4444 50 1 2.0247 -0.0260 -8.2745 51 1 1.7739 -1.3939 -6.1351 52 1 3.1946 -0.3194 -6.1791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715224621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:47 Heat of formation + Delta-G solvation = -81.384556 kcal Electronic energy + Delta-G solvation = -28590.068606 eV Core-core repulsion = 24588.607389 eV Total energy + Delta-G solvation = -4001.461217 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.94847 -38.63571 -38.25495 -37.10723 -34.92894 -33.88108 -33.04471 -32.02252 -31.22493 -31.10200 -27.60206 -27.41711 -26.82198 -24.93642 -23.98860 -23.33546 -22.35097 -20.79270 -20.07007 -19.17879 -17.95400 -17.76755 -17.47646 -16.56038 -15.97415 -15.88521 -15.72216 -15.35541 -14.90436 -14.75902 -14.60470 -14.38942 -14.32385 -13.79262 -13.71112 -13.50641 -13.42328 -13.29794 -12.99115 -12.65694 -12.55887 -12.39535 -12.34467 -12.09143 -11.92043 -11.67881 -11.51984 -11.34313 -11.17358 -11.13674 -11.01775 -10.97748 -10.87827 -10.69886 -10.44495 -10.21585 -9.87034 -9.50172 -9.43834 -9.29511 -8.46625 -8.05964 -7.95970 -6.41712 -3.82723 1.85354 2.39074 2.88242 3.19984 3.25735 3.30063 3.90846 4.06402 4.09683 4.15270 4.30469 4.36689 4.63138 4.68671 4.71010 4.82420 4.83035 4.89341 4.94289 5.04920 5.12842 5.16868 5.20295 5.25799 5.33566 5.37814 5.40596 5.46796 5.50452 5.52460 5.60369 5.67065 5.68424 5.75565 5.82205 5.86857 5.88614 5.90096 5.98519 6.08625 6.21106 6.23792 6.26803 6.38711 6.50148 7.19376 7.23016 7.54799 7.64488 7.97012 8.05970 8.61156 9.17579 9.54241 10.05640 10.75917 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.035104 B = 0.001500 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.429938 B =18668.063372 C =19000.824203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.076 0.924 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.301 4.301 11 H 0.102 0.898 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.123 3.877 19 N -0.724 5.724 20 C 0.522 3.478 21 O -0.539 6.539 22 C -0.078 4.078 23 C -0.142 4.142 24 C -0.079 4.079 25 C -0.152 4.152 26 C -0.154 4.154 27 C -0.094 4.094 28 C -0.095 4.095 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.029 0.971 34 H 0.348 0.652 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.400 0.600 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.106 0.894 48 H 0.103 0.897 49 H 0.077 0.923 50 H 0.074 0.926 51 H 0.074 0.926 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.297 2.220 -30.627 30.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.094 0.906 4 C -0.064 4.064 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.001 4.001 19 N -0.376 5.376 20 C 0.308 3.692 21 O -0.416 6.416 22 C -0.081 4.081 23 C -0.199 4.199 24 C -0.116 4.116 25 C -0.170 4.170 26 C -0.172 4.172 27 C -0.131 4.131 28 C -0.133 4.133 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.167 0.833 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.226 0.774 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.235 0.765 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.124 0.876 48 H 0.121 0.879 49 H 0.095 0.905 50 H 0.092 0.908 51 H 0.093 0.907 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.817 1.782 -30.557 30.663 hybrid contribution 0.881 0.549 0.952 1.408 sum -0.936 2.331 -29.606 29.712 Atomic orbital electron populations 1.21755 0.93734 1.02171 1.02047 1.21338 0.97615 0.99927 0.92980 0.90556 1.21896 0.97335 0.97976 0.89227 1.60034 1.64165 1.05821 0.99787 1.21664 0.97753 0.98655 0.90113 1.19810 0.85559 0.87933 0.84087 1.90517 1.44143 1.26441 1.85749 1.41860 1.49497 1.24209 1.04435 1.19660 1.33017 1.06726 0.83643 0.87974 1.25262 0.96883 0.96646 0.99105 1.69606 1.38790 1.21729 1.24164 0.85912 0.79056 0.79371 0.79839 1.19881 1.20975 1.19940 1.21406 0.99996 0.95481 0.83200 1.46031 1.57897 1.27896 1.05808 1.20511 0.78884 0.85412 0.84398 1.90703 1.39728 1.24480 1.86685 1.20877 0.97646 0.95856 0.93747 1.21912 0.92255 1.02693 1.03077 1.20514 1.01300 0.93231 0.96544 1.21952 1.01322 0.99631 0.94113 1.22077 1.00922 0.96367 0.97878 1.20543 1.01518 0.92617 0.98374 1.21447 1.01085 0.99165 0.91572 0.92786 0.90409 0.93765 0.90742 0.95293 0.83259 0.89588 0.93894 0.77449 0.91818 0.91225 0.91517 0.76462 0.91961 0.92123 0.90765 0.90289 0.90442 0.87556 0.87857 0.90471 0.90770 0.90686 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.95 37.15 0.33 -1.04 16 2 C -0.10 -0.94 2.57 -90.62 -0.23 -1.17 16 3 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.07 0.76 5.07 -3.82 -0.02 0.74 16 5 N -0.67 -10.22 5.58 -115.06 -0.64 -10.86 16 6 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 7 C 0.44 10.34 7.82 -10.98 -0.09 10.25 16 8 O -0.58 -15.71 15.78 5.54 0.09 -15.63 16 9 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 10 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 11 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 14 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 C 0.12 1.15 5.06 -4.04 -0.02 1.13 16 19 N -0.72 -5.98 5.10 -60.29 -0.31 -6.29 16 20 C 0.52 5.18 6.48 -10.99 -0.07 5.11 16 21 O -0.54 -7.51 15.90 5.56 0.09 -7.42 16 22 C -0.08 -0.56 0.63 -155.36 -0.10 -0.66 16 23 C -0.14 -0.83 7.72 37.16 0.29 -0.54 16 24 C -0.08 -0.49 4.76 -28.10 -0.13 -0.62 16 25 C -0.15 -0.88 9.40 -35.90 -0.34 -1.21 16 26 C -0.15 -0.87 9.15 -35.91 -0.33 -1.19 16 27 C -0.09 -0.53 5.48 -28.18 -0.15 -0.68 16 28 C -0.09 -0.72 4.32 -26.51 -0.11 -0.84 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.95 7.75 -51.93 -0.40 0.55 16 31 H 0.04 0.35 7.18 -51.93 -0.37 -0.02 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.35 5.51 8.43 -39.29 -0.33 5.18 16 35 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 38 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.40 2.50 6.81 -40.82 -0.28 2.22 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.30 7.54 -51.93 -0.39 -0.09 16 44 H 0.07 0.39 5.71 -51.93 -0.30 0.09 16 45 H 0.08 0.55 8.11 -51.92 -0.42 0.13 16 46 H 0.08 0.38 7.94 -51.93 -0.41 -0.03 16 47 H 0.11 0.51 8.06 -52.49 -0.42 0.09 16 48 H 0.10 0.47 8.06 -52.49 -0.42 0.05 16 49 H 0.08 0.38 6.93 -51.93 -0.36 0.02 16 50 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.07 0.64 7.90 -51.93 -0.41 0.23 16 52 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 LS Contribution 413.65 15.07 6.23 6.23 Total: -1.00 -32.70 413.65 -9.15 -41.85 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -9.00 Total: 12.17 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.25 Total: 2.08 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.28 Total: -55.29 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.18 Total: -23.05 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.70 -9.15 -41.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715224621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.539 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds