Wall clock time and date at job start Tue Mar 31 2020 20:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47471 * 2 1 4 4 C 1.52998 * 109.47179 * 239.99434 * 2 1 3 5 5 N 1.46495 * 109.47326 * 184.99923 * 4 2 1 6 6 C 1.46505 * 120.00636 * 270.00539 * 5 4 2 7 7 C 1.34783 * 120.00060 * 90.00401 * 5 4 2 8 8 O 1.21286 * 119.99442 * 0.02562 * 7 5 4 9 9 C 1.50693 * 120.00404 * 179.97438 * 7 5 4 10 10 H 1.08999 * 115.54769 * 34.33397 * 9 7 5 11 11 C 1.53069 * 117.53493 * 248.61535 * 9 7 5 12 12 C 1.53000 * 59.98584 * 252.53036 * 11 9 7 13 13 H 1.09002 * 117.49833 * 107.50105 * 12 11 9 14 14 C 1.52996 * 117.50107 * 252.50051 * 12 11 9 15 15 C 1.53784 * 113.61650 * 226.24535 * 14 12 11 16 16 C 1.53772 * 87.08096 * 220.01746 * 15 14 12 17 17 C 1.53773 * 87.08381 * 25.43014 * 16 15 14 18 18 N 1.46906 * 109.47165 * 120.00074 * 2 1 3 19 19 C 1.46897 * 110.99839 * 275.00268 * 18 2 1 20 20 C 1.50703 * 109.47146 * 179.97438 * 19 18 2 21 21 O 1.21289 * 119.99889 * 359.97438 * 20 19 18 22 22 N 1.34781 * 119.99938 * 179.97438 * 20 19 18 23 23 C 1.37091 * 119.99740 * 180.02562 * 22 20 19 24 24 H 1.07999 * 120.00146 * 0.02562 * 23 22 20 25 25 C 1.38957 * 119.99793 * 179.97438 * 23 22 20 26 26 N 1.31407 * 119.99659 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99765 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47466 * 60.00337 * 27 25 23 29 29 H 1.48507 * 109.47056 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47119 * 299.99990 * 27 25 23 31 31 H 1.09001 * 109.46786 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47011 * 300.00266 * 1 2 3 33 33 H 1.09001 * 109.46716 * 60.00425 * 1 2 3 34 34 H 1.09006 * 109.46654 * 65.00482 * 4 2 1 35 35 H 1.08996 * 109.47448 * 305.00720 * 4 2 1 36 36 H 1.08998 * 109.46866 * 269.99991 * 6 5 4 37 37 H 1.08994 * 109.46540 * 29.99759 * 6 5 4 38 38 H 1.08996 * 109.47188 * 149.99574 * 6 5 4 39 39 H 1.09008 * 117.49334 * 145.04591 * 11 9 7 40 40 H 1.08999 * 117.51639 * 0.02562 * 11 9 7 41 41 H 1.08999 * 112.85324 * 357.54719 * 14 12 11 42 42 H 1.09002 * 113.60804 * 334.56267 * 15 14 12 43 43 H 1.08999 * 113.61870 * 105.46336 * 15 14 12 44 44 H 1.09004 * 113.61744 * 270.88084 * 16 15 14 45 45 H 1.09004 * 113.68999 * 139.99161 * 16 15 14 46 46 H 1.09007 * 113.61655 * 220.02129 * 17 16 15 47 47 H 1.09000 * 113.69333 * 89.13295 * 17 16 15 48 48 H 1.00892 * 111.00307 * 151.04177 * 18 2 1 49 49 H 1.09006 * 109.46875 * 299.99579 * 19 18 2 50 50 H 1.08997 * 109.47588 * 59.99282 * 19 18 2 51 51 H 0.96994 * 119.99750 * 0.02562 * 22 20 19 52 52 H 0.97001 * 119.99293 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5001 -0.8265 -1.1905 6 6 4.3345 0.2339 -1.7612 7 6 4.0758 -1.8988 -0.6115 8 8 3.3851 -2.7769 -0.1394 9 6 5.5776 -2.0073 -0.5516 10 1 6.1125 -1.0655 -0.4290 11 6 6.2432 -3.0924 -1.4016 12 6 6.1702 -3.2485 0.1186 13 1 5.4736 -3.9869 0.5159 14 6 7.4677 -3.0726 0.9100 15 6 7.6992 -4.1674 1.9649 16 6 8.2167 -3.0549 2.8917 17 6 7.3465 -2.0815 2.0795 18 7 2.0198 -0.6925 1.1995 19 6 2.0825 0.2225 2.3469 20 6 2.5874 -0.5219 3.5561 21 8 2.8669 -1.6990 3.4705 22 7 2.7282 0.1205 4.7326 23 6 3.1880 -0.5566 5.8324 24 1 3.4377 -1.6046 5.7560 25 6 3.3337 0.1057 7.0452 26 7 3.0303 1.3809 7.1380 27 14 3.9595 -0.8170 8.5440 28 1 5.3150 -1.3548 8.2639 29 1 4.0235 0.1082 9.7038 30 1 3.0369 -1.9380 8.8560 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.7517 -0.1584 -2.1369 35 1 1.6054 -1.7198 -1.2951 36 1 4.5426 0.0091 -2.8072 37 1 3.8092 1.1864 -1.6918 38 1 5.2723 0.2951 -1.2091 39 1 7.2156 -2.8641 -1.8380 40 1 5.5948 -3.7280 -2.0048 41 1 8.3318 -2.8905 0.2711 42 1 6.7800 -4.6362 2.3165 43 1 8.4635 -4.8913 1.6825 44 1 9.2864 -2.8687 2.7955 45 1 7.8979 -3.1648 3.9283 46 1 7.8263 -1.1212 1.8895 47 1 6.3308 -1.9788 2.4614 48 1 2.9173 -1.1206 1.0288 49 1 2.7589 1.0461 2.1182 50 1 1.0871 0.6163 2.5525 51 1 2.5043 1.0617 4.8011 52 1 3.1317 1.8431 7.9847 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717746252.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:24 Heat of formation + Delta-G solvation = -20.961619 kcal Electronic energy + Delta-G solvation = -30882.660601 eV Core-core repulsion = 26883.819519 eV Total energy + Delta-G solvation = -3998.841082 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.50456 -38.97800 -38.12404 -36.79244 -35.45235 -34.87183 -33.77203 -31.25463 -30.80532 -27.77530 -26.86091 -26.27334 -25.73593 -25.47654 -24.00011 -23.20160 -21.13291 -20.28916 -19.35139 -19.21216 -18.87859 -17.82148 -17.31176 -16.51150 -16.29730 -15.58926 -15.38703 -15.17669 -14.99204 -14.51914 -14.35931 -14.15592 -13.76188 -13.45184 -13.32600 -13.03830 -12.77672 -12.60159 -12.50748 -12.40972 -12.25803 -12.22730 -11.99793 -11.80785 -11.74529 -11.55951 -11.42693 -11.29727 -11.02605 -10.91437 -10.78896 -10.56561 -10.40695 -10.39117 -10.13925 -9.93503 -9.80075 -9.60549 -9.41561 -8.71394 -8.28529 -7.89584 -7.83152 -6.34155 -3.74121 2.54203 2.87670 3.24918 3.29532 3.34650 3.75468 4.01698 4.17752 4.32303 4.45918 4.58519 4.63786 4.80734 4.89222 4.91919 4.96048 5.00768 5.09227 5.12268 5.15147 5.22663 5.31989 5.36395 5.38673 5.42310 5.49429 5.50773 5.57162 5.73937 5.80447 5.81331 5.84442 5.88610 5.89560 5.96090 6.08744 6.10187 6.10940 6.15149 6.24992 6.30185 6.38337 6.40509 6.51632 6.67894 7.27996 7.44530 7.62251 7.92101 8.15181 8.26006 8.71335 9.26632 9.63685 10.16875 10.83951 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008019 B = 0.004372 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3491.024944 B = 6403.321505 C = 9222.390657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.066 3.934 3 H 0.038 0.962 4 C 0.113 3.887 5 N -0.624 5.624 6 C 0.079 3.921 7 C 0.535 3.465 8 O -0.503 6.503 9 C -0.188 4.188 10 H 0.121 0.879 11 C -0.151 4.151 12 C -0.100 4.100 13 H 0.121 0.879 14 C -0.083 4.083 15 C -0.131 4.131 16 C -0.145 4.145 17 C -0.134 4.134 18 N -0.658 5.658 19 C 0.049 3.951 20 C 0.442 3.558 21 O -0.572 6.572 22 N -0.568 5.568 23 C -0.295 4.295 24 H 0.101 0.899 25 C 0.021 3.979 26 N -0.905 5.905 27 Si 0.928 3.072 28 H -0.274 1.274 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.092 0.908 48 H 0.354 0.646 49 H 0.035 0.965 50 H 0.083 0.917 51 H 0.391 0.609 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.564 -0.186 -20.013 21.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.045 4.045 3 H 0.056 0.944 4 C -0.010 4.010 5 N -0.359 5.359 6 C -0.064 4.064 7 C 0.323 3.677 8 O -0.377 6.377 9 C -0.209 4.209 10 H 0.139 0.861 11 C -0.188 4.188 12 C -0.118 4.118 13 H 0.139 0.861 14 C -0.102 4.102 15 C -0.168 4.168 16 C -0.182 4.182 17 C -0.171 4.171 18 N -0.297 5.297 19 C -0.083 4.083 20 C 0.227 3.773 21 O -0.455 6.455 22 N -0.205 5.205 23 C -0.425 4.425 24 H 0.119 0.881 25 C -0.180 4.180 26 N -0.547 5.547 27 Si 0.756 3.244 28 H -0.200 1.200 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.110 0.890 48 H 0.179 0.821 49 H 0.053 0.947 50 H 0.101 0.899 51 H 0.224 0.776 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.801 -1.610 -19.486 20.395 hybrid contribution 0.873 1.195 0.615 1.602 sum 6.674 -0.415 -18.871 20.021 Atomic orbital electron populations 1.21745 0.94123 1.02676 1.01070 1.21929 0.96344 0.95643 0.90621 0.94368 1.21736 0.79108 1.02936 0.97177 1.47850 1.06780 1.21701 1.59571 1.21803 0.95665 0.90455 0.98468 1.19777 0.89184 0.81449 0.77277 1.90824 1.64063 1.38770 1.44030 1.22254 0.92416 0.96601 1.09582 0.86098 1.23064 1.01468 0.99763 0.94536 1.22432 0.98347 0.97900 0.93141 0.86135 1.22191 0.95107 0.98104 0.94771 1.22927 1.01544 0.96061 0.96288 1.22792 0.99140 0.96917 0.99375 1.22942 1.01564 0.96750 0.95890 1.60194 1.36286 1.31036 1.02154 1.21732 1.00839 0.93875 0.91894 1.19846 0.84761 0.88291 0.84399 1.90559 1.54497 1.15880 1.84605 1.41850 1.58347 1.12334 1.07966 1.19637 1.39644 0.96333 0.86847 0.88091 1.25220 0.97880 0.95755 0.99105 1.69608 1.49105 1.08841 1.27109 0.85954 0.79420 0.78864 0.80197 1.19967 1.21039 1.19930 0.91669 0.92316 0.92931 0.90103 0.88919 0.92525 0.91211 0.90884 0.88084 0.88530 0.89384 0.89582 0.91807 0.90650 0.91074 0.91994 0.88964 0.82066 0.94677 0.89890 0.77629 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.42 37.16 0.35 -1.35 16 2 C 0.07 0.91 2.95 -67.71 -0.20 0.71 16 3 H 0.04 0.49 7.80 -51.93 -0.40 0.09 16 4 C 0.11 1.35 5.20 -4.05 -0.02 1.33 16 5 N -0.62 -7.48 2.66 -181.58 -0.48 -7.97 16 6 C 0.08 0.64 10.27 59.85 0.61 1.25 16 7 C 0.53 7.94 5.83 -10.99 -0.06 7.88 16 8 O -0.50 -9.73 14.42 5.55 0.08 -9.65 16 9 C -0.19 -2.26 4.81 -91.74 -0.44 -2.70 16 10 H 0.12 1.27 6.44 -51.93 -0.33 0.94 16 11 C -0.15 -1.50 9.93 -26.70 -0.27 -1.77 16 12 C -0.10 -1.26 5.05 -90.62 -0.46 -1.72 16 13 H 0.12 1.86 7.50 -51.93 -0.39 1.47 16 14 C -0.08 -0.96 3.88 -89.81 -0.35 -1.31 16 15 C -0.13 -1.56 7.64 -25.92 -0.20 -1.76 16 16 C -0.14 -1.81 8.08 -25.93 -0.21 -2.02 16 17 C -0.13 -1.83 7.46 -25.93 -0.19 -2.02 16 18 N -0.66 -12.43 5.82 -107.99 -0.63 -13.06 16 19 C 0.05 0.98 5.97 -4.98 -0.03 0.95 16 20 C 0.44 11.20 7.82 -10.98 -0.09 11.12 16 21 O -0.57 -16.68 15.78 5.55 0.09 -16.60 16 22 N -0.57 -15.04 5.29 -10.96 -0.06 -15.10 16 23 C -0.29 -8.50 9.68 -14.93 -0.14 -8.64 16 24 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -25.19 13.05 55.50 0.72 -24.47 16 27 Si 0.93 21.64 29.55 -169.99 -5.02 16.62 16 28 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 30 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.76 7.45 -51.93 -0.39 0.38 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.69 8.07 -51.93 -0.42 0.27 16 35 H 0.09 1.29 7.42 -51.93 -0.39 0.90 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 38 H 0.07 0.56 6.00 -51.93 -0.31 0.25 16 39 H 0.10 0.77 8.13 -51.92 -0.42 0.35 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 42 H 0.09 1.15 7.98 -51.93 -0.41 0.74 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 47 H 0.09 1.60 8.10 -51.93 -0.42 1.18 16 48 H 0.35 7.21 4.17 -39.30 -0.16 7.04 16 49 H 0.04 0.63 8.06 -51.93 -0.42 0.22 16 50 H 0.08 1.52 7.44 -51.93 -0.39 1.13 16 51 H 0.39 9.91 7.90 -40.82 -0.32 9.58 16 52 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 416.56 15.07 6.28 6.28 Total: -1.00 -34.68 416.56 -9.72 -44.41 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: -8.91 Total: 19.09 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -1.79 Total: 0.44 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -0.45 Total: -60.59 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: 0.17 Total: -26.25 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.68 -9.72 -44.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717746252.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.447 kcal (2) G-P(sol) polarization free energy of solvation -34.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds