Wall clock time and date at job start Tue Mar 31 2020 20:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47127 * 2 1 4 4 C 1.53000 * 109.47113 * 119.99804 * 2 1 3 5 5 N 1.46899 * 109.47265 * 295.00277 * 4 2 1 6 6 C 1.46898 * 111.00042 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47145 * 179.97438 * 6 5 4 8 8 O 1.21295 * 119.99859 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99936 * 179.97438 * 7 6 5 10 10 C 1.37104 * 119.99826 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99768 * 359.97438 * 10 9 7 12 12 C 1.38947 * 119.99842 * 180.02562 * 10 9 7 13 13 N 1.31414 * 119.99938 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99880 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46686 * 60.00125 * 14 12 10 16 16 H 1.48498 * 109.46981 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47192 * 300.00387 * 14 12 10 18 18 C 1.52998 * 109.47369 * 239.99986 * 2 1 3 19 19 N 1.46503 * 109.47308 * 65.00155 * 18 2 1 20 20 C 1.34775 * 120.00032 * 180.02562 * 19 18 2 21 21 O 1.21283 * 119.99992 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99647 * 179.97438 * 20 19 18 23 23 C 1.52996 * 109.64024 * 300.41932 * 22 20 19 24 24 C 1.53175 * 109.75830 * 61.15493 * 22 20 19 25 25 C 1.50070 * 110.06164 * 169.44512 * 24 22 20 26 26 C 1.29452 * 124.07339 * 342.43433 * 25 24 22 27 27 C 1.50060 * 124.07388 * 0.72572 * 26 25 24 28 28 C 1.53020 * 110.15249 * 342.87128 * 27 26 25 29 29 H 1.08994 * 109.47241 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47348 * 300.00419 * 1 2 3 31 31 H 1.09006 * 109.46959 * 59.99884 * 1 2 3 32 32 H 1.09004 * 109.46823 * 55.00334 * 4 2 1 33 33 H 1.08997 * 109.47246 * 174.99791 * 4 2 1 34 34 H 1.00900 * 110.99642 * 303.94852 * 5 4 2 35 35 H 1.08992 * 109.47453 * 300.00197 * 6 5 4 36 36 H 1.09003 * 109.46983 * 60.00349 * 6 5 4 37 37 H 0.96993 * 120.00161 * 0.02562 * 9 7 6 38 38 H 0.96997 * 119.99490 * 180.02562 * 13 12 10 39 39 H 1.09003 * 109.46911 * 305.00004 * 18 2 1 40 40 H 1.08998 * 109.47625 * 185.00151 * 18 2 1 41 41 H 0.96998 * 119.99487 * 359.97438 * 19 18 2 42 42 H 1.08997 * 109.47359 * 299.58141 * 23 22 20 43 43 H 1.09002 * 109.47243 * 59.58338 * 23 22 20 44 44 H 1.09001 * 109.47407 * 179.58071 * 23 22 20 45 45 H 1.09008 * 109.54198 * 49.17669 * 24 22 20 46 46 H 1.08999 * 109.26088 * 289.53604 * 24 22 20 47 47 H 1.08002 * 117.96604 * 162.72071 * 25 24 22 48 48 H 1.07994 * 117.95989 * 180.70886 * 26 25 24 49 49 H 1.09006 * 109.35518 * 103.07868 * 27 26 25 50 50 H 1.09004 * 109.36035 * 222.65984 * 27 26 25 51 51 H 1.09004 * 109.64792 * 169.11546 * 28 27 26 52 52 H 1.09002 * 109.64426 * 289.54189 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6513 0.0374 2.4456 6 6 2.1246 -0.6271 3.6672 7 6 1.7086 0.1787 4.8708 8 8 1.0793 1.2053 4.7253 9 7 2.0350 -0.2420 6.1090 10 6 1.6561 0.4909 7.2041 11 1 1.0964 1.4054 7.0744 12 6 1.9930 0.0575 8.4805 13 7 2.6753 -1.0546 8.6380 14 14 1.4774 1.0563 9.9724 15 1 -0.0034 1.1629 10.0089 16 1 1.9564 0.3848 11.2073 17 1 2.0695 2.4154 9.8870 18 6 2.0400 -0.7212 -1.2492 19 7 1.6525 0.0354 -2.4424 20 6 1.9957 -0.4136 -3.6659 21 8 2.6257 -1.4438 -3.7792 22 6 1.5966 0.3644 -4.8933 23 6 0.0725 0.4855 -4.9524 24 6 2.2275 1.7595 -4.8499 25 6 2.0521 2.4452 -6.1732 26 6 1.7565 1.8320 -7.2743 27 6 1.5326 0.3519 -7.3783 28 6 2.1057 -0.3557 -6.1484 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -1.7198 1.2951 33 1 3.1262 -0.7995 1.2056 34 1 1.9881 0.9873 2.3967 35 1 1.6903 -1.6248 3.7297 36 1 3.2116 -0.7049 3.6406 37 1 2.5380 -1.0631 6.2254 38 1 2.9102 -1.3572 9.5292 39 1 1.6054 -1.7198 -1.2951 40 1 3.1263 -0.7995 -1.2056 41 1 1.1483 0.8590 -2.3518 42 1 -0.3693 -0.5096 -5.0028 43 1 -0.2862 0.9975 -4.0595 44 1 -0.2128 1.0549 -5.8369 45 1 3.2909 1.6720 -4.6266 46 1 1.7440 2.3488 -4.0708 47 1 2.1851 3.5164 -6.2102 48 1 1.6650 2.4225 -8.1739 49 1 0.4631 0.1520 -7.4444 50 1 2.0247 -0.0260 -8.2745 51 1 1.7739 -1.3939 -6.1351 52 1 3.1946 -0.3194 -6.1791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715224621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:46 Heat of formation + Delta-G solvation = -104.025622 kcal Electronic energy + Delta-G solvation = -28591.050396 eV Core-core repulsion = 24588.607389 eV Total energy + Delta-G solvation = -4002.443008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.63313 -40.17370 -39.18647 -38.12855 -36.19468 -35.66390 -33.83176 -33.25315 -32.72369 -31.66125 -28.82786 -28.09023 -27.65120 -26.55830 -24.82339 -24.28025 -23.10252 -21.66235 -21.10706 -20.65165 -19.88278 -18.47936 -17.98654 -17.82872 -17.18248 -16.97970 -16.55666 -16.41111 -16.30813 -15.94646 -15.52133 -15.43888 -15.25789 -15.10904 -14.87111 -14.48685 -14.24927 -14.00441 -13.87139 -13.79539 -13.49310 -13.38226 -13.15248 -13.12964 -13.00460 -12.83130 -12.81179 -12.60308 -12.42918 -12.12640 -12.01562 -11.96966 -11.89298 -11.71650 -11.60977 -11.49391 -11.22761 -10.64246 -10.33614 -10.09298 -10.01282 -9.85760 -9.29852 -8.46112 -5.95146 1.40451 1.42303 1.43624 1.53322 1.61754 2.05908 2.14110 2.30314 2.95383 3.21227 3.50672 3.53982 3.61824 3.81743 3.87025 3.95994 4.06629 4.15462 4.21799 4.33170 4.36558 4.41134 4.48151 4.49833 4.55473 4.58450 4.63137 4.68923 4.71947 4.76475 4.83807 4.91308 4.92724 4.97218 5.04613 5.07063 5.09869 5.18239 5.25959 5.29373 5.39261 5.41017 5.45163 5.54202 5.79902 5.88721 6.08059 6.10124 6.42116 6.53496 6.60405 7.12745 7.22883 7.56715 8.11720 8.70989 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.035104 B = 0.001500 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.429938 B =18668.063372 C =19000.824203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.084 0.916 4 C 0.066 3.934 5 N -0.676 5.676 6 C 0.065 3.935 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.336 4.336 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.994 3.006 15 H -0.272 1.272 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.130 3.870 19 N -0.713 5.713 20 C 0.519 3.481 21 O -0.585 6.585 22 C -0.073 4.073 23 C -0.139 4.139 24 C -0.078 4.078 25 C -0.158 4.158 26 C -0.157 4.157 27 C -0.091 4.091 28 C -0.096 4.096 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.040 0.960 34 H 0.345 0.655 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.413 0.587 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.093 0.907 47 H 0.119 0.881 48 H 0.117 0.883 49 H 0.087 0.913 50 H 0.080 0.920 51 H 0.059 0.941 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.687 2.994 -31.501 31.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.102 0.898 4 C -0.063 4.063 5 N -0.308 5.308 6 C -0.068 4.068 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.211 5.211 10 C -0.466 4.466 11 H 0.098 0.902 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.817 3.183 15 H -0.197 1.197 16 H -0.195 1.195 17 H -0.196 1.196 18 C 0.006 3.994 19 N -0.365 5.365 20 C 0.307 3.693 21 O -0.465 6.465 22 C -0.076 4.076 23 C -0.196 4.196 24 C -0.115 4.115 25 C -0.176 4.176 26 C -0.175 4.175 27 C -0.127 4.127 28 C -0.134 4.134 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.163 0.837 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.250 0.750 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.086 0.914 46 H 0.112 0.888 47 H 0.136 0.864 48 H 0.135 0.865 49 H 0.105 0.895 50 H 0.099 0.901 51 H 0.078 0.922 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.212 2.559 -31.442 31.624 hybrid contribution 1.012 0.281 1.163 1.567 sum -1.200 2.840 -30.280 30.436 Atomic orbital electron populations 1.21701 0.93811 1.01896 1.01902 1.21196 0.97321 1.00051 0.91983 0.89752 1.21968 0.98133 0.97826 0.88375 1.60029 1.64650 1.05931 1.00223 1.21521 0.99055 0.98044 0.88164 1.20875 0.83889 0.87633 0.85059 1.90484 1.45540 1.28327 1.86502 1.41939 1.50056 1.24325 1.04774 1.19654 1.34561 1.07024 0.85328 0.90221 1.26046 0.96400 0.97571 1.01226 1.69670 1.38880 1.22486 1.25090 0.84980 0.78621 0.78022 0.76661 1.19717 1.19543 1.19649 1.21245 0.99524 0.95218 0.83418 1.45933 1.57366 1.28048 1.05134 1.21028 0.77996 0.84928 0.85381 1.90682 1.41878 1.26575 1.87332 1.20869 0.98762 0.95978 0.92021 1.21915 0.90801 1.02697 1.04225 1.20524 1.00686 0.92629 0.97636 1.22044 1.01558 1.00263 0.93758 1.22213 1.00699 0.96204 0.98422 1.20537 1.02029 0.92704 0.97454 1.21419 1.00116 0.98785 0.93053 0.93139 0.92768 0.91652 0.90440 0.94196 0.83665 0.87983 0.91711 0.77014 0.91316 0.92024 0.92139 0.74997 0.92586 0.90880 0.89718 0.91405 0.88834 0.86355 0.86522 0.89477 0.90146 0.92204 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.95 71.98 0.64 -1.83 16 2 C -0.09 -1.49 2.57 -10.80 -0.03 -1.52 16 3 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.07 1.42 5.07 86.30 0.44 1.86 16 5 N -0.68 -20.01 5.58 -517.95 -2.89 -22.90 16 6 C 0.06 2.17 6.17 85.56 0.53 2.70 16 7 C 0.44 20.65 7.82 87.66 0.69 21.34 16 8 O -0.62 -34.04 15.78 -3.08 -0.05 -34.09 16 9 N -0.57 -29.42 5.29 -306.97 -1.62 -31.04 16 10 C -0.34 -19.09 9.68 84.04 0.81 -18.28 16 11 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 12 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 13 N -0.92 -49.71 13.05 21.66 0.28 -49.43 16 14 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 15 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 16 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 18 C 0.13 2.28 5.06 86.38 0.44 2.72 16 19 N -0.71 -10.79 5.10 -463.05 -2.36 -13.15 16 20 C 0.52 10.06 6.48 87.66 0.57 10.63 16 21 O -0.58 -16.60 15.90 -3.04 -0.05 -16.65 16 22 C -0.07 -0.99 0.63 -52.74 -0.03 -1.02 16 23 C -0.14 -1.37 7.72 71.98 0.56 -0.81 16 24 C -0.08 -0.84 4.76 29.71 0.14 -0.70 16 25 C -0.16 -1.51 9.40 27.03 0.25 -1.26 16 26 C -0.16 -1.46 9.15 27.03 0.25 -1.21 16 27 C -0.09 -0.91 5.48 29.65 0.16 -0.74 16 28 C -0.10 -1.45 4.32 30.73 0.13 -1.32 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 1.28 7.75 -2.39 -0.02 1.26 16 31 H 0.06 0.89 7.18 -2.38 -0.02 0.88 16 32 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.34 10.63 8.43 -89.69 -0.76 9.88 16 35 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 38 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.41 4.20 6.81 -92.71 -0.63 3.57 16 42 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.07 0.54 7.54 -2.39 -0.02 0.52 16 44 H 0.08 0.68 5.71 -2.39 -0.01 0.67 16 45 H 0.07 0.89 8.11 -2.38 -0.02 0.88 16 46 H 0.09 0.69 7.94 -2.39 -0.02 0.67 16 47 H 0.12 0.86 8.06 -2.91 -0.02 0.83 16 48 H 0.12 0.79 8.06 -2.91 -0.02 0.76 16 49 H 0.09 0.71 6.93 -2.38 -0.02 0.69 16 50 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 51 H 0.06 1.07 7.90 -2.38 -0.02 1.05 16 52 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 Total: -1.00 -71.62 413.65 0.16 -71.46 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -1.19 Total: 40.63 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 6.01 Total: 10.34 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -6.59 Total: -116.53 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -0.10 Total: -50.74 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -71.62 0.16 -71.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715224621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.565 kcal (2) G-P(sol) polarization free energy of solvation -71.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds