Wall clock time and date at job start Tue Mar 31 2020 20:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47103 * 2 1 4 4 N 1.46893 * 109.47385 * 240.00120 * 2 1 3 5 5 C 1.46902 * 111.00019 * 84.99611 * 4 2 1 6 6 C 1.50703 * 109.47056 * 180.02562 * 5 4 2 7 7 O 1.21293 * 120.00150 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00037 * 180.02562 * 6 5 4 9 9 C 1.37108 * 120.00275 * 180.02562 * 8 6 5 10 10 H 1.07996 * 119.99868 * 359.97438 * 9 8 6 11 11 C 1.38949 * 119.99867 * 179.97438 * 9 8 6 12 12 N 1.31411 * 120.00207 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99674 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47157 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47038 * 119.99950 * 13 11 9 16 16 H 1.48501 * 109.46776 * 239.99898 * 13 11 9 17 17 C 1.53005 * 109.47144 * 119.99895 * 2 1 3 18 18 H 1.09001 * 109.47023 * 184.99870 * 17 2 1 19 19 C 1.53000 * 109.46886 * 65.00006 * 17 2 1 20 20 N 1.46499 * 109.47319 * 305.00084 * 17 2 1 21 21 C 1.34771 * 119.99983 * 204.99839 * 20 17 2 22 22 O 1.21614 * 120.00402 * 0.02562 * 21 20 17 23 23 C 1.47103 * 119.99947 * 179.97438 * 21 20 17 24 24 C 1.32990 * 120.00290 * 186.98445 * 23 21 20 25 25 C 1.51267 * 120.84598 * 12.17684 * 24 23 21 26 26 C 1.53672 * 108.31065 * 128.61835 * 25 24 23 27 27 C 1.52954 * 109.32395 * 54.86038 * 26 25 24 28 28 C 1.52967 * 109.81335 * 296.27007 * 27 26 25 29 29 C 1.51272 * 120.85240 * 192.45063 * 24 23 21 30 30 H 1.08998 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46725 * 299.99951 * 1 2 3 32 32 H 1.08997 * 109.47015 * 59.99785 * 1 2 3 33 33 H 1.00903 * 111.00307 * 321.04644 * 4 2 1 34 34 H 1.08988 * 109.47464 * 300.00117 * 5 4 2 35 35 H 1.08998 * 109.46818 * 60.01025 * 5 4 2 36 36 H 0.97008 * 120.00029 * 0.02562 * 8 6 5 37 37 H 0.97008 * 119.99701 * 179.97438 * 12 11 9 38 38 H 1.09007 * 109.47179 * 60.00003 * 19 17 2 39 39 H 1.09004 * 109.46988 * 179.97438 * 19 17 2 40 40 H 1.08997 * 109.47376 * 300.00244 * 19 17 2 41 41 H 0.97001 * 119.99640 * 24.72509 * 20 17 2 42 42 H 1.08003 * 119.99827 * 6.98768 * 23 21 20 43 43 H 1.09004 * 109.62432 * 248.38570 * 25 24 23 44 44 H 1.08991 * 109.62926 * 8.95531 * 25 24 23 45 45 H 1.08999 * 109.61947 * 294.83664 * 26 25 24 46 46 H 1.08999 * 109.41453 * 174.74983 * 26 25 24 47 47 H 1.09002 * 109.41234 * 176.17135 * 27 26 25 48 48 H 1.08992 * 109.41713 * 56.37550 * 27 26 25 49 49 H 1.09001 * 109.48383 * 303.62172 * 28 27 26 50 50 H 1.09003 * 109.47747 * 183.58257 * 28 27 26 51 51 H 1.08999 * 109.62783 * 351.04775 * 29 24 23 52 52 H 1.09000 * 109.61953 * 111.61477 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0825 0.2227 -2.3468 6 6 2.5874 -0.5217 -3.5560 7 8 2.8679 -1.6987 -3.4702 8 7 2.7283 0.1205 -4.7324 9 6 3.1872 -0.5568 -5.8326 10 1 3.4361 -1.6049 -5.7564 11 6 3.3319 0.1053 -7.0456 12 7 3.0284 1.3805 -7.1385 13 14 3.9578 -0.8174 -8.5444 14 1 4.2266 -2.2313 -8.1787 15 1 2.9335 -0.7697 -9.6185 16 1 5.2114 -0.1846 -9.0274 17 6 2.0400 -0.7212 1.2493 18 1 3.1264 -0.6443 1.2952 19 6 1.6353 -2.1955 1.1880 20 7 1.4559 -0.1037 2.4424 21 6 2.0913 -0.1938 3.6275 22 8 3.1498 -0.7874 3.7065 23 6 1.5050 0.4268 4.8255 24 6 2.1941 0.4593 5.9625 25 6 3.6678 0.1191 5.9862 26 6 4.4138 1.2538 6.7055 27 6 3.7951 1.4699 8.0876 28 6 2.3454 1.9350 7.9397 29 6 1.5229 0.8316 7.2660 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.4497 -1.4979 -1.4101 34 1 1.0872 0.6163 -2.5525 35 1 2.7589 1.0462 -2.1182 36 1 2.5050 1.0621 -4.8008 37 1 3.1298 1.8428 -7.9853 38 1 2.0699 -2.6550 0.3002 39 1 1.9990 -2.7094 2.0778 40 1 0.5490 -2.2724 1.1420 41 1 0.6138 0.3735 2.3786 42 1 0.5149 0.8559 4.7817 43 1 3.8185 -0.8186 6.5211 44 1 4.0384 0.0251 4.9655 45 1 4.3329 2.1717 6.1233 46 1 5.4642 0.9843 6.8156 47 1 4.3654 2.2273 8.6254 48 1 3.8202 0.5343 8.6461 49 1 2.3135 2.8369 7.3283 50 1 1.9298 2.1483 8.9246 51 1 0.5148 1.1955 7.0679 52 1 1.4786 -0.0414 7.9172 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725079563.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:21 Heat of formation + Delta-G solvation = -71.407510 kcal Electronic energy + Delta-G solvation = -28795.973200 eV Core-core repulsion = 24794.944620 eV Total energy + Delta-G solvation = -4001.028580 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.32396 -38.80275 -38.20453 -37.19734 -34.47257 -33.78503 -33.02244 -31.32728 -31.27494 -30.84937 -29.11111 -27.15449 -26.37655 -24.66034 -23.79136 -23.27637 -22.02321 -20.68710 -19.88075 -19.35903 -18.78286 -17.90637 -17.20705 -16.28466 -15.87850 -15.61126 -15.52232 -15.00616 -14.79492 -14.69278 -14.55013 -14.45970 -13.95858 -13.91246 -13.71776 -13.54144 -13.28110 -13.06146 -12.84645 -12.64236 -12.37550 -12.23492 -12.19542 -12.13064 -11.85006 -11.54407 -11.46275 -11.40329 -11.24082 -11.08575 -11.05588 -10.83726 -10.79189 -10.64383 -10.33756 -10.22000 -9.60339 -9.51559 -9.21541 -9.00912 -8.46578 -8.06930 -7.95502 -6.41513 -3.82199 1.12948 3.07414 3.16740 3.16891 3.27545 3.35073 3.91184 4.11533 4.29711 4.34686 4.39184 4.54228 4.63268 4.74194 4.79853 4.82549 4.95574 5.03749 5.05988 5.10427 5.19445 5.22694 5.26854 5.27831 5.38891 5.41642 5.49061 5.57226 5.63951 5.64996 5.69155 5.70523 5.74017 5.80555 5.85961 5.94367 5.98817 6.00818 6.03649 6.11979 6.25427 6.26703 6.39767 6.43613 6.58936 7.17771 7.46327 7.55932 7.63538 8.07013 8.20174 8.61522 9.18455 9.54693 10.06038 10.76285 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025515 B = 0.001662 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.133945 B =16840.646928 C =17088.990034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.078 3.922 3 H 0.082 0.918 4 N -0.658 5.658 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.582 6.582 8 N -0.564 5.564 9 C -0.298 4.298 10 H 0.104 0.896 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.929 3.071 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.281 1.281 17 C 0.154 3.846 18 H 0.096 0.904 19 C -0.162 4.162 20 N -0.722 5.722 21 C 0.548 3.452 22 O -0.536 6.536 23 C -0.235 4.235 24 C -0.019 4.019 25 C -0.123 4.123 26 C -0.118 4.118 27 C -0.124 4.124 28 C -0.117 4.117 29 C -0.094 4.094 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.353 0.647 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.396 0.604 42 H 0.124 0.876 43 H 0.075 0.925 44 H 0.123 0.877 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.064 0.936 50 H 0.065 0.935 51 H 0.073 0.927 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.908 4.129 28.816 29.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.033 4.033 3 H 0.100 0.900 4 N -0.291 5.291 5 C -0.081 4.081 6 C 0.226 3.774 7 O -0.466 6.466 8 N -0.201 5.201 9 C -0.428 4.428 10 H 0.122 0.878 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.757 3.243 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.207 1.207 17 C 0.049 3.951 18 H 0.114 0.886 19 C -0.220 4.220 20 N -0.374 5.374 21 C 0.338 3.662 22 O -0.416 6.416 23 C -0.256 4.256 24 C -0.020 4.020 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.162 4.162 28 C -0.155 4.155 29 C -0.131 4.131 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.173 0.827 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.232 0.768 42 H 0.142 0.858 43 H 0.094 0.906 44 H 0.141 0.859 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.092 0.908 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.290 3.103 28.874 29.518 hybrid contribution -1.440 0.715 -1.108 1.953 sum -6.730 3.818 27.766 28.824 Atomic orbital electron populations 1.22615 0.97452 1.02706 1.01997 1.21724 0.92567 0.98178 0.90875 0.90010 1.60024 1.57726 1.09091 1.02246 1.21704 0.99947 0.95697 0.90785 1.19800 0.85168 0.88246 0.84160 1.90529 1.55224 1.16273 1.84592 1.41869 1.57844 1.12423 1.07952 1.19764 1.39870 0.96470 0.86706 0.87839 1.25263 0.97671 0.95781 0.99263 1.69623 1.48791 1.08862 1.27075 0.85798 0.78231 0.79658 0.80651 1.19203 1.20797 1.20750 1.20871 0.99470 0.92405 0.82349 0.88621 1.22169 1.00968 0.95767 1.03146 1.46153 1.26031 1.56814 1.08419 1.18539 0.84154 0.80155 0.83397 1.90632 1.22250 1.43546 1.85214 1.22306 1.01965 1.08007 0.93329 1.22723 0.95896 0.89813 0.93617 1.21705 0.90670 0.97873 1.05635 1.21680 0.99392 0.98833 0.95599 1.21572 0.95657 1.01387 0.97540 1.21575 0.95386 0.98016 1.00489 1.20979 0.98569 0.99525 0.94013 0.91637 0.92500 0.92015 0.82662 0.93785 0.89570 0.77486 0.91949 0.90099 0.92582 0.92969 0.76824 0.85790 0.90643 0.85936 0.92013 0.91504 0.91967 0.91866 0.91698 0.91585 0.90842 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 8.68 37.16 0.32 -1.45 16 2 C 0.08 0.91 2.64 -67.71 -0.18 0.73 16 3 H 0.08 0.94 7.80 -51.93 -0.40 0.54 16 4 N -0.66 -10.21 5.23 -108.00 -0.56 -10.77 16 5 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 6 C 0.44 10.34 7.82 -10.99 -0.09 10.25 16 7 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 8 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 9 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 10 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 12 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 13 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 C 0.15 1.84 2.63 -67.93 -0.18 1.66 16 18 H 0.10 1.42 7.58 -51.93 -0.39 1.02 16 19 C -0.16 -1.97 8.86 37.16 0.33 -1.64 16 20 N -0.72 -7.10 4.99 -54.99 -0.27 -7.38 16 21 C 0.55 6.25 7.58 -12.67 -0.10 6.15 16 22 O -0.54 -7.91 12.88 5.26 0.07 -7.84 16 23 C -0.24 -2.04 9.65 -37.81 -0.37 -2.40 16 24 C -0.02 -0.16 5.38 -100.61 -0.54 -0.70 16 25 C -0.12 -1.17 5.32 -27.26 -0.15 -1.31 16 26 C -0.12 -0.90 5.95 -26.41 -0.16 -1.06 16 27 C -0.12 -0.75 5.81 -26.77 -0.16 -0.91 16 28 C -0.12 -0.64 5.94 -26.63 -0.16 -0.80 16 29 C -0.09 -0.55 6.04 -27.49 -0.17 -0.72 16 30 H 0.06 0.62 6.55 -51.93 -0.34 0.28 16 31 H 0.06 0.40 6.29 -51.93 -0.33 0.08 16 32 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 33 H 0.35 5.65 7.39 -39.29 -0.29 5.36 16 34 H 0.04 0.67 7.43 -51.94 -0.39 0.29 16 35 H 0.09 1.39 8.06 -51.93 -0.42 0.97 16 36 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.08 1.10 7.13 -51.93 -0.37 0.73 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.55 6.57 -51.93 -0.34 0.21 16 41 H 0.40 2.88 6.56 -40.82 -0.27 2.61 16 42 H 0.12 0.76 7.96 -52.48 -0.42 0.34 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.12 1.51 4.78 -52.89 -0.25 1.26 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 51 H 0.07 0.35 7.92 -51.93 -0.41 -0.06 16 52 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 407.65 15.07 6.14 6.14 Total: -1.00 -32.29 407.65 -9.39 -41.68 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -8.65 Total: 15.23 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -1.85 Total: 0.66 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.17 Total: -56.29 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.16 Total: -23.51 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.29 -9.39 -41.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725079563.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.725 kcal (2) G-P(sol) polarization free energy of solvation -32.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds