Wall clock time and date at job start Tue Mar 31 2020 20:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 C 1.53001 * 109.47204 * 185.00089 * 4 2 1 6 6 N 1.46899 * 109.47229 * 179.97438 * 5 4 2 7 7 C 1.46899 * 111.00016 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47281 * 180.02562 * 7 6 5 9 9 O 1.21295 * 119.99777 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00141 * 180.02562 * 8 7 6 11 11 C 1.37092 * 120.00113 * 180.02562 * 10 8 7 12 12 H 1.08001 * 119.99737 * 359.97438 * 11 10 8 13 13 C 1.38945 * 120.00343 * 179.97438 * 11 10 8 14 14 N 1.31411 * 120.00191 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99903 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47409 * 89.99523 * 15 13 11 17 17 H 1.48498 * 109.47528 * 209.99989 * 15 13 11 18 18 H 1.48499 * 109.47032 * 329.99863 * 15 13 11 19 19 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 20 20 C 1.34777 * 119.99665 * 85.27876 * 19 2 1 21 21 O 1.21283 * 119.99990 * 359.71991 * 20 19 2 22 22 C 1.50698 * 119.99538 * 179.72653 * 20 19 2 23 23 H 1.08997 * 115.57847 * 325.84179 * 22 20 19 24 24 C 1.52307 * 117.53917 * 111.81704 * 22 20 19 25 25 H 1.08998 * 115.91239 * 0.84577 * 24 22 20 26 26 C 1.50466 * 120.89650 * 218.08480 * 24 22 20 27 27 C 1.52869 * 110.08565 * 310.03358 * 26 24 22 28 28 C 1.53300 * 108.58904 * 304.99769 * 27 26 24 29 29 C 1.52880 * 108.57917 * 74.44604 * 28 27 26 30 30 C 1.52072 * 60.63700 * 107.37373 * 24 22 20 31 31 H 1.08998 * 117.24941 * 252.85957 * 30 24 22 32 32 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 34 34 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 35 35 H 1.08996 * 109.47384 * 305.00224 * 4 2 1 36 36 H 1.08994 * 109.47052 * 65.00451 * 4 2 1 37 37 H 1.08996 * 109.47061 * 300.00333 * 5 4 2 38 38 H 1.09007 * 109.47011 * 60.00308 * 5 4 2 39 39 H 1.00895 * 111.00082 * 303.95793 * 6 5 4 40 40 H 1.08996 * 109.47408 * 300.00505 * 7 6 5 41 41 H 1.09006 * 109.46958 * 60.00814 * 7 6 5 42 42 H 0.96996 * 119.99833 * 359.97438 * 10 8 7 43 43 H 0.97004 * 119.99833 * 180.02562 * 14 13 11 44 44 H 0.97001 * 119.99790 * 264.99588 * 19 2 1 45 45 H 1.08996 * 109.57395 * 189.84063 * 26 24 22 46 46 H 1.09007 * 109.36141 * 70.09346 * 26 24 22 47 47 H 1.08998 * 109.61688 * 185.26665 * 27 26 24 48 48 H 1.09002 * 109.76934 * 64.81679 * 27 26 24 49 49 H 1.09001 * 109.62060 * 314.71544 * 28 27 26 50 50 H 1.09000 * 109.76841 * 194.25549 * 28 27 26 51 51 H 1.08998 * 109.35334 * 185.26752 * 29 28 27 52 52 H 1.09001 * 109.35806 * 65.68592 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 7 4.0544 -1.3051 2.5136 7 6 5.5180 -1.2226 2.6086 8 6 5.9824 -1.9424 3.8485 9 8 5.1736 -2.4724 4.5808 10 7 7.2963 -1.9971 4.1437 11 6 7.7188 -2.6523 5.2713 12 1 6.9986 -3.1243 5.9234 13 6 9.0733 -2.7093 5.5754 14 7 9.4783 -3.3378 6.6561 15 14 10.3188 -1.8924 4.4481 16 1 10.5340 -0.4888 4.8826 17 1 11.6044 -2.6328 4.5115 18 1 9.8080 -1.9060 3.0538 19 7 2.0184 -0.6906 -1.1961 20 6 2.1524 -0.0169 -2.3557 21 8 1.8639 1.1598 -2.4102 22 6 2.6607 -0.7259 -3.5845 23 1 3.4021 -1.5045 -3.4057 24 6 1.6820 -0.9338 -4.7329 25 1 0.6786 -0.5358 -4.5816 26 6 1.6940 -2.2052 -5.5376 27 6 3.1167 -2.5208 -5.9994 28 6 3.6645 -1.3072 -6.7590 29 6 4.0067 -0.2132 -5.7473 30 6 2.7915 0.0963 -4.8759 31 1 2.5059 1.1472 -4.8284 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.6053 -0.2617 2.1370 36 1 1.7517 -1.7714 1.2057 37 1 3.9994 -1.0727 0.4261 38 1 3.8531 0.4371 1.3575 39 1 3.6165 -0.9395 3.3458 40 1 5.9658 -1.6870 1.7301 41 1 5.8202 -0.1766 2.6606 42 1 7.9430 -1.5736 3.5579 43 1 10.4240 -3.3772 6.8686 44 1 2.2491 -1.6318 -1.1525 45 1 1.0498 -2.0916 -6.4094 46 1 1.3251 -3.0258 -4.9223 47 1 3.1034 -3.3893 -6.6579 48 1 3.7477 -2.7268 -5.1348 49 1 2.9100 -0.9396 -7.4544 50 1 4.5619 -1.5908 -7.3088 51 1 4.3091 0.6888 -6.2792 52 1 4.8283 -0.5499 -5.1151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715638007.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:55 Heat of formation + Delta-G solvation = -71.390201 kcal Electronic energy + Delta-G solvation = -28647.799910 eV Core-core repulsion = 24646.772081 eV Total energy + Delta-G solvation = -4001.027829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.87779 -39.14246 -38.48585 -36.91950 -35.06905 -33.89045 -33.51775 -31.81976 -31.61720 -31.28830 -29.38477 -26.44756 -25.98360 -24.02697 -23.10965 -22.99875 -22.14559 -20.96180 -20.40812 -19.38873 -18.97804 -18.34589 -17.73470 -16.66169 -16.13088 -15.83155 -15.66071 -15.13392 -14.94484 -14.74510 -14.43941 -14.38649 -14.35016 -13.91051 -13.85834 -13.70468 -13.55292 -13.01725 -12.81173 -12.78116 -12.59426 -12.49139 -12.35524 -12.17810 -12.16278 -11.72527 -11.57352 -11.36934 -11.32857 -11.28681 -11.15612 -10.98046 -10.71752 -10.60389 -10.31094 -10.21880 -9.98532 -9.90700 -9.58358 -9.32055 -8.60920 -8.21239 -8.15521 -6.32049 -3.83518 2.23705 2.85711 3.01925 3.06037 3.14289 3.39201 3.72923 3.98152 4.09478 4.14976 4.25794 4.30762 4.53964 4.57652 4.65190 4.72059 4.76542 4.87297 4.89009 4.92124 4.96570 5.07917 5.14992 5.19560 5.24195 5.26807 5.30818 5.46350 5.47595 5.50416 5.53137 5.53522 5.58605 5.66697 5.67435 5.76723 5.79496 5.83394 5.86016 5.86556 5.89907 5.94071 5.98216 6.04565 6.29966 7.06768 7.27461 7.55024 7.57637 8.00908 8.13453 8.58803 8.93922 9.41437 9.81620 10.81030 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.002009 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.712173 B =13931.974890 C =15553.438552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.087 0.913 4 C -0.126 4.126 5 C 0.059 3.941 6 N -0.669 5.669 7 C 0.048 3.952 8 C 0.450 3.550 9 O -0.565 6.565 10 N -0.591 5.591 11 C -0.305 4.305 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.881 5.881 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.276 1.276 18 H -0.269 1.269 19 N -0.720 5.720 20 C 0.544 3.456 21 O -0.544 6.544 22 C -0.192 4.192 23 H 0.124 0.876 24 C -0.109 4.109 25 H 0.100 0.900 26 C -0.091 4.091 27 C -0.125 4.125 28 C -0.120 4.120 29 C -0.093 4.093 30 C -0.108 4.108 31 H 0.116 0.884 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.027 0.973 39 H 0.351 0.649 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.402 0.598 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.064 0.936 51 H 0.070 0.930 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.729 6.119 -27.702 31.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.105 0.895 4 C -0.164 4.164 5 C -0.070 4.070 6 N -0.302 5.302 7 C -0.085 4.085 8 C 0.235 3.765 9 O -0.447 6.447 10 N -0.230 5.230 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.521 5.521 15 Si 0.706 3.294 16 H -0.197 1.197 17 H -0.201 1.201 18 H -0.195 1.195 19 N -0.371 5.371 20 C 0.331 3.669 21 O -0.421 6.421 22 C -0.213 4.213 23 H 0.141 0.859 24 C -0.128 4.128 25 H 0.118 0.882 26 C -0.128 4.128 27 C -0.163 4.163 28 C -0.157 4.157 29 C -0.130 4.130 30 C -0.127 4.127 31 H 0.134 0.866 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.170 0.830 40 H 0.104 0.896 41 H 0.062 0.938 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.237 0.763 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.083 0.917 51 H 0.088 0.912 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.300 5.919 -27.352 31.894 hybrid contribution 1.481 1.016 -0.319 1.824 sum -13.819 6.935 -27.671 31.698 Atomic orbital electron populations 1.22150 0.95073 1.02265 1.02488 1.20975 0.94054 0.97485 0.83673 0.89478 1.21877 0.95524 1.02082 0.96905 1.21962 0.94647 0.96126 0.94284 1.60064 1.04666 1.60055 1.05412 1.21698 0.89344 0.98742 0.98682 1.19713 0.82952 0.85836 0.87963 1.90563 1.52991 1.49264 1.51847 1.42210 1.05978 1.50641 1.24182 1.19431 0.93509 1.30500 0.99941 0.86275 1.25044 0.96996 0.97462 0.96705 1.69623 1.16287 1.41636 1.24558 0.86667 0.81932 0.80173 0.80588 1.19653 1.20146 1.19488 1.46077 1.67283 1.14122 1.09623 1.19696 0.76855 0.86625 0.83734 1.90687 1.50509 1.15991 1.84935 1.22505 1.05260 1.04685 0.88846 0.85854 1.21462 0.95528 0.98188 0.97643 0.88226 1.20632 0.97524 0.95399 0.99224 1.21647 0.96297 0.97968 1.00355 1.21576 1.01056 0.95411 0.97677 1.21102 0.95741 0.99175 0.97004 1.22332 0.97668 0.97689 0.94995 0.86626 0.92290 0.91473 0.92271 0.90136 0.90123 0.91183 0.95518 0.83000 0.89590 0.93799 0.79692 0.91607 0.76302 0.90869 0.91139 0.91611 0.91676 0.91611 0.91705 0.91175 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.49 37.16 0.35 -0.98 16 2 C 0.14 1.28 2.58 -67.93 -0.17 1.11 16 3 H 0.09 0.94 7.57 -51.93 -0.39 0.54 16 4 C -0.13 -1.15 5.01 -26.73 -0.13 -1.29 16 5 C 0.06 0.67 5.57 -3.82 -0.02 0.65 16 6 N -0.67 -10.10 6.12 -115.05 -0.70 -10.80 16 7 C 0.05 0.80 6.17 -4.98 -0.03 0.77 16 8 C 0.45 10.23 7.82 -10.98 -0.09 10.14 16 9 O -0.56 -15.17 15.78 5.54 0.09 -15.08 16 10 N -0.59 -14.12 5.09 -10.96 -0.06 -14.18 16 11 C -0.31 -8.66 10.16 -14.94 -0.15 -8.81 16 12 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 13 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 14 N -0.88 -25.76 13.96 55.50 0.77 -24.99 16 15 Si 0.88 19.39 27.74 -169.99 -4.71 14.67 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 18 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 19 N -0.72 -6.09 4.53 -53.81 -0.24 -6.33 16 20 C 0.54 5.56 7.58 -10.99 -0.08 5.47 16 21 O -0.54 -7.54 15.92 5.55 0.09 -7.45 16 22 C -0.19 -1.49 5.34 -91.79 -0.49 -1.98 16 23 H 0.12 0.81 7.31 -51.93 -0.38 0.43 16 24 C -0.11 -0.75 5.53 -92.71 -0.51 -1.27 16 25 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 26 C -0.09 -0.48 5.92 -28.06 -0.17 -0.64 16 27 C -0.13 -0.64 5.70 -26.64 -0.15 -0.79 16 28 C -0.12 -0.63 5.92 -26.64 -0.16 -0.79 16 29 C -0.09 -0.58 5.83 -26.94 -0.16 -0.73 16 30 C -0.11 -0.83 5.75 -90.90 -0.52 -1.35 16 31 H 0.12 1.07 7.67 -51.93 -0.40 0.67 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 38 H 0.03 0.30 8.14 -51.92 -0.42 -0.12 16 39 H 0.35 5.48 8.43 -39.29 -0.33 5.14 16 40 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.37 7.77 5.76 -40.82 -0.24 7.54 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.40 2.71 8.60 -40.82 -0.35 2.36 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.06 0.35 7.15 -51.93 -0.37 -0.02 16 49 H 0.07 0.34 8.04 -51.93 -0.42 -0.08 16 50 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 51 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 52 H 0.07 0.44 8.06 -51.93 -0.42 0.02 16 LS Contribution 415.77 15.07 6.27 6.27 Total: -1.00 -34.08 415.77 -10.26 -44.34 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -9.17 Total: 13.03 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -2.58 Total: 0.53 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.23 Total: -56.30 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.18 Total: -22.54 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.08 -10.26 -44.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715638007.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.053 kcal (2) G-P(sol) polarization free energy of solvation -34.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds