Wall clock time and date at job start Tue Mar 31 2020 20:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.47108 * 120.00317 * 2 1 4 4 O 1.21609 * 120.00149 * 180.02562 * 3 2 1 5 5 N 1.34777 * 119.99958 * 359.97438 * 3 2 1 6 6 C 1.46497 * 120.00376 * 179.97438 * 5 3 2 7 7 H 1.09002 * 109.46725 * 35.00314 * 6 5 3 8 8 C 1.52997 * 109.47188 * 275.00479 * 6 5 3 9 9 C 1.52992 * 109.47081 * 155.00022 * 6 5 3 10 10 N 1.46903 * 109.47578 * 305.00372 * 9 6 5 11 11 C 1.46899 * 110.99917 * 293.95497 * 10 9 6 12 12 C 1.46899 * 111.00358 * 170.00162 * 10 9 6 13 13 C 1.50689 * 109.47270 * 189.99960 * 12 10 9 14 14 O 1.21297 * 120.00156 * 359.97438 * 13 12 10 15 15 N 1.34781 * 120.00061 * 180.02562 * 13 12 10 16 16 C 1.37102 * 119.99954 * 180.02562 * 15 13 12 17 17 H 1.07997 * 120.00093 * 359.97438 * 16 15 13 18 18 C 1.38948 * 119.99760 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00317 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99610 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47294 * 59.99956 * 20 18 16 22 22 H 1.48506 * 109.46962 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47343 * 299.99566 * 20 18 16 24 24 C 1.32989 * 120.00005 * 179.97438 * 2 1 3 25 25 C 1.51456 * 126.34429 * 179.68877 * 24 2 1 26 26 C 1.54276 * 106.84935 * 180.24470 * 25 24 2 27 27 C 1.54982 * 103.66300 * 23.48429 * 26 25 24 28 28 C 1.51844 * 126.34106 * 0.02562 * 24 2 1 29 29 H 1.09000 * 109.46996 * 89.99862 * 1 2 3 30 30 H 1.08997 * 109.47339 * 210.00020 * 1 2 3 31 31 H 1.09001 * 109.46714 * 330.00729 * 1 2 3 32 32 H 0.97006 * 119.99702 * 0.02562 * 5 3 2 33 33 H 1.09002 * 109.47153 * 299.99573 * 8 6 5 34 34 H 1.09001 * 109.46832 * 179.97438 * 8 6 5 35 35 H 1.09004 * 109.47261 * 59.99745 * 8 6 5 36 36 H 1.09001 * 109.47563 * 65.00613 * 9 6 5 37 37 H 1.09004 * 109.47313 * 185.00269 * 9 6 5 38 38 H 1.09001 * 109.47267 * 59.99603 * 11 10 9 39 39 H 1.08993 * 109.47221 * 179.97438 * 11 10 9 40 40 H 1.09003 * 109.47189 * 299.99845 * 11 10 9 41 41 H 1.09004 * 109.46750 * 310.00129 * 12 10 9 42 42 H 1.09003 * 109.47230 * 69.99587 * 12 10 9 43 43 H 0.96996 * 119.99983 * 359.97438 * 15 13 12 44 44 H 0.96995 * 119.99892 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.98084 * 299.73270 * 25 24 2 46 46 H 1.08996 * 109.98007 * 61.03384 * 25 24 2 47 47 H 1.09005 * 110.79081 * 264.85286 * 26 25 24 48 48 H 1.09004 * 110.42567 * 141.93853 * 26 25 24 49 49 H 1.09004 * 110.82665 * 204.48718 * 27 26 25 50 50 H 1.08999 * 110.83116 * 80.91294 * 27 26 25 51 51 H 1.09002 * 110.43989 * 274.92028 * 28 24 2 52 52 H 1.08994 * 110.44391 * 37.31913 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2740 0.0000 4 8 3.4587 1.2739 -0.0005 5 7 1.5688 2.4412 -0.0005 6 6 2.3012 3.7099 0.0000 7 1 3.2123 3.6036 -0.5888 8 6 2.6641 4.0887 1.4373 9 6 1.4245 4.8052 -0.6102 10 7 0.9776 4.3874 -1.9458 11 6 2.1120 4.2901 -2.8740 12 6 -0.0512 5.2981 -2.4655 13 6 -0.6583 4.7105 -3.7133 14 8 -0.2717 3.6386 -4.1291 15 7 -1.6302 5.3764 -4.3679 16 6 -2.1829 4.8415 -5.5028 17 1 -1.8392 3.8868 -5.8726 18 6 -3.1845 5.5283 -6.1779 19 7 -3.6024 6.6903 -5.7283 20 14 -3.9371 4.7998 -7.7247 21 1 -4.5549 3.4881 -7.4042 22 1 -4.9767 5.7208 -8.2504 23 1 -2.8784 4.6114 -8.7489 24 6 2.1719 -1.1517 0.0005 25 6 3.6772 -1.3191 -0.0060 26 6 3.9584 -2.8360 -0.0089 27 6 2.6646 -3.4471 -0.6042 28 6 1.5626 -2.5425 0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5137 32 1 0.5987 2.4412 -0.0005 33 1 1.7530 4.1950 2.0261 34 1 3.2095 5.0324 1.4376 35 1 3.2887 3.3083 1.8721 36 1 0.5565 4.9732 0.0273 37 1 1.9995 5.7276 -0.6916 38 1 2.8263 3.5570 -2.4993 39 1 1.7532 3.9787 -3.8549 40 1 2.5984 5.2621 -2.9564 41 1 -0.8282 5.4356 -1.7134 42 1 0.4014 6.2614 -2.7006 43 1 -1.9392 6.2337 -4.0356 44 1 -4.3019 7.1695 -6.1994 45 1 4.0993 -0.8581 -0.8990 46 1 4.1064 -0.8644 0.8867 47 1 4.1232 -3.2009 1.0050 48 1 4.8159 -3.0627 -0.6425 49 1 2.5393 -4.4804 -0.2802 50 1 2.6684 -3.3785 -1.6920 51 1 1.3292 -2.8558 1.0182 52 1 0.6661 -2.5654 -0.6189 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716475211.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:42 Heat of formation + Delta-G solvation = -69.417839 kcal Electronic energy + Delta-G solvation = -29893.831063 eV Core-core repulsion = 25892.888762 eV Total energy + Delta-G solvation = -4000.942301 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.06062 -38.73350 -38.03057 -36.80659 -34.64585 -33.81904 -33.56655 -31.24774 -30.76630 -29.04868 -27.98501 -27.57246 -26.88046 -24.90817 -24.52131 -22.71320 -21.33520 -20.82532 -20.17899 -19.14658 -18.35357 -17.83273 -16.53049 -16.34678 -16.04031 -15.80543 -15.27224 -15.10740 -14.65588 -14.55943 -14.49189 -13.98558 -13.68468 -13.54027 -13.43883 -13.41257 -12.99748 -12.84788 -12.62666 -12.45786 -12.35783 -12.10836 -11.99308 -11.94087 -11.77304 -11.49850 -11.34092 -11.32024 -11.22637 -11.21973 -11.08906 -10.90597 -10.78720 -10.67106 -10.44549 -10.21608 -9.53801 -9.46775 -9.00336 -8.66000 -8.44409 -7.97964 -7.85695 -6.41938 -3.82673 1.42293 3.19555 3.25262 3.28714 3.29989 3.46229 3.90547 3.96933 4.23738 4.32071 4.51413 4.78247 4.83511 4.88927 5.00643 5.07062 5.13329 5.17700 5.23164 5.26134 5.29280 5.41491 5.45747 5.54103 5.57640 5.60892 5.62836 5.65624 5.69226 5.72893 5.74695 5.76805 5.91426 5.91676 5.96494 5.98871 6.00139 6.08203 6.12411 6.17366 6.28318 6.41982 6.57730 6.60147 6.68165 7.26177 7.37319 7.54787 7.75945 8.06195 8.44277 8.62000 9.18155 9.54557 10.06706 10.75789 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011782 B = 0.002610 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.862308 B =10723.515102 C =12390.477251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.181 4.181 3 C 0.558 3.442 4 O -0.552 6.552 5 N -0.702 5.702 6 C 0.148 3.852 7 H 0.087 0.913 8 C -0.161 4.161 9 C 0.042 3.958 10 N -0.514 5.514 11 C 0.022 3.978 12 C 0.045 3.955 13 C 0.444 3.556 14 O -0.576 6.576 15 N -0.565 5.565 16 C -0.298 4.298 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.903 5.903 20 Si 0.930 3.070 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.045 4.045 25 C -0.088 4.088 26 C -0.129 4.129 27 C -0.124 4.124 28 C -0.099 4.099 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.404 0.596 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.013 0.987 41 H 0.087 0.913 42 H 0.047 0.953 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.071 0.929 51 H 0.083 0.917 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.915 -10.343 16.009 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.184 4.184 3 C 0.348 3.652 4 O -0.433 6.433 5 N -0.353 5.353 6 C 0.042 3.958 7 H 0.105 0.895 8 C -0.220 4.220 9 C -0.087 4.087 10 N -0.238 5.238 11 C -0.126 4.126 12 C -0.087 4.087 13 C 0.230 3.770 14 O -0.460 6.460 15 N -0.202 5.202 16 C -0.428 4.428 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.544 5.544 20 Si 0.757 3.243 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.047 4.047 25 C -0.124 4.124 26 C -0.167 4.167 27 C -0.162 4.162 28 C -0.135 4.135 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.240 0.760 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.032 0.968 41 H 0.105 0.895 42 H 0.065 0.935 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.089 0.911 51 H 0.101 0.899 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.664 -11.365 15.674 22.103 hybrid contribution -0.840 1.266 -0.675 1.663 sum 9.825 -10.099 14.998 20.578 Atomic orbital electron populations 1.20706 0.90684 1.02343 1.03003 1.20784 0.96123 0.91934 1.09519 1.18202 0.87075 0.84012 0.75957 1.90729 1.13610 1.87797 1.51151 1.45719 1.10577 1.04717 1.74252 1.20901 0.95772 0.83083 0.95996 0.89525 1.22148 1.01733 1.01771 0.96301 1.22502 0.98909 0.95744 0.91517 1.61563 1.11730 1.49081 1.01379 1.22549 0.92117 0.98762 0.99143 1.21880 0.95287 0.93899 0.97589 1.19729 0.83799 0.87161 0.86359 1.90495 1.63747 1.22705 1.69022 1.41866 1.33118 1.20824 1.24377 1.19636 1.16427 1.05383 1.01333 0.88010 1.25249 0.97248 0.95772 0.99665 1.69601 1.30034 1.13887 1.40894 0.85933 0.78613 0.78585 0.81178 1.19893 1.20999 1.19940 1.22646 0.96339 0.93501 0.92170 1.21226 0.92303 0.95207 1.03694 1.22473 0.97767 0.95567 1.00881 1.22515 0.94522 0.98491 1.00623 1.21541 0.98690 0.91665 1.01646 0.90534 0.91566 0.91799 0.75965 0.92425 0.91794 0.91946 0.90357 0.93621 0.92114 0.88651 0.96810 0.89486 0.93516 0.77541 0.91849 0.89721 0.90051 0.91602 0.91412 0.91208 0.91062 0.89857 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.16 36.00 0.33 -0.82 16 2 C -0.18 -2.25 6.00 -102.85 -0.62 -2.87 16 3 C 0.56 8.03 7.71 -12.66 -0.10 7.93 16 4 O -0.55 -9.21 13.77 5.27 0.07 -9.14 16 5 N -0.70 -9.02 4.75 -54.99 -0.26 -9.28 16 6 C 0.15 1.79 2.35 -67.94 -0.16 1.64 16 7 H 0.09 1.23 6.23 -51.93 -0.32 0.90 16 8 C -0.16 -1.61 9.48 37.16 0.35 -1.25 16 9 C 0.04 0.51 4.52 -3.83 -0.02 0.49 16 10 N -0.51 -8.20 4.22 -244.38 -1.03 -9.23 16 11 C 0.02 0.37 8.96 60.06 0.54 0.91 16 12 C 0.04 0.77 5.45 -4.98 -0.03 0.74 16 13 C 0.44 10.24 7.48 -10.99 -0.08 10.15 16 14 O -0.58 -15.20 13.91 5.54 0.08 -15.12 16 15 N -0.57 -14.09 5.29 -10.97 -0.06 -14.15 16 16 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 17 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 20 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 C -0.04 -0.51 6.12 -100.23 -0.61 -1.13 16 25 C -0.09 -1.01 4.81 -26.84 -0.13 -1.13 16 26 C -0.13 -1.12 6.88 -25.02 -0.17 -1.30 16 27 C -0.12 -1.01 6.94 -24.70 -0.17 -1.18 16 28 C -0.10 -0.87 5.66 -26.33 -0.15 -1.02 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.57 7.22 -51.93 -0.37 0.20 16 31 H 0.06 0.60 6.70 -51.93 -0.35 0.26 16 32 H 0.40 4.89 6.70 -40.82 -0.27 4.62 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 37 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 38 H 0.06 1.00 6.58 -51.93 -0.34 0.65 16 39 H 0.10 1.95 5.82 -51.93 -0.30 1.65 16 40 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.09 1.32 7.93 -51.93 -0.41 0.91 16 42 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 43 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.08 1.13 7.67 -51.93 -0.40 0.73 16 46 H 0.08 1.00 7.68 -51.93 -0.40 0.60 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 52 H 0.08 0.66 7.68 -51.93 -0.40 0.26 16 LS Contribution 411.73 15.07 6.20 6.20 Total: -1.00 -31.79 411.73 -9.44 -41.23 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -8.89 Total: 13.91 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.26 Total: 3.30 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.63 Total: -56.31 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: 0.15 Total: -24.26 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.79 -9.44 -41.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716475211.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.186 kcal (2) G-P(sol) polarization free energy of solvation -31.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds