Wall clock time and date at job start Tue Mar 31 2020 20:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 N 1.46498 * 109.47113 * 174.99658 * 4 2 1 6 6 C 1.46506 * 119.99933 * 90.00022 * 5 4 2 7 7 C 1.34777 * 120.00228 * 269.99948 * 5 4 2 8 8 O 1.21281 * 120.00123 * 0.02562 * 7 5 4 9 9 C 1.50697 * 120.00156 * 179.97438 * 7 5 4 10 10 H 1.09000 * 115.54953 * 34.41640 * 9 7 5 11 11 C 1.53006 * 117.50329 * 248.75238 * 9 7 5 12 12 C 1.52998 * 117.50030 * 180.08995 * 9 7 5 13 13 H 1.09002 * 117.50163 * 0.02562 * 12 9 7 14 14 C 1.52999 * 117.49905 * 214.98012 * 12 9 7 15 15 C 1.53783 * 113.61539 * 157.49498 * 14 12 9 16 16 C 1.53776 * 87.08255 * 220.01967 * 15 14 12 17 17 C 1.53780 * 113.61438 * 59.99886 * 14 12 9 18 18 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 19 19 C 1.46892 * 111.00363 * 85.00189 * 18 2 1 20 20 C 1.50698 * 109.47411 * 179.97438 * 19 18 2 21 21 O 1.21286 * 119.99732 * 359.97438 * 20 19 18 22 22 N 1.34784 * 120.00029 * 179.97438 * 20 19 18 23 23 C 1.37088 * 119.99698 * 180.02562 * 22 20 19 24 24 H 1.08006 * 120.00549 * 359.97438 * 23 22 20 25 25 C 1.38954 * 119.99928 * 180.02562 * 23 22 20 26 26 N 1.31408 * 120.00308 * 180.02562 * 25 23 22 27 27 Si 1.86804 * 119.99830 * 359.97438 * 25 23 22 28 28 H 1.48491 * 109.47007 * 90.00227 * 27 25 23 29 29 H 1.48496 * 109.46998 * 210.00638 * 27 25 23 30 30 H 1.48500 * 109.46762 * 330.00221 * 27 25 23 31 31 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 32 32 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 33 33 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47223 * 295.00080 * 4 2 1 35 35 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 36 36 H 1.09000 * 109.46785 * 89.99850 * 6 5 4 37 37 H 1.09002 * 109.47006 * 210.00081 * 6 5 4 38 38 H 1.08997 * 109.47085 * 330.00385 * 6 5 4 39 39 H 1.08997 * 117.49459 * 359.97438 * 11 9 7 40 40 H 1.08991 * 117.50180 * 144.99753 * 11 9 7 41 41 H 1.09006 * 112.85144 * 288.80180 * 14 12 9 42 42 H 1.08997 * 113.61661 * 334.57125 * 15 14 12 43 43 H 1.09008 * 113.61376 * 105.47136 * 15 14 12 44 44 H 1.09000 * 113.61669 * 270.88494 * 16 15 14 45 45 H 1.08996 * 113.69179 * 139.99268 * 16 15 14 46 46 H 1.08995 * 113.61724 * 254.52793 * 17 14 12 47 47 H 1.09002 * 113.61274 * 25.34983 * 17 14 12 48 48 H 1.00903 * 111.00184 * 321.04231 * 18 2 1 49 49 H 1.08999 * 109.46953 * 300.00101 * 19 18 2 50 50 H 1.09001 * 109.47256 * 59.99520 * 19 18 2 51 51 H 0.96997 * 119.99752 * 359.97438 * 22 20 19 52 52 H 0.97001 * 120.00379 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.3344 0.2340 1.7612 7 6 4.0758 -1.8987 0.6115 8 8 3.3851 -2.7764 0.1387 9 6 5.5776 -2.0067 0.5506 10 1 6.1137 -1.5922 1.4044 11 6 6.2393 -1.8887 -0.8239 12 6 6.1701 -3.2469 -0.1214 13 1 5.4737 -3.9847 -0.5198 14 6 7.4701 -3.8103 0.4563 15 6 7.7017 -5.2931 0.1205 16 6 8.2241 -5.4557 1.5577 17 6 7.3540 -4.2428 1.9274 18 7 2.0196 -0.6925 -1.1995 19 6 2.0824 0.2225 -2.3469 20 6 2.5884 -0.5216 -3.5558 21 8 2.8694 -1.6983 -3.4698 22 7 2.7285 0.1206 -4.7325 23 6 3.1882 -0.5565 -5.8323 24 1 3.4385 -1.6044 -5.7558 25 6 3.3332 0.1056 -7.0453 26 7 3.7734 -0.5435 -8.0997 27 14 2.9010 1.9181 -7.1776 28 1 4.1012 2.7368 -6.8708 29 1 2.4370 2.2170 -8.5561 30 1 1.8210 2.2412 -6.2108 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.7517 -0.1583 2.1370 35 1 1.6055 -1.7199 1.2951 36 1 4.5425 0.0092 2.8072 37 1 5.2723 0.2952 1.2090 38 1 3.8092 1.1866 1.6918 39 1 5.5883 -1.7334 -1.6842 40 1 7.2106 -1.3968 -0.8744 41 1 8.3330 -3.1756 0.2545 42 1 6.7825 -5.8453 -0.0750 43 1 8.4638 -5.4543 -0.6420 44 1 9.2939 -5.2720 1.6568 45 1 7.9076 -6.3823 2.0365 46 1 7.8354 -3.5562 2.6237 47 1 6.3394 -4.5064 2.2262 48 1 1.4495 -1.4979 -1.4101 49 1 1.0871 0.6163 -2.5525 50 1 2.7588 1.0461 -2.1183 51 1 2.5033 1.0615 -4.8013 52 1 3.8750 -0.0812 -8.9464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717746251.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:20 Heat of formation + Delta-G solvation = -43.444562 kcal Electronic energy + Delta-G solvation = -30450.705904 eV Core-core repulsion = 26450.889889 eV Total energy + Delta-G solvation = -3999.816016 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.16818 -40.33185 -39.71814 -38.00617 -36.43176 -36.09730 -35.72252 -33.76470 -32.12458 -28.49371 -28.07711 -27.57378 -26.60040 -26.45337 -25.51695 -24.12271 -22.11984 -21.62329 -21.29792 -20.35318 -20.24247 -19.72338 -18.11697 -17.79780 -17.16152 -16.88461 -16.50621 -16.36264 -16.30439 -15.87852 -15.79719 -15.40403 -15.10035 -14.77453 -14.49430 -14.36816 -14.13292 -13.75352 -13.66800 -13.50008 -13.37274 -13.31275 -13.22358 -13.17768 -13.04425 -12.92465 -12.74656 -12.60947 -12.43512 -12.37080 -11.99350 -11.88663 -11.81146 -11.52736 -11.52030 -11.34869 -10.83500 -10.70199 -10.48599 -10.43645 -10.25401 -9.49404 -9.06040 -8.42372 -6.03213 1.27272 1.33555 1.42308 1.77601 1.96240 2.20761 2.21402 2.75417 2.96758 3.13384 3.43232 3.58381 3.72331 3.79183 3.93491 3.97347 3.99696 4.11861 4.12454 4.15848 4.27182 4.28088 4.34238 4.39511 4.49712 4.53566 4.56201 4.59942 4.75482 4.83478 4.85531 4.89128 4.90273 4.91652 4.96521 5.02848 5.05291 5.10381 5.12401 5.13894 5.26891 5.29926 5.39941 5.52136 5.67527 5.81477 5.91189 6.16717 6.43535 6.59702 6.65401 6.87967 7.39005 7.54880 7.98106 8.75831 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009360 B = 0.003440 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.712144 B = 8138.326972 C =10326.999320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.067 3.933 3 H 0.095 0.905 4 C 0.129 3.871 5 N -0.605 5.605 6 C 0.076 3.924 7 C 0.542 3.458 8 O -0.570 6.570 9 C -0.164 4.164 10 H 0.151 0.849 11 C -0.150 4.150 12 C -0.113 4.113 13 H 0.073 0.927 14 C -0.077 4.077 15 C -0.146 4.146 16 C -0.133 4.133 17 C -0.126 4.126 18 N -0.667 5.667 19 C 0.066 3.934 20 C 0.447 3.553 21 O -0.609 6.609 22 N -0.592 5.592 23 C -0.327 4.327 24 H 0.049 0.951 25 C -0.016 4.016 26 N -0.936 5.936 27 Si 0.968 3.032 28 H -0.255 1.255 29 H -0.274 1.274 30 H -0.233 1.233 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.116 0.884 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.126 0.874 41 H 0.107 0.893 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.067 0.933 48 H 0.336 0.664 49 H 0.070 0.930 50 H 0.109 0.891 51 H 0.389 0.611 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.139 7.685 27.078 28.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.044 4.044 3 H 0.113 0.887 4 C 0.005 3.995 5 N -0.337 5.337 6 C -0.066 4.066 7 C 0.330 3.670 8 O -0.448 6.448 9 C -0.185 4.185 10 H 0.169 0.831 11 C -0.188 4.188 12 C -0.132 4.132 13 H 0.091 0.909 14 C -0.095 4.095 15 C -0.183 4.183 16 C -0.171 4.171 17 C -0.164 4.164 18 N -0.299 5.299 19 C -0.067 4.067 20 C 0.235 3.765 21 O -0.492 6.492 22 N -0.235 5.235 23 C -0.457 4.457 24 H 0.067 0.933 25 C -0.214 4.214 26 N -0.577 5.577 27 Si 0.787 3.213 28 H -0.179 1.179 29 H -0.199 1.199 30 H -0.157 1.157 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.134 0.866 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.144 0.856 41 H 0.125 0.875 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.088 0.912 46 H 0.104 0.896 47 H 0.086 0.914 48 H 0.154 0.846 49 H 0.087 0.913 50 H 0.127 0.873 51 H 0.224 0.776 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.681 6.512 26.867 27.889 hybrid contribution -1.355 0.407 -1.599 2.135 sum 2.326 6.919 25.269 26.302 Atomic orbital electron populations 1.22391 0.95620 1.02007 1.03378 1.22163 0.93606 0.98430 0.90180 0.88674 1.21550 0.79663 1.00968 0.97301 1.47516 1.06774 1.21011 1.58395 1.21978 0.95561 0.90268 0.98786 1.19856 0.89257 0.81486 0.76374 1.90666 1.65492 1.41968 1.46671 1.22270 0.92115 1.05165 0.98913 0.83103 1.22927 1.01914 1.00864 0.93074 1.22261 0.98759 0.90259 1.01909 0.90883 1.22227 0.94513 0.96090 0.96702 1.22999 1.00989 0.96005 0.98325 1.22799 1.00375 0.98629 0.95253 1.22854 1.00038 0.98183 0.95298 1.60088 1.58813 1.08209 1.02789 1.21616 1.01072 0.95366 0.88616 1.21069 0.82468 0.88001 0.84994 1.90595 1.54742 1.18757 1.85133 1.42020 1.60934 1.11765 1.08758 1.18965 1.42330 0.95893 0.88485 0.93260 1.26138 0.96425 1.05151 0.93727 1.69814 1.46467 1.39605 1.01803 0.85330 0.80208 0.76343 0.79379 1.17908 1.19907 1.15653 0.89223 0.92689 0.93547 0.86582 0.92750 0.90871 0.91081 0.89440 0.92725 0.85584 0.87458 0.91779 0.91234 0.88579 0.91228 0.89629 0.91400 0.84589 0.91274 0.87315 0.77603 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 9.16 71.98 0.66 -2.44 16 2 C 0.07 1.42 2.89 44.92 0.13 1.55 16 3 H 0.10 1.66 7.80 -2.39 -0.02 1.65 16 4 C 0.13 2.61 5.20 86.38 0.45 3.06 16 5 N -0.61 -13.59 2.78 -846.75 -2.35 -15.94 16 6 C 0.08 0.98 10.01 127.77 1.28 2.26 16 7 C 0.54 17.04 6.80 87.66 0.60 17.64 16 8 O -0.57 -24.09 14.98 -3.03 -0.05 -24.14 16 9 C -0.16 -4.25 4.31 -11.54 -0.05 -4.30 16 10 H 0.15 2.68 7.27 -2.39 -0.02 2.67 16 11 C -0.15 -4.56 9.93 30.62 0.30 -4.26 16 12 C -0.11 -3.30 5.06 -10.77 -0.05 -3.36 16 13 H 0.07 2.79 7.50 -2.39 -0.02 2.77 16 14 C -0.08 -1.63 3.88 -10.27 -0.04 -1.67 16 15 C -0.15 -3.13 7.63 31.12 0.24 -2.89 16 16 C -0.13 -2.15 8.08 31.12 0.25 -1.90 16 17 C -0.13 -2.18 7.45 31.12 0.23 -1.95 16 18 N -0.67 -21.98 4.15 -495.59 -2.06 -24.04 16 19 C 0.07 2.18 5.96 85.56 0.51 2.70 16 20 C 0.45 21.69 7.82 87.66 0.69 22.37 16 21 O -0.61 -36.78 15.78 -3.05 -0.05 -36.83 16 22 N -0.59 -29.42 5.09 -306.98 -1.56 -30.98 16 23 C -0.33 -20.05 10.16 84.04 0.85 -19.20 16 24 H 0.05 3.62 7.39 -2.91 -0.02 3.60 16 25 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 26 N -0.94 -58.09 13.96 21.66 0.30 -57.79 16 27 Si 0.97 39.89 27.74 68.60 1.90 41.79 16 28 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 29 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 30 H -0.23 -8.14 6.52 99.48 0.65 -7.49 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.01 7.45 -2.39 -0.02 1.00 16 33 H 0.05 0.96 8.13 -2.39 -0.02 0.94 16 34 H 0.12 1.37 8.07 -2.39 -0.02 1.35 16 35 H 0.05 1.42 7.42 -2.38 -0.02 1.40 16 36 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.95 6.64 -2.39 -0.02 0.94 16 38 H 0.09 0.78 8.07 -2.39 -0.02 0.76 16 39 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.13 2.98 8.13 -2.39 -0.02 2.96 16 41 H 0.11 1.91 8.08 -2.38 -0.02 1.90 16 42 H 0.06 1.61 7.98 -2.39 -0.02 1.59 16 43 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 48 H 0.34 13.18 8.17 -89.69 -0.73 12.45 16 49 H 0.07 1.92 7.44 -2.39 -0.02 1.91 16 50 H 0.11 3.04 8.06 -2.39 -0.02 3.03 16 51 H 0.39 15.95 5.76 -92.71 -0.53 15.42 16 52 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -88.75 417.80 2.24 -86.51 By element: Atomic # 1 Polarization: 54.67 SS G_CDS: -0.41 Total: 54.26 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 6.51 Total: 7.16 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -5.67 Total: -128.75 kcal Atomic # 8 Polarization: -60.87 SS G_CDS: -0.09 Total: -60.97 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.90 Total: 41.79 kcal Total: -88.75 2.24 -86.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717746251.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.062 kcal (2) G-P(sol) polarization free energy of solvation -88.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds