Wall clock time and date at job start Tue Mar 31 2020 20:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46798 * 2 1 4 4 C 1.52997 * 109.47054 * 120.00051 * 2 1 3 5 5 N 1.46892 * 109.47503 * 295.00134 * 4 2 1 6 6 C 1.46899 * 111.00315 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47349 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99779 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99808 * 179.97438 * 7 6 5 10 10 C 1.37099 * 119.99759 * 179.97438 * 9 7 6 11 11 H 1.08002 * 120.00192 * 0.02562 * 10 9 7 12 12 C 1.38948 * 120.00034 * 180.02562 * 10 9 7 13 13 N 1.31409 * 120.00345 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99936 * 0.02562 * 12 10 9 15 15 H 1.48509 * 109.46616 * 89.99970 * 14 12 10 16 16 H 1.48494 * 109.47412 * 209.99758 * 14 12 10 17 17 H 1.48494 * 109.47160 * 330.00385 * 14 12 10 18 18 C 1.53004 * 109.47213 * 240.00598 * 2 1 3 19 19 N 1.46503 * 109.46894 * 64.99603 * 18 2 1 20 20 C 1.34780 * 119.99445 * 180.02562 * 19 18 2 21 21 O 1.21281 * 120.00344 * 359.97438 * 20 19 18 22 22 C 1.50696 * 119.99890 * 180.02562 * 20 19 18 23 23 C 1.53003 * 109.63890 * 294.09599 * 22 20 19 24 24 C 1.53021 * 109.64379 * 173.46178 * 22 20 19 25 25 C 1.50071 * 110.14667 * 289.74768 * 24 22 20 26 26 C 1.29441 * 124.07245 * 342.86931 * 25 24 22 27 27 C 1.50062 * 124.08162 * 0.46813 * 26 25 24 28 28 C 1.53029 * 110.14615 * 342.87152 * 27 26 25 29 29 H 1.09005 * 109.47572 * 59.99820 * 1 2 3 30 30 H 1.09001 * 109.47375 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47370 * 299.99644 * 1 2 3 32 32 H 1.09000 * 109.46803 * 55.00448 * 4 2 1 33 33 H 1.09008 * 109.46588 * 175.00092 * 4 2 1 34 34 H 1.00902 * 110.99969 * 303.95482 * 5 4 2 35 35 H 1.09002 * 109.46670 * 300.00095 * 6 5 4 36 36 H 1.08997 * 109.47480 * 59.99701 * 6 5 4 37 37 H 0.96993 * 120.00131 * 0.02562 * 9 7 6 38 38 H 0.96997 * 120.00448 * 179.97438 * 13 12 10 39 39 H 1.08993 * 109.46772 * 184.99979 * 18 2 1 40 40 H 1.09003 * 109.46655 * 305.00005 * 18 2 1 41 41 H 0.96991 * 120.00127 * 0.02562 * 19 18 2 42 42 H 1.08999 * 109.46852 * 60.00248 * 23 22 20 43 43 H 1.09000 * 109.47216 * 179.97438 * 23 22 20 44 44 H 1.08997 * 109.47120 * 300.00248 * 23 22 20 45 45 H 1.08992 * 109.35943 * 49.95661 * 24 22 20 46 46 H 1.09006 * 109.35720 * 169.54281 * 24 22 20 47 47 H 1.08001 * 117.95737 * 162.88996 * 25 24 22 48 48 H 1.08008 * 117.95821 * 180.48731 * 26 25 24 49 49 H 1.08996 * 109.36025 * 222.66320 * 27 26 25 50 50 H 1.09000 * 109.35905 * 103.07293 * 27 26 25 51 51 H 1.09001 * 109.63826 * 289.75050 * 28 27 26 52 52 H 1.08998 * 109.64486 * 169.11996 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6514 0.0373 2.4456 6 6 2.1258 -0.6267 3.6671 7 6 1.7087 0.1784 4.8708 8 8 1.0787 1.2046 4.7254 9 7 2.0358 -0.2420 6.1089 10 6 1.6568 0.4907 7.2040 11 1 1.0958 1.4045 7.0746 12 6 1.9944 0.0577 8.4804 13 7 1.6308 0.7596 9.5301 14 14 2.9654 -1.5224 8.7042 15 1 4.4185 -1.2162 8.6931 16 1 2.6013 -2.1477 10.0009 17 1 2.6485 -2.4593 7.5965 18 6 2.0400 -0.7211 -1.2493 19 7 1.6524 0.0356 -2.4424 20 6 1.9955 -0.4133 -3.6660 21 8 2.6256 -1.4434 -3.7794 22 6 1.5973 0.3653 -4.8933 23 6 0.0742 0.3534 -5.0380 24 6 2.2410 -0.2619 -6.1317 25 6 3.7223 -0.0211 -6.1224 26 6 4.3071 0.8725 -5.3911 27 6 3.5870 1.7859 -4.4429 28 6 2.0921 1.8119 -4.7692 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6054 -1.7198 1.2950 33 1 3.1263 -0.7994 1.2055 34 1 1.9881 0.9872 2.3967 35 1 1.6921 -1.6247 3.7299 36 1 3.2126 -0.7039 3.6400 37 1 2.5399 -1.0624 6.2251 38 1 1.8662 0.4572 10.4211 39 1 3.1263 -0.7993 -1.2056 40 1 1.6054 -1.7197 -1.2953 41 1 1.1488 0.8596 -2.3517 42 1 -0.3780 0.8097 -4.1575 43 1 -0.2108 0.9175 -5.9261 44 1 -0.2737 -0.6752 -5.1334 45 1 2.0494 -1.3349 -6.1343 46 1 1.8083 0.1825 -7.0281 47 1 4.3385 -0.6312 -6.7662 48 1 5.3803 0.9669 -5.4684 49 1 3.9939 2.7931 -4.5322 50 1 3.7277 1.4306 -3.4220 51 1 1.9319 2.3360 -5.7114 52 1 1.5511 2.3169 -3.9690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715224642.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:56 Heat of formation + Delta-G solvation = -73.358618 kcal Electronic energy + Delta-G solvation = -29035.681738 eV Core-core repulsion = 25034.568551 eV Total energy + Delta-G solvation = -4001.113186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.07531 -38.63022 -38.03833 -37.00834 -34.99729 -33.95146 -33.46274 -32.25757 -31.64422 -31.05310 -27.59459 -27.09695 -26.90060 -24.96892 -23.56748 -23.47327 -22.54236 -20.79380 -20.11554 -19.36821 -18.61326 -18.21841 -16.72690 -16.58530 -16.09390 -15.94887 -15.67547 -15.51074 -15.00596 -14.74117 -14.59747 -14.34727 -14.21975 -13.92181 -13.64085 -13.34756 -13.23536 -13.09227 -12.91540 -12.73463 -12.64710 -12.58099 -12.40602 -12.33988 -12.08489 -12.01913 -11.93470 -11.78406 -11.25378 -11.11651 -11.08520 -10.92780 -10.83587 -10.60101 -10.57750 -9.98521 -9.88242 -9.58057 -9.36778 -9.17863 -8.60352 -8.20671 -8.14494 -6.31893 -3.83385 2.04987 2.44658 2.88889 3.02451 3.06260 3.14716 3.73378 4.04919 4.08266 4.10420 4.20217 4.25939 4.60501 4.65586 4.71926 4.74807 4.82737 4.88349 4.96234 5.00971 5.03810 5.21084 5.21464 5.24464 5.28482 5.29256 5.40107 5.40930 5.47491 5.54088 5.60666 5.61619 5.64641 5.66251 5.72906 5.78647 5.80736 5.81207 5.84939 5.93060 6.06616 6.22229 6.33678 6.35209 6.67499 7.06244 7.24495 7.54576 7.57717 8.00692 8.13599 8.58961 8.94103 9.41681 9.81820 10.81189 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026881 B = 0.001686 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.385196 B =16604.798363 C =16790.680886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.076 0.924 4 C 0.066 3.934 5 N -0.665 5.665 6 C 0.048 3.952 7 C 0.450 3.550 8 O -0.565 6.565 9 N -0.591 5.591 10 C -0.305 4.305 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.269 1.269 18 C 0.125 3.875 19 N -0.727 5.727 20 C 0.527 3.473 21 O -0.535 6.535 22 C -0.082 4.082 23 C -0.141 4.141 24 C -0.069 4.069 25 C -0.139 4.139 26 C -0.164 4.164 27 C -0.096 4.096 28 C -0.108 4.108 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.029 0.971 34 H 0.350 0.650 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.371 0.629 38 H 0.273 0.727 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.399 0.601 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.103 0.897 48 H 0.101 0.899 49 H 0.075 0.925 50 H 0.073 0.927 51 H 0.077 0.923 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 -1.990 -32.150 32.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.095 0.905 4 C -0.064 4.064 5 N -0.298 5.298 6 C -0.085 4.085 7 C 0.236 3.764 8 O -0.447 6.447 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 C 0.001 3.999 19 N -0.379 5.379 20 C 0.313 3.687 21 O -0.411 6.411 22 C -0.085 4.085 23 C -0.198 4.198 24 C -0.106 4.106 25 C -0.157 4.157 26 C -0.182 4.182 27 C -0.133 4.133 28 C -0.145 4.145 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.169 0.831 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.234 0.766 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.094 0.906 50 H 0.091 0.909 51 H 0.096 0.904 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.454 -2.301 -32.031 32.146 hybrid contribution 1.653 -0.784 0.513 1.900 sum 3.107 -3.085 -31.517 31.820 Atomic orbital electron populations 1.21756 0.93687 1.02162 1.02103 1.21337 0.97650 0.99938 0.92936 0.90523 1.21899 0.97337 0.97970 0.89209 1.60033 1.64143 1.05915 0.99704 1.21702 0.97823 0.98719 0.90241 1.19709 0.85205 0.87880 0.83637 1.90560 1.42794 1.25908 1.85438 1.42211 1.51072 1.23725 1.06010 1.19430 1.33694 1.07585 0.82685 0.86284 1.25041 0.97874 0.98093 0.95167 1.69618 1.45589 1.38543 0.98371 0.86670 0.80795 0.83279 0.78638 1.19663 1.20157 1.19467 1.21370 0.99883 0.95438 0.83246 1.46007 1.58229 1.27923 1.05761 1.20360 0.78743 0.85330 0.84306 1.90694 1.39349 1.24467 1.86574 1.20924 0.97226 0.96286 0.94048 1.21839 0.92164 1.02934 1.02885 1.20343 0.92896 1.01764 0.95584 1.21900 0.96136 0.97766 0.99874 1.21927 0.99585 0.98170 0.98539 1.20498 0.94419 0.99408 0.98982 1.21709 0.95933 0.94010 1.02893 0.93709 0.92806 0.90400 0.90728 0.95272 0.83082 0.89468 0.93760 0.79682 0.91609 0.91660 0.91334 0.76558 0.91843 0.91185 0.91836 0.89942 0.90216 0.87928 0.88101 0.90640 0.90882 0.90397 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.95 37.16 0.33 -0.98 16 2 C -0.10 -0.89 2.57 -90.62 -0.23 -1.13 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.07 0.71 5.07 -3.83 -0.02 0.70 16 5 N -0.67 -9.68 5.58 -115.06 -0.64 -10.32 16 6 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 7 C 0.45 10.09 7.82 -10.98 -0.09 10.01 16 8 O -0.57 -14.97 15.78 5.55 0.09 -14.88 16 9 N -0.59 -14.01 5.09 -10.96 -0.06 -14.07 16 10 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 11 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -25.71 13.96 55.50 0.77 -24.93 16 14 Si 0.88 19.34 27.74 -169.99 -4.71 14.63 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 18 C 0.12 1.12 5.07 -4.04 -0.02 1.10 16 19 N -0.73 -5.80 5.03 -60.29 -0.30 -6.11 16 20 C 0.53 5.09 4.73 -10.99 -0.05 5.03 16 21 O -0.53 -7.29 15.32 5.56 0.09 -7.21 16 22 C -0.08 -0.56 0.66 -155.45 -0.10 -0.66 16 23 C -0.14 -0.73 8.46 37.16 0.31 -0.41 16 24 C -0.07 -0.51 4.55 -28.18 -0.13 -0.64 16 25 C -0.14 -1.15 9.08 -35.90 -0.33 -1.48 16 26 C -0.16 -1.35 9.61 -35.90 -0.35 -1.69 16 27 C -0.10 -0.68 5.59 -28.18 -0.16 -0.83 16 28 C -0.11 -0.61 4.71 -26.51 -0.12 -0.73 16 29 H 0.04 0.34 7.18 -51.93 -0.37 -0.03 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.92 7.75 -51.93 -0.40 0.52 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.03 0.30 8.14 -51.92 -0.42 -0.12 16 34 H 0.35 5.26 8.43 -39.29 -0.33 4.93 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.40 2.41 6.80 -40.82 -0.28 2.13 16 42 H 0.06 0.28 8.01 -51.93 -0.42 -0.14 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.71 7.67 -51.93 -0.40 0.31 16 46 H 0.08 0.44 8.11 -51.93 -0.42 0.02 16 47 H 0.10 0.79 8.06 -52.49 -0.42 0.37 16 48 H 0.10 0.77 8.06 -52.48 -0.42 0.35 16 49 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.60 7.33 -51.93 -0.38 0.22 16 51 H 0.08 0.38 8.12 -51.93 -0.42 -0.04 16 52 H 0.07 0.31 7.55 -51.93 -0.39 -0.08 16 LS Contribution 412.03 15.07 6.21 6.21 Total: -1.00 -34.22 412.03 -8.89 -43.11 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -9.10 Total: 12.29 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.23 Total: 1.28 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.23 Total: -55.42 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: 0.17 Total: -22.09 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.63 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.22 -8.89 -43.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715224642.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.253 kcal (2) G-P(sol) polarization free energy of solvation -34.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds