Wall clock time and date at job start Tue Mar 31 2020 20:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.47108 * 120.00317 * 2 1 4 4 O 1.21609 * 120.00149 * 180.02562 * 3 2 1 5 5 N 1.34777 * 119.99958 * 359.97438 * 3 2 1 6 6 C 1.46497 * 120.00376 * 179.97438 * 5 3 2 7 7 H 1.09002 * 109.46725 * 35.00314 * 6 5 3 8 8 C 1.52997 * 109.47188 * 275.00479 * 6 5 3 9 9 C 1.52992 * 109.47081 * 155.00022 * 6 5 3 10 10 N 1.46903 * 109.47578 * 305.00372 * 9 6 5 11 11 C 1.46899 * 110.99917 * 293.95497 * 10 9 6 12 12 C 1.46899 * 111.00358 * 170.00162 * 10 9 6 13 13 C 1.50689 * 109.47270 * 189.99960 * 12 10 9 14 14 O 1.21297 * 120.00156 * 359.97438 * 13 12 10 15 15 N 1.34781 * 120.00061 * 180.02562 * 13 12 10 16 16 C 1.37102 * 119.99954 * 180.02562 * 15 13 12 17 17 H 1.07997 * 120.00093 * 359.97438 * 16 15 13 18 18 C 1.38948 * 119.99760 * 180.02562 * 16 15 13 19 19 N 1.31412 * 120.00317 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99610 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47294 * 59.99956 * 20 18 16 22 22 H 1.48506 * 109.46962 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47343 * 299.99566 * 20 18 16 24 24 C 1.32989 * 120.00005 * 179.97438 * 2 1 3 25 25 C 1.51456 * 126.34429 * 179.68877 * 24 2 1 26 26 C 1.54276 * 106.84935 * 180.24470 * 25 24 2 27 27 C 1.54982 * 103.66300 * 23.48429 * 26 25 24 28 28 C 1.51844 * 126.34106 * 0.02562 * 24 2 1 29 29 H 1.09000 * 109.46996 * 89.99862 * 1 2 3 30 30 H 1.08997 * 109.47339 * 210.00020 * 1 2 3 31 31 H 1.09001 * 109.46714 * 330.00729 * 1 2 3 32 32 H 0.97006 * 119.99702 * 0.02562 * 5 3 2 33 33 H 1.09002 * 109.47153 * 299.99573 * 8 6 5 34 34 H 1.09001 * 109.46832 * 179.97438 * 8 6 5 35 35 H 1.09004 * 109.47261 * 59.99745 * 8 6 5 36 36 H 1.09001 * 109.47563 * 65.00613 * 9 6 5 37 37 H 1.09004 * 109.47313 * 185.00269 * 9 6 5 38 38 H 1.09001 * 109.47267 * 59.99603 * 11 10 9 39 39 H 1.08993 * 109.47221 * 179.97438 * 11 10 9 40 40 H 1.09003 * 109.47189 * 299.99845 * 11 10 9 41 41 H 1.09004 * 109.46750 * 310.00129 * 12 10 9 42 42 H 1.09003 * 109.47230 * 69.99587 * 12 10 9 43 43 H 0.96996 * 119.99983 * 359.97438 * 15 13 12 44 44 H 0.96995 * 119.99892 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.98084 * 299.73270 * 25 24 2 46 46 H 1.08996 * 109.98007 * 61.03384 * 25 24 2 47 47 H 1.09005 * 110.79081 * 264.85286 * 26 25 24 48 48 H 1.09004 * 110.42567 * 141.93853 * 26 25 24 49 49 H 1.09004 * 110.82665 * 204.48718 * 27 26 25 50 50 H 1.08999 * 110.83116 * 80.91294 * 27 26 25 51 51 H 1.09002 * 110.43989 * 274.92028 * 28 24 2 52 52 H 1.08994 * 110.44391 * 37.31913 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2740 0.0000 4 8 3.4587 1.2739 -0.0005 5 7 1.5688 2.4412 -0.0005 6 6 2.3012 3.7099 0.0000 7 1 3.2123 3.6036 -0.5888 8 6 2.6641 4.0887 1.4373 9 6 1.4245 4.8052 -0.6102 10 7 0.9776 4.3874 -1.9458 11 6 2.1120 4.2901 -2.8740 12 6 -0.0512 5.2981 -2.4655 13 6 -0.6583 4.7105 -3.7133 14 8 -0.2717 3.6386 -4.1291 15 7 -1.6302 5.3764 -4.3679 16 6 -2.1829 4.8415 -5.5028 17 1 -1.8392 3.8868 -5.8726 18 6 -3.1845 5.5283 -6.1779 19 7 -3.6024 6.6903 -5.7283 20 14 -3.9371 4.7998 -7.7247 21 1 -4.5549 3.4881 -7.4042 22 1 -4.9767 5.7208 -8.2504 23 1 -2.8784 4.6114 -8.7489 24 6 2.1719 -1.1517 0.0005 25 6 3.6772 -1.3191 -0.0060 26 6 3.9584 -2.8360 -0.0089 27 6 2.6646 -3.4471 -0.6042 28 6 1.5626 -2.5425 0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8901 0.5137 32 1 0.5987 2.4412 -0.0005 33 1 1.7530 4.1950 2.0261 34 1 3.2095 5.0324 1.4376 35 1 3.2887 3.3083 1.8721 36 1 0.5565 4.9732 0.0273 37 1 1.9995 5.7276 -0.6916 38 1 2.8263 3.5570 -2.4993 39 1 1.7532 3.9787 -3.8549 40 1 2.5984 5.2621 -2.9564 41 1 -0.8282 5.4356 -1.7134 42 1 0.4014 6.2614 -2.7006 43 1 -1.9392 6.2337 -4.0356 44 1 -4.3019 7.1695 -6.1994 45 1 4.0993 -0.8581 -0.8990 46 1 4.1064 -0.8644 0.8867 47 1 4.1232 -3.2009 1.0050 48 1 4.8159 -3.0627 -0.6425 49 1 2.5393 -4.4804 -0.2802 50 1 2.6684 -3.3785 -1.6920 51 1 1.3292 -2.8558 1.0182 52 1 0.6661 -2.5654 -0.6189 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716475211.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:40 Heat of formation + Delta-G solvation = -90.711775 kcal Electronic energy + Delta-G solvation = -29894.754438 eV Core-core repulsion = 25892.888762 eV Total energy + Delta-G solvation = -4001.865676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.11984 -40.32110 -39.05593 -38.08884 -36.08920 -35.51145 -34.51426 -33.24921 -31.75644 -29.84371 -29.48706 -28.36739 -28.01558 -26.65905 -25.54645 -23.96413 -22.38157 -21.56347 -21.22412 -20.94097 -19.82997 -19.31497 -17.83643 -17.47782 -17.22041 -16.71884 -16.59032 -16.50441 -16.27706 -15.81194 -15.59339 -15.51621 -15.11841 -14.95698 -14.51997 -14.24600 -14.15061 -13.91897 -13.65408 -13.50408 -13.41168 -13.29063 -13.19456 -13.10543 -12.88481 -12.79909 -12.74796 -12.65603 -12.44893 -12.38969 -12.15706 -12.12378 -11.93979 -11.86519 -11.71252 -11.49040 -11.43520 -10.62216 -10.25812 -10.04293 -9.97364 -9.59708 -9.20907 -8.44609 -5.92616 0.45422 1.40048 1.41855 1.52294 2.09458 2.25691 2.30126 2.43387 2.76579 3.22589 3.43472 3.50472 3.75377 3.78549 4.00122 4.14015 4.15820 4.20618 4.22519 4.32834 4.35289 4.42463 4.49673 4.53812 4.54113 4.58321 4.69289 4.69764 4.76022 4.78314 4.81272 4.85101 4.90037 4.93087 5.04896 5.05672 5.12937 5.15798 5.19727 5.21892 5.28475 5.40020 5.42716 5.53653 5.62921 5.71974 5.88480 6.06464 6.19092 6.63915 6.71619 7.16040 7.37639 7.60307 8.16874 8.72563 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011782 B = 0.002610 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.862308 B =10723.515102 C =12390.477251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.203 4.203 3 C 0.548 3.452 4 O -0.586 6.586 5 N -0.697 5.697 6 C 0.147 3.853 7 H 0.061 0.939 8 C -0.150 4.150 9 C 0.047 3.953 10 N -0.528 5.528 11 C 0.033 3.967 12 C 0.058 3.942 13 C 0.442 3.558 14 O -0.614 6.614 15 N -0.575 5.575 16 C -0.330 4.330 17 H 0.077 0.923 18 C -0.013 4.013 19 N -0.921 5.921 20 Si 0.989 3.011 21 H -0.272 1.272 22 H -0.271 1.271 23 H -0.274 1.274 24 C -0.046 4.046 25 C -0.089 4.089 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.095 4.095 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.409 0.591 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.031 0.969 41 H 0.117 0.883 42 H 0.067 0.933 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.093 0.907 50 H 0.063 0.937 51 H 0.104 0.896 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.012 -10.422 17.498 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.206 4.206 3 C 0.338 3.662 4 O -0.469 6.469 5 N -0.348 5.348 6 C 0.042 3.958 7 H 0.080 0.920 8 C -0.209 4.209 9 C -0.080 4.080 10 N -0.252 5.252 11 C -0.115 4.115 12 C -0.073 4.073 13 C 0.229 3.771 14 O -0.500 6.500 15 N -0.213 5.213 16 C -0.460 4.460 17 H 0.095 0.905 18 C -0.212 4.212 19 N -0.562 5.562 20 Si 0.813 3.187 21 H -0.197 1.197 22 H -0.195 1.195 23 H -0.200 1.200 24 C -0.048 4.048 25 C -0.126 4.126 26 C -0.161 4.161 27 C -0.159 4.159 28 C -0.132 4.132 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.245 0.755 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.135 0.865 42 H 0.085 0.915 43 H 0.230 0.770 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.090 0.910 49 H 0.112 0.888 50 H 0.081 0.919 51 H 0.122 0.878 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.747 -11.412 17.187 22.818 hybrid contribution -0.459 1.283 -1.104 1.753 sum 9.288 -10.130 16.083 21.155 Atomic orbital electron populations 1.20678 0.89156 1.03823 1.02390 1.20949 0.97230 0.91415 1.10967 1.18636 0.86918 0.85094 0.75550 1.90705 1.14977 1.88320 1.52863 1.45751 1.10775 1.04750 1.73509 1.20950 0.94786 0.82906 0.97153 0.92045 1.22050 1.02385 1.01925 0.94544 1.22580 1.00083 0.96117 0.89252 1.61476 1.11364 1.49701 1.02707 1.22311 0.92361 0.99485 0.97363 1.21763 0.96208 0.94096 0.95250 1.20809 0.82492 0.86397 0.87363 1.90482 1.64550 1.24566 1.70389 1.41927 1.33920 1.21198 1.24274 1.19576 1.17955 1.05241 1.03185 0.90510 1.25978 0.97077 0.96049 1.02122 1.69659 1.30245 1.14434 1.41847 0.85045 0.77922 0.78098 0.77623 1.19678 1.19528 1.19958 1.23027 0.96475 0.94807 0.90527 1.21201 0.92494 0.97211 1.01690 1.22461 0.98437 0.93193 1.02021 1.22535 0.93625 0.99594 1.00122 1.21624 0.98868 0.89745 1.02977 0.92061 0.89470 0.90992 0.75462 0.90739 0.90003 0.93698 0.87887 0.91669 0.92372 0.92764 0.95053 0.86502 0.91518 0.77035 0.91377 0.92471 0.91437 0.90081 0.90995 0.88801 0.91867 0.87836 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.09 9.16 71.23 0.65 -1.44 16 2 C -0.20 -5.12 6.00 -18.70 -0.11 -5.23 16 3 C 0.55 16.27 7.71 86.57 0.67 16.94 16 4 O -0.59 -20.63 13.77 -4.06 -0.06 -20.68 16 5 N -0.70 -17.80 4.75 -446.16 -2.12 -19.91 16 6 C 0.15 3.43 2.35 44.99 0.11 3.54 16 7 H 0.06 1.76 6.23 -2.39 -0.01 1.75 16 8 C -0.15 -2.74 9.48 71.98 0.68 -2.06 16 9 C 0.05 1.02 4.52 86.30 0.39 1.41 16 10 N -0.53 -16.20 4.22 -927.07 -3.92 -20.12 16 11 C 0.03 1.12 8.96 127.69 1.14 2.27 16 12 C 0.06 1.88 5.45 85.55 0.47 2.35 16 13 C 0.44 20.50 7.48 87.65 0.66 21.15 16 14 O -0.61 -33.44 13.91 -3.08 -0.04 -33.48 16 15 N -0.58 -28.99 5.29 -306.99 -1.62 -30.61 16 16 C -0.33 -18.57 9.68 84.04 0.81 -17.76 16 17 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 18 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 19 N -0.92 -49.28 13.05 21.66 0.28 -49.00 16 20 Si 0.99 42.84 29.55 68.60 2.03 44.86 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 24 C -0.05 -1.07 6.12 -17.01 -0.10 -1.18 16 25 C -0.09 -2.12 4.81 30.52 0.15 -1.98 16 26 C -0.12 -2.04 6.88 31.71 0.22 -1.82 16 27 C -0.12 -1.76 6.94 31.91 0.22 -1.54 16 28 C -0.10 -1.52 5.66 30.85 0.17 -1.34 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.35 7.22 -2.39 -0.02 1.34 16 31 H 0.07 1.29 6.70 -2.39 -0.02 1.27 16 32 H 0.41 9.57 6.70 -92.70 -0.62 8.95 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.10 1.77 7.93 -2.39 -0.02 1.75 16 37 H 0.07 1.21 8.12 -2.39 -0.02 1.19 16 38 H 0.06 1.97 6.58 -2.39 -0.02 1.95 16 39 H 0.05 2.30 5.82 -2.39 -0.01 2.29 16 40 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.12 3.16 7.93 -2.38 -0.02 3.14 16 42 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 43 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 44 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 45 H 0.06 1.66 7.67 -2.39 -0.02 1.64 16 46 H 0.07 1.77 7.68 -2.39 -0.02 1.75 16 47 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 48 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 49 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 50 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 52 H 0.08 1.27 7.68 -2.39 -0.02 1.25 16 Total: -1.00 -71.85 411.73 0.72 -71.13 By element: Atomic # 1 Polarization: 45.14 SS G_CDS: -0.43 Total: 44.71 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 6.59 Total: 13.10 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -7.37 Total: -119.64 kcal Atomic # 8 Polarization: -54.06 SS G_CDS: -0.10 Total: -54.16 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -71.85 0.72 -71.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716475211.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.579 kcal (2) G-P(sol) polarization free energy of solvation -71.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds