Wall clock time and date at job start Tue Mar 31 2020 20:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47471 * 2 1 4 4 C 1.52998 * 109.47179 * 239.99434 * 2 1 3 5 5 N 1.46495 * 109.47326 * 184.99923 * 4 2 1 6 6 C 1.46505 * 120.00636 * 270.00539 * 5 4 2 7 7 C 1.34783 * 120.00060 * 90.00401 * 5 4 2 8 8 O 1.21286 * 119.99442 * 0.02562 * 7 5 4 9 9 C 1.50693 * 120.00404 * 179.97438 * 7 5 4 10 10 H 1.08999 * 115.54769 * 34.33397 * 9 7 5 11 11 C 1.53069 * 117.53493 * 248.61535 * 9 7 5 12 12 C 1.53000 * 59.98584 * 252.53036 * 11 9 7 13 13 H 1.09002 * 117.49833 * 107.50105 * 12 11 9 14 14 C 1.52996 * 117.50107 * 252.50051 * 12 11 9 15 15 C 1.53784 * 113.61650 * 226.24535 * 14 12 11 16 16 C 1.53772 * 87.08096 * 220.01746 * 15 14 12 17 17 C 1.53773 * 87.08381 * 25.43014 * 16 15 14 18 18 N 1.46906 * 109.47165 * 120.00074 * 2 1 3 19 19 C 1.46897 * 110.99839 * 275.00268 * 18 2 1 20 20 C 1.50703 * 109.47146 * 179.97438 * 19 18 2 21 21 O 1.21289 * 119.99889 * 359.97438 * 20 19 18 22 22 N 1.34781 * 119.99938 * 179.97438 * 20 19 18 23 23 C 1.37091 * 119.99740 * 180.02562 * 22 20 19 24 24 H 1.07999 * 120.00146 * 0.02562 * 23 22 20 25 25 C 1.38957 * 119.99793 * 179.97438 * 23 22 20 26 26 N 1.31407 * 119.99659 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99765 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47466 * 60.00337 * 27 25 23 29 29 H 1.48507 * 109.47056 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47119 * 299.99990 * 27 25 23 31 31 H 1.09001 * 109.46786 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47011 * 300.00266 * 1 2 3 33 33 H 1.09001 * 109.46716 * 60.00425 * 1 2 3 34 34 H 1.09006 * 109.46654 * 65.00482 * 4 2 1 35 35 H 1.08996 * 109.47448 * 305.00720 * 4 2 1 36 36 H 1.08998 * 109.46866 * 269.99991 * 6 5 4 37 37 H 1.08994 * 109.46540 * 29.99759 * 6 5 4 38 38 H 1.08996 * 109.47188 * 149.99574 * 6 5 4 39 39 H 1.09008 * 117.49334 * 145.04591 * 11 9 7 40 40 H 1.08999 * 117.51639 * 0.02562 * 11 9 7 41 41 H 1.08999 * 112.85324 * 357.54719 * 14 12 11 42 42 H 1.09002 * 113.60804 * 334.56267 * 15 14 12 43 43 H 1.08999 * 113.61870 * 105.46336 * 15 14 12 44 44 H 1.09004 * 113.61744 * 270.88084 * 16 15 14 45 45 H 1.09004 * 113.68999 * 139.99161 * 16 15 14 46 46 H 1.09007 * 113.61655 * 220.02129 * 17 16 15 47 47 H 1.09000 * 113.69333 * 89.13295 * 17 16 15 48 48 H 1.00892 * 111.00307 * 151.04177 * 18 2 1 49 49 H 1.09006 * 109.46875 * 299.99579 * 19 18 2 50 50 H 1.08997 * 109.47588 * 59.99282 * 19 18 2 51 51 H 0.96994 * 119.99750 * 0.02562 * 22 20 19 52 52 H 0.97001 * 119.99293 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5001 -0.8265 -1.1905 6 6 4.3345 0.2339 -1.7612 7 6 4.0758 -1.8988 -0.6115 8 8 3.3851 -2.7769 -0.1394 9 6 5.5776 -2.0073 -0.5516 10 1 6.1125 -1.0655 -0.4290 11 6 6.2432 -3.0924 -1.4016 12 6 6.1702 -3.2485 0.1186 13 1 5.4736 -3.9869 0.5159 14 6 7.4677 -3.0726 0.9100 15 6 7.6992 -4.1674 1.9649 16 6 8.2167 -3.0549 2.8917 17 6 7.3465 -2.0815 2.0795 18 7 2.0198 -0.6925 1.1995 19 6 2.0825 0.2225 2.3469 20 6 2.5874 -0.5219 3.5561 21 8 2.8669 -1.6990 3.4705 22 7 2.7282 0.1205 4.7326 23 6 3.1880 -0.5566 5.8324 24 1 3.4377 -1.6046 5.7560 25 6 3.3337 0.1057 7.0452 26 7 3.0303 1.3809 7.1380 27 14 3.9595 -0.8170 8.5440 28 1 5.3150 -1.3548 8.2639 29 1 4.0235 0.1082 9.7038 30 1 3.0369 -1.9380 8.8560 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.7517 -0.1584 -2.1369 35 1 1.6054 -1.7198 -1.2951 36 1 4.5426 0.0091 -2.8072 37 1 3.8092 1.1864 -1.6918 38 1 5.2723 0.2951 -1.2091 39 1 7.2156 -2.8641 -1.8380 40 1 5.5948 -3.7280 -2.0048 41 1 8.3318 -2.8905 0.2711 42 1 6.7800 -4.6362 2.3165 43 1 8.4635 -4.8913 1.6825 44 1 9.2864 -2.8687 2.7955 45 1 7.8979 -3.1648 3.9283 46 1 7.8263 -1.1212 1.8895 47 1 6.3308 -1.9788 2.4614 48 1 2.9173 -1.1206 1.0288 49 1 2.7589 1.0461 2.1182 50 1 1.0871 0.6163 2.5525 51 1 2.5043 1.0617 4.8011 52 1 3.1317 1.8431 7.9847 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717746252.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:23 Heat of formation + Delta-G solvation = -44.761395 kcal Electronic energy + Delta-G solvation = -30883.692637 eV Core-core repulsion = 26883.819519 eV Total energy + Delta-G solvation = -3999.873118 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.55798 -40.24862 -39.83608 -38.01670 -36.50271 -36.18592 -35.75160 -33.32522 -32.22400 -28.66283 -28.09809 -27.72785 -26.70392 -26.52093 -25.82255 -24.20473 -22.09970 -21.40193 -21.17566 -20.32944 -20.01903 -19.86503 -18.35328 -18.01693 -17.38304 -17.12628 -16.58102 -16.41103 -16.34385 -16.15044 -15.85491 -15.57452 -15.25528 -14.86823 -14.34841 -14.28178 -14.06509 -13.72999 -13.51338 -13.44644 -13.39617 -13.38875 -13.36069 -13.21664 -13.00852 -12.92036 -12.71068 -12.61679 -12.47619 -12.40233 -12.14043 -11.98709 -11.89245 -11.56111 -11.54079 -11.42242 -10.92013 -10.83589 -10.63370 -10.37003 -10.04449 -9.66438 -9.27853 -8.49179 -5.97857 1.36005 1.37437 1.48248 1.48844 1.96948 2.01356 2.26580 2.80781 2.92523 3.17093 3.42116 3.49543 3.62294 3.71172 3.84836 3.90083 3.93066 4.05668 4.09678 4.18209 4.20604 4.25008 4.31310 4.37893 4.43008 4.47929 4.51289 4.53857 4.70416 4.76415 4.81483 4.82808 4.86691 4.88039 4.91800 4.93342 5.02695 5.03484 5.05971 5.09745 5.26131 5.33367 5.35283 5.37468 5.57305 5.66454 5.89869 6.15487 6.32208 6.47933 6.58194 7.10015 7.20330 7.52004 8.09500 8.68246 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008019 B = 0.004372 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3491.024944 B = 6403.321505 C = 9222.390657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.063 3.937 3 H 0.059 0.941 4 C 0.114 3.886 5 N -0.619 5.619 6 C 0.071 3.929 7 C 0.523 3.477 8 O -0.565 6.565 9 C -0.193 4.193 10 H 0.142 0.858 11 C -0.113 4.113 12 C -0.126 4.126 13 H 0.076 0.924 14 C -0.063 4.063 15 C -0.134 4.134 16 C -0.143 4.143 17 C -0.143 4.143 18 N -0.684 5.684 19 C 0.065 3.935 20 C 0.434 3.566 21 O -0.619 6.619 22 N -0.571 5.571 23 C -0.334 4.334 24 H 0.072 0.928 25 C -0.009 4.009 26 N -0.918 5.918 27 Si 0.990 3.010 28 H -0.272 1.272 29 H -0.265 1.265 30 H -0.274 1.274 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.141 0.859 40 H 0.091 0.909 41 H 0.127 0.873 42 H 0.054 0.946 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.046 0.954 46 H 0.078 0.922 47 H 0.038 0.962 48 H 0.344 0.656 49 H 0.058 0.942 50 H 0.101 0.899 51 H 0.396 0.604 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.333 1.995 -22.202 23.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.047 4.047 3 H 0.077 0.923 4 C -0.008 4.008 5 N -0.352 5.352 6 C -0.070 4.070 7 C 0.313 3.687 8 O -0.444 6.444 9 C -0.214 4.214 10 H 0.159 0.841 11 C -0.151 4.151 12 C -0.145 4.145 13 H 0.095 0.905 14 C -0.081 4.081 15 C -0.172 4.172 16 C -0.180 4.180 17 C -0.181 4.181 18 N -0.322 5.322 19 C -0.068 4.068 20 C 0.221 3.779 21 O -0.505 6.505 22 N -0.208 5.208 23 C -0.463 4.463 24 H 0.090 0.910 25 C -0.209 4.209 26 N -0.559 5.559 27 Si 0.814 3.186 28 H -0.197 1.197 29 H -0.189 1.189 30 H -0.200 1.200 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.144 0.856 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.159 0.841 40 H 0.110 0.890 41 H 0.145 0.855 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.125 0.875 45 H 0.065 0.935 46 H 0.097 0.903 47 H 0.056 0.944 48 H 0.168 0.832 49 H 0.076 0.924 50 H 0.119 0.881 51 H 0.230 0.770 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.554 0.653 -21.710 22.996 hybrid contribution 0.253 0.552 1.282 1.419 sum 7.807 1.206 -20.428 21.902 Atomic orbital electron populations 1.21737 0.93068 1.01878 1.02518 1.22137 0.97130 0.96274 0.89185 0.92325 1.21786 0.79147 1.01931 0.97979 1.47975 1.07248 1.21652 1.58374 1.22113 0.95429 0.89806 0.99650 1.20346 0.90281 0.81447 0.76614 1.90794 1.65494 1.41245 1.46823 1.22326 0.90977 0.97506 1.10556 0.84075 1.23167 1.02554 0.97232 0.92104 1.22292 0.98462 0.97986 0.95769 0.90529 1.22169 0.95619 0.96171 0.94117 1.22899 1.00918 0.96737 0.96600 1.22860 1.00604 0.96693 0.97889 1.22862 0.98900 0.98546 0.97757 1.60212 1.36011 1.32076 1.03929 1.21582 1.01769 0.93635 0.89792 1.20898 0.83394 0.88054 0.85525 1.90534 1.56216 1.18256 1.85502 1.41883 1.58454 1.12434 1.08076 1.19561 1.42333 0.95732 0.88693 0.90955 1.25996 0.97146 0.96627 1.01135 1.69662 1.48471 1.09576 1.28221 0.85038 0.78700 0.77910 0.76979 1.19699 1.18904 1.19978 0.93619 0.93196 0.89078 0.85582 0.91707 0.90002 0.89431 0.90445 0.84144 0.89010 0.85535 0.92715 0.89099 0.87494 0.93526 0.90307 0.94357 0.83216 0.92374 0.88129 0.77029 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.42 71.98 0.68 -2.44 16 2 C 0.06 1.66 2.95 44.92 0.13 1.79 16 3 H 0.06 1.33 7.80 -2.39 -0.02 1.31 16 4 C 0.11 2.57 5.20 86.38 0.45 3.02 16 5 N -0.62 -14.10 2.66 -846.77 -2.25 -16.35 16 6 C 0.07 0.91 10.27 127.77 1.31 2.22 16 7 C 0.52 16.02 5.83 87.65 0.51 16.53 16 8 O -0.57 -23.74 14.42 -3.05 -0.04 -23.78 16 9 C -0.19 -4.58 4.81 -11.52 -0.06 -4.64 16 10 H 0.14 2.71 6.44 -2.39 -0.02 2.70 16 11 C -0.11 -2.04 9.93 30.62 0.30 -1.74 16 12 C -0.13 -3.31 5.05 -10.79 -0.05 -3.36 16 13 H 0.08 2.69 7.50 -2.39 -0.02 2.67 16 14 C -0.06 -1.41 3.88 -10.27 -0.04 -1.45 16 15 C -0.13 -3.29 7.64 31.12 0.24 -3.05 16 16 C -0.14 -3.65 8.08 31.11 0.25 -3.40 16 17 C -0.14 -4.05 7.46 31.12 0.23 -3.82 16 18 N -0.68 -26.50 5.82 -495.56 -2.88 -29.39 16 19 C 0.06 2.59 5.97 85.56 0.51 3.10 16 20 C 0.43 23.12 7.82 87.66 0.69 23.80 16 21 O -0.62 -38.82 15.78 -3.06 -0.05 -38.87 16 22 N -0.57 -31.51 5.29 -306.98 -1.62 -33.13 16 23 C -0.33 -20.10 9.68 84.04 0.81 -19.28 16 24 H 0.07 4.70 7.16 -2.91 -0.02 4.68 16 25 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 26 N -0.92 -51.02 13.05 21.66 0.28 -50.74 16 27 Si 0.99 44.77 29.55 68.60 2.03 46.79 16 28 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 29 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 30 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 31 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.24 7.45 -2.39 -0.02 1.22 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.13 1.68 8.07 -2.38 -0.02 1.66 16 35 H 0.06 1.85 7.42 -2.39 -0.02 1.83 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.09 0.84 8.07 -2.39 -0.02 0.82 16 38 H 0.08 0.94 6.00 -2.39 -0.01 0.93 16 39 H 0.14 1.47 8.13 -2.38 -0.02 1.45 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.13 1.92 8.07 -2.39 -0.02 1.91 16 42 H 0.05 1.66 7.98 -2.39 -0.02 1.64 16 43 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 45 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 47 H 0.04 1.48 8.10 -2.39 -0.02 1.46 16 48 H 0.34 14.71 4.17 -89.70 -0.37 14.34 16 49 H 0.06 2.05 8.06 -2.38 -0.02 2.03 16 50 H 0.10 3.65 7.44 -2.39 -0.02 3.63 16 51 H 0.40 20.57 7.90 -92.71 -0.73 19.84 16 52 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -83.63 416.56 1.70 -81.92 By element: Atomic # 1 Polarization: 56.48 SS G_CDS: -0.19 Total: 56.30 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 6.43 Total: 7.25 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -6.48 Total: -129.61 kcal Atomic # 8 Polarization: -62.56 SS G_CDS: -0.09 Total: -62.65 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -83.63 1.70 -81.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717746252.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.163 kcal (2) G-P(sol) polarization free energy of solvation -83.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds